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LOCUS XM_709212 2343 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_709212 VERSION XM_709212.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2343) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2343) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2343) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2343) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2343) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2343) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_709212.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2343 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2343 /gene="TOP1" /locus_tag="CAALFM_C600950CA" /db_xref="GeneID:3644034" CDS 1..2343 /gene="TOP1" /locus_tag="CAALFM_C600950CA" /note="DNA topoisomerase I; required for wild-type growth and for wild-type mouse virulence; sensitive to camptothecin; induced upon adherence to polystyrene; rat catheter biofilm induced" /codon_start=1 /transl_table=12 /product="DNA topoisomerase 1" /protein_id="XP_714305.1" /db_xref="CGD:CAL0000177495" /db_xref="GeneID:3644034" /translation="MSSSDEEDIALSRLAKKSSSITSASTYEDDEDDDIPLAKKSRKK RVESDYEEDEDEVPLKKRKLSNGRAKKQVKTETKVKKEPKSANKSKSTSKKDTKVKKE KTTVKKESKATSTKVKEESKTQSDSQASVKSETPEEDQGYKWWEVNQEEEGDGYIKWQ TLEHNGVMFPPPYEPLPSHVKLYYNNKPVNLPPEAEEVAGFYGAMLETDHAKNPVFQK NFFNDFLEVLKECGGCGVEIKKFEKLDFSKMYAHFEKLREEKKAMSREEKKRIKEEKE KEEEPYRTCYLNGRKELVGNFRIEPPGLFRGRGAHPKTGKLKRRVVPEQVTLNLGKDA KIPEPPAGHQWGEIRHDNEVTWLAMWKENISDSLKYVRFANNSSVKGQSDFKKFETAR KLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSL RYEHVTLKPPNKVIFDFLGKDSIRFYQEVEVDKQVFKNLRIFKKSPKQPGDDLFDRIN PSLVNRQLQNYMKGLTAKVFRTYNASKTMQDQIDIIENEGTVAEKVAKFNAANRTVAI LCNHQRTVSKTHGDSVQRINDKLKEFMWQKIRLKKMILQLEPKLKKKDPKYFEEIDDL IKEDIEHIHHTIIKRQREQAKKKLERDNEKLKLEGKPLLTESDIKDKLDKIDELEKEY QKELKTGKPIVTKNATVEKLKQQIETLENKILNVSIQLKDKEDNSEVSLGTSKMNYID PRLIVMFSKKFDVPIEKLFTKTLREKFIWAIESADENWRF" misc_feature 469..1119 /gene="TOP1" /locus_tag="CAALFM_C600950CA" /note="Eukaryotic DNA topoisomerase I, DNA binding fragment; Region: Topoisom_I_N; pfam02919" /db_xref="CDD:460746" misc_feature 910..2256 /gene="TOP1" /locus_tag="CAALFM_C600950CA" /note="DNA Topoisomerase I (eukaryota); Region: TOPEUc; smart00435" /db_xref="CDD:214661" ORIGIN 1 atgagttcat cagacgaaga agacattgcc ttgtctagac tcgctaaaaa atcatcctcg 61 atcacttcag cttccactta tgaagacgat gaagatgatg atatcccttt agctaaaaaa 121 tccaggaaaa agagggttga atctgattat gaagaagatg aagacgaagt cccattgaaa 181 aagagaaaat tgtctaatgg tagagcaaaa aaacaagtta aaaccgaaac taaagttaaa 241 aaggaaccta aaagtgccaa taaatccaaa tctacatcta aaaaggacac caaagttaag 301 aaagagaaaa ctacagtcaa gaaggaatct aaagccacaa gcactaaagt gaaagaagaa 361 tccaaaactc aatcagattc acaagcatcg gttaaatctg aaactcctga agaagatcaa 421 gggtacaaat ggtgggaagt gaatcaagaa gaggaaggtg atggttatat caaatggcaa 481 acactagaac ataacggtgt tatgttccca ccaccatatg aaccattacc atctcatgtc 541 aaattatatt ataacaataa accagttaat ttacctccag aagcagaaga agttgccgga 601 ttttatggag caatgttaga aactgatcat gctaaaaacc cagttttcca aaagaatttt 661 ttcaatgatt ttttggaagt tttaaaagaa tgtggtggtt gtggtgttga aattaaaaaa 721 tttgaaaaat tagattttag taaaatgtat gctcattttg aaaaattacg tgaagagaaa 781 aaggccatga gtagggaaga aaagaaaaga atcaaagaag aaaaagaaaa agaagaagaa 841 ccttatagga cttgttatct taatggtaga aaagaattag tggggaattt ccgtattgaa 901 cctccaggtt tattccgtgg tcgtggtgca catcctaaaa ctgggaaatt aaaacgtcga 961 gtagtgccgg aacaagtgac tttgaattta ggtaaagatg ctaaaatacc tgaaccacct 1021 gcaggccatc aatgggggga aattagacat gataatgaag tcacttggtt agccatgtgg 1081 aaagaaaata tttctgattc attgaaatac gttagatttg ctaataattc ttcagttaaa 1141 ggtcaatccg atttcaaaaa atttgaaacg gcgagaaaat taagagatca cgttgattct 1201 attagaaaag attataccaa aatgttaaaa tcagagaaaa tgcaagatag acaaatggcc 1261 acggctatgt atcttattga tgtttttgca ttgagggctg gtggtgaaaa aggtgaggat 1321 gaagccgata ccgttggttg ttgttcatta cgatatgaac atgtaacttt aaaaccaccc 1381 aacaaggtta ttttcgattt tttgggtaaa gattcaatta gattttatca agaagttgaa 1441 gttgataaac aagttttcaa aaatctacga attttcaaaa aatctcctaa acaacctggt 1501 gatgatttat ttgatcgtat aaacccttca ttagtcaatc gacaattaca aaattatatg 1561 aaaggattaa cagcaaaagt tttccgtaca tataatgcct cgaaaaccat gcaagatcaa 1621 attgatataa ttgaaaatga aggtacagtg gcggaaaaag tggctaaatt caatgctgcc 1681 aatagaacgg tggctatttt atgtaatcac cagcgtacgg tcagtaaaac ccatggtgat 1741 agtgttcaga gaattaatga caaattaaaa gaattcatgt ggcaaaagat tagattaaag 1801 aagatgattt tacaattaga acccaaatta aaaaagaaag atccgaaata ttttgaagaa 1861 attgatgatt taatcaaaga agatattgaa catattcatc atactataat taaaagacaa 1921 cgagaacaag ctaaaaaaaa attagaacgt gataatgaaa aattgaaact tgaaggtaaa 1981 ccattattaa ctgaatcaga tataaaagat aaattagata aaattgatga attagaaaaa 2041 gaatatcaaa aagaattgaa aactggtaaa ccaatagtca ccaaaaatgc taccgttgaa 2101 aaattaaaac aacaaattga aactcttgaa aataaaattc ttaatgtttc aattcaatta 2161 aaagataaag aagataattc tgaagtttct ttaggaactt caaaaatgaa ttatattgat 2221 ccaagattaa ttgttatgtt ttctaaaaaa tttgatgttc ctattgaaaa attatttacc 2281 aaaactttaa gagaaaagtt catttgggct attgaatcag ctgatgaaaa ttggagattc 2341 taa