Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_708724 1548 bp mRNA linear PLN 18-APR-2022 partial mRNA. ACCESSION XM_708724 VERSION XM_708724.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1548) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1548) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1548) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1548) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1548) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1548) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_708724.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1548 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1548 /locus_tag="CAALFM_C601920CA" /db_xref="GeneID:3644534" CDS 1..>1548 /locus_tag="CAALFM_C601920CA" /note="Putative transcription factor with zinc finger DNA-binding motif; heterozygous null mutant exhibits hypersensitivity to parnafungin and cordycepin in the C. albicans fitness test" /codon_start=1 /transl_table=12 /product="uncharacterized protein" /protein_id="XP_713817.2" /db_xref="CGD:CAL0000175209" /db_xref="GeneID:3644534" /translation="MTDILEAYKQSLSELTFNSRPIIDNLTIIAKENPNVADGIVDLI TQRIYKTIPDQKLFALYLLDSICKIIGNPYNILAGDEIFNLYSHVFQLVNETIRNKLV NLFETWKITKTRGTNDPLFPKAQLDKIDSFLKKAGYPKAKTNSGVMSQQSLVNDINQL IPIFEKKVRTNPNSKSQDRLRALNQLRSILSSQVMKANELQAIQNQLQNIKEQELSSS SSSASKGGTPIPTPGPTPATTPGPSSIPPVSRVNPAFMIFNDLVLSGLVKKDQEPIPG SKPVYSLVFPQTKYVPSASGLGSNSTLEDLLLSSSSIQRSDYDKLKFTEMVKVSKLSF NNLQDFIKNNKPTTKLRDLLYDSKPSKCSICGKRFASDKEGADKKRLHLDWHFRINKK LSNKGSNVQSRNWYLDDYEWVHFNENDLLEYSTDVRIPDITQEMDETISTDSQYVIVP STETNMNNKCLICREQIKATYNDEIGEWCWYNCIRQPGEPKNSRKIVHVTCYNESSKK RPADNDDL" misc_feature 13..399 /locus_tag="CAALFM_C601920CA" /note="CID (CTD-Interacting Domain) of Pcf11; Region: CID_Pcf11; cd16982" /db_xref="CDD:340779" misc_feature order(58..63,67..69,181..183,190..195,202..207,298..300, 310..312,319..321) /locus_tag="CAALFM_C601920CA" /note="CTD binding site [polypeptide binding]; other site" /db_xref="CDD:340779" misc_feature 1168..1374 /locus_tag="CAALFM_C601920CA" /note="Subunit of cleavage factor IA Pcf11; Region: CFIA_Pcf11; pfam11526" /db_xref="CDD:431919" ORIGIN 1 atgacagaca ttttggaagc atacaaacaa agcttgtctg agttaacatt taattcacgt 61 ccaataattg ataatttaac tataatagca aaagagaatc caaatgttgc cgatggaatc 121 gtcgatttaa taactcaacg aatttataaa actattccag accagaaatt atttgcattg 181 tatttactag attctatatg caaaattatt ggtaaccctt ataacatatt agctggagat 241 gagattttta atttatattc tcatgtattt caattagtca acgagacaat tcgtaacaag 301 ttggtgaact tgtttgaaac atggaaaata accaaaacaa gaggtaccaa tgacccttta 361 tttccgaaag cacaattaga taaaatagat tcatttttga agaaggcagg gtacccgaag 421 gccaaaacaa actcgggtgt aatgtcccaa caatccctag tgaacgatat taaccaatta 481 attcctattt tcgaaaaaaa agtacgaact aacccaaact ccaagtcaca agatagactt 541 cgggcattaa atcaattaag atcaatactt tctagccaag tgatgaaagc taatgaatta 601 caggctattc aaaatcaact acaaaacatt aaggagcaag aactctcatc gtcatcttct 661 tcagcatcaa aaggtggcac ccctattcct accccaggac caactcctgc cactacgccg 721 ggaccctctt cgattccacc tgtgtctagg gtgaacccgg cattcatgat attcaatgat 781 ttggttcttt cagggttggt taaaaaggat caagaaccaa tccctggatc taaaccagtt 841 tactcgttgg tttttccaca aaccaaatat gtaccatcag caagtggtct cggctctaat 901 agtactttag aagatttatt gttatctagt agttcaatac aaagatctga ttatgataaa 961 ttgaagttta cggaaatggt taaggttagt aaattgtctt tcaacaattt gcaagacttt 1021 attaaaaata ataaacctac aacaaaattg cgtgatttgc tttatgattc aaaaccatcc 1081 aaatgttcaa tttgtggtaa aagatttgca tctgataaag aaggggcaga taaaaagaga 1141 ttacatttag attggcattt tagaatcaac aagaagctct ctaataaagg cagtaatgtt 1201 caatctcgaa attggtatct agatgattat gaatgggttc attttaatga aaacgatctt 1261 ttggagtatt cgacagatgt aagaatacca gatattactc aggaaatgga tgaaactatt 1321 tcaaccgata gccaatacgt gattgttcca tcaacagaaa caaatatgaa caataaatgc 1381 ttaatctgtc gtgagcaaat caaggctact tataatgatg aaattggaga atggtgctgg 1441 tacaattgta ttagacaacc tggagagcct aaaaatagca gaaaaattgt ccatgtcact 1501 tgttataatg aatccagcaa gaagagacca gcggacaatg atgatttg