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LOCUS XM_707414 2820 bp mRNA linear PLN 18-APR-2022 mRNA. ACCESSION XM_707414 VERSION XM_707414.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2820) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2820) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2820) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2820) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2820) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2820) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_707414.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2820 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2820 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /db_xref="GeneID:3645870" CDS 1..2820 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="Ortholog(s) have ubiquitin binding activity" /codon_start=1 /transl_table=12 /product="coatomer subunit beta'" /protein_id="XP_712507.2" /db_xref="CGD:CAL0000201645" /db_xref="GeneID:3645870" /translation="MKLDVVKQFSTRSDRVKGIDFHPTEPWILTTLYNGKIEIWSYAT NSLVKSIQVTELPVRAGKFIARKNWIVVGSDDFQIRVYNYNTGEKVTQFEAHPDYIRS IAVHPSKPYILTSSDDLTIKLWNWDHNWKLEQTFEGHQHYVMSVNFNPKDPNTFASAC LDRTVKIWSLGSSQPNFTLIAHEAKGVNYVDYYPQADKPYLITSSDDKTIKVWDYQTK SCVATLEGHLSNVSFAIFHPELPIIVSGSEDGTIRFWNSNTFKLEKSINYSLERAWCI GILPKSNVIAAGFDSGFVIIKLGSEEPLFSMDSNNKLIYAKNSEVYQSVIKPSSSEGL KDGESLNLQQRDLGSIEIFPQTLNHSPNGRYAAVCGDGEYIVYTALAWRSKSYGSALD FVWNSHDSSAACPFAIRESGVSVKIFKNFQEYLTLDLIYQADKIFTGSLLGVKSEGCI SFYDWEHGKLVRRVDLDDDIIDVIWSDNGELLAIVTTSNLGEISSTVGVKKNNETYFL SYNHELFEEALANGELDAEEGAESAFDVLYTLPTSESILSGKFIGDVFVYTTGTTNRL NYFVGGEVINLGHFDRKFYIIGYKATDGKLYLIDKSFDVVSWYVNAEVLELQTLVMRG DLEQFATQNIVVEKEHGENGEVEEEEVPDLSTITLENLSEEYSQLISRFTKTELNQLS RFFEKLGYLALSFSLSQDFDSKFQLSLSTGNLKQAYDLLSAQEKETPSLSLANSTKWK KLGDLALNKWNIKLAQESFWLAKDYSSLLLLLSSTQNKSQLIKLAEVCESKGKYNIAW QSWWLVGDVGKCFDLLITSERYTEAVIFGKNYGVDPEKLIKAIELWKQTLHKKNKSKV ANRLIDDFSNLQTNGSTGAPLIDLESKQDKDQETTTQPQQEAKEKIEDEAGASEVQRE EVENVEAEIQQDDEVTAEEEEEEDA" misc_feature 37..888 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cd00200" /db_xref="CDD:238121" misc_feature 55..159 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature order(88..90,100..102,118..123,157..162,214..216,226..228, 244..249,283..288,337..339,352..354,370..375,415..417, 469..471,484..486,502..507,541..546,607..609,619..621, 637..642,676..681,730..732,745..747,763..768,802..807, 859..861,871..873) /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 175..285 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 298..411 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 430..540 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 559..675 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 691..807 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 823..888 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 907..2544 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="Coatomer WD Associated Region from Coatomer Subunit Beta and Beta'; Region: Coatomer_WDAD_beta-like; cd22947" /db_xref="CDD:438572" misc_feature 907..1038 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:438572" misc_feature 1054..1158 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:438572" misc_feature 1174..1284 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:438572" misc_feature 1300..1401 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:438572" misc_feature 1411..1617 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:438572" misc_feature 1633..1755 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:438572" misc_feature order(1735..1737,1825..1827,2320..2328,2407..2412, 2473..2478,2485..2487) /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="coatomer beta'-subunit binding site [polypeptide binding]; other site" /db_xref="CDD:438572" misc_feature 1756..1830 /gene="SEC27" /locus_tag="CAALFM_C602260CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:438572" ORIGIN 1 atgaaattgg atgttgttaa acaattttca actcgctccg atagagtgaa aggaatagat 61 ttccatccaa ctgaaccatg gattttaaca actttatata atggtaaaat tgagatttgg 121 tcatatgcca ctaattcatt agttaaatct atacaagtca ctgaattacc agtacgtgct 181 ggtaaattca ttgctcgtaa aaattggatt gttgttggat ctgatgattt ccaaattcga 241 gtttataatt ataatacggg ggaaaaagtg actcaatttg aagctcatcc agattatatt 301 agaagtattg ccgttcatcc ttctaaaccg tacattttaa cttcaagtga tgatttaacc 361 ataaaattat ggaattggga tcataattgg aaattagaac aaacttttga aggtcatcaa 421 cattatgtca tgagtgtgaa ttttaatcct aaagatccta atacttttgc ttcggcatgt 481 ttagatagaa ccgttaaaat ttggtcctta ggttcatcac aaccaaattt cactttaatt 541 gctcatgaag ctaaaggagt caattatgta gattattatc ctcaagctga taaaccttat 601 ttgatcactt cttccgatga taaaacaatt aaagtctggg attatcaaac taaatcatgt 661 gttgccactt tagaaggtca tttatctaat gtttcatttg caattttcca tccagaatta 721 ccaattattg tttccgggtc tgaagatggt accattagat tttggaattc aaatactttt 781 aaattggaaa aatctataaa ttatagttta gaaagagctt ggtgtattgg aatattacct 841 aaatctaatg ttattgctgc tgggtttgat tccgggtttg ttattatcaa attaggtagt 901 gaagaaccgt tattttcaat ggattctaac aataaattga tttatgctaa aaattccgaa 961 gtttatcaat cagtgattaa accttccagt tctgaaggtt taaaagatgg tgaatcatta 1021 aatttacagc aaagagattt aggttctatt gaaattttcc cacaaacttt aaatcattct 1081 ccaaatggta gatacgctgc cgtgtgtggt gatggtgaat atatcgtata caccgcttta 1141 gcatggagat ctaaaagtta tggtagtgcc ttggattttg tttggaatag tcatgattca 1201 tctgctgctt gtccatttgc cattcgtgaa agtggggtta gtgttaaaat tttcaaaaat 1261 ttccaagaat atttaaccct tgatttgatt tatcaagccg ataaaatttt cactggttca 1321 ttattagggg tcaaactgga aggttgtatt tccttttatg attgggaaca tggtaaatta 1381 gtgagaagag tggatctaga tgatgatatt atcgatgtta tttggtctga taacggtgaa 1441 ttattagcca ttgtcaccac ttccaatttg ggtgaaatca gtagtaccgt tggagttaaa 1501 aagaataatg aaacttattt cttgagttat aatcatgaat tatttgaaga agcattggct 1561 aatggtgaat tggatgctga agaaggggca gaatctgctt ttgacgtttt gtatacttta 1621 cctacttcgg aatctatttt atcaggtaaa ttcattggtg atgtatttgt ttataccact 1681 ggtactacca atagattgaa ttattttgtt gggggtgaag ttataaattt gggtcatttt 1741 gatcgtaaat tctatattat tggttataaa gccaccgatg gtaaattata ccttattgat 1801 aaatcatttg atgttgtatc ttggtatgtg aatgctgaag ttttggaatt acaaacatta 1861 gttatgagag gtgatttaga acaatttgcc actcaaaata ttgttgttga aaaagaacat 1921 ggggaaaatg gagaagtaga agaagaggaa gtaccagatt tatcaaccat cactttagag 1981 aatttatcag aagaatattc tcaattaatt tcaagattca ccaagactga attgaatcaa 2041 ttatcgagat ttttcgaaaa attgggttat ttggcattat cattttcatt atctcaagat 2101 ttcgattcca aattccaact ttctttatct actggtaatt taaaacaagc ttatgattta 2161 ttatcagcac aagaaaaaga aactccatca ttatcattgg ccaattcaac taaatggaaa 2221 aaattgggtg atttagcttt aaataaatgg aatataaaac tagctcaaga aagtttttgg 2281 ttagctaaag attattcatc attattatta ctattatcat ctacacaaaa taaatcccaa 2341 ttaataaaat tagccgaagt ttgtgaatct aaaggtaaat ataacatagc atggcaatca 2401 tggtggttag tgggtgatgt tggtaaatgt tttgatttgt taattacaag tgaaagatat 2461 actgaagcag ttatatttgg taagaattat ggtgttgatc cagaaaaatt gattaaagcc 2521 attgaattat ggaaacaaac tttacataaa aaaaataaaa gtaaagttgc taatagatta 2581 attgatgatt ttagtaattt acaaaccaat ggatcaacag gtgctccatt gattgacttg 2641 gaaagcaagc aggataaaga tcaagagact acaacacagc cacaacaaga agcaaaagaa 2701 aagattgaag atgaagctgg tgcttcagaa gttcaacgtg aagaagtgga gaatgtggag 2761 gctgaaatac aacaagatga tgaagtgaca gcagaagaag aagaagaaga agatgcttag