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LOCUS XM_707342 1746 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_707342 VERSION XM_707342.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1746) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1746) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1746) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1746) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1746) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1746) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_707342.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1746 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1746 /gene="NAG4" /locus_tag="CAALFM_C604620CA" /db_xref="GeneID:3645978" CDS 1..1746 /gene="NAG4" /locus_tag="CAALFM_C604620CA" /note="Putative transporter; fungal-specific; similar to Nag3p and to S. cerevisiae Ypr156Cp and Ygr138Cp; required for wild-type mouse virulence and wild-type cycloheximide resistance; gene cluster encodes enzymes of GlcNAc catabolism" /codon_start=1 /transl_table=12 /product="Nag4p" /protein_id="XP_712435.1" /db_xref="CGD:CAL0000197244" /db_xref="GeneID:3645978" /translation="MSHATDSTLDNASVDSEKVRDFGDDLQNHPVQPTRSILSKIRSR DDDARSLVSNNKGVERIISDLQEGAGQLGPLEQPYDIKKIETHPDPHTDYNEADPWKY PIDSESGLRLVEWVDGDKHNPKNISKAKKWLYTLVLGAVCFVVALGSAIVTGDMERPA EYFGVSEEVIILASVTVFVIGFGVGPLVFAPMSEEVGRKPIYVVTLFIAVVFIVPCGA AKNIATLIVCRLIDGIAFSAPMTLIGGSLADIWEGPERGTAMAIFSAAPFLGPVCGPI FGGLLCDHAPTWRWIYWTFLIVAGVFYAIFIAIVPETHHGILLKKRAKKLRKETGDSR YRSFNELQIRSFGEVAKTSLLRPFVLLSELIVFLMTIYMAICYGLLYMFFFAYPVVYQ QGKGWSASLTGVMFIPIGVGVIIATIAAPFFNKDYNRRAQVYRDRGELPPPELRLIPM MIACWFVPVGLFAFAWSSYTWVSWAGPCFSGLAAGFGFCCLYNPANNYIVDSYQHYAA SALAAKTFVRSIWGACVPLFTIQMYHRLGDQWATSLMAFISLACCAIPYLFFFFGARV RTFSRYAYTPETNTK" misc_feature 403..1701 /gene="NAG4" /locus_tag="CAALFM_C604620CA" /note="Yeast Polyamine transporter 1 (Tpo1) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily; Region: MFS_Tpo1_MDR_like; cd17323" /db_xref="CDD:340881" misc_feature order(433..438,445..450,457..459,556..558,706..711, 715..723,730..732,790..792,799..804,811..813,1117..1119, 1126..1131,1138..1146,1153..1155,1225..1227,1237..1239, 1459..1464,1474..1476,1486..1488,1531..1533,1540..1545, 1552..1557,1564..1566) /gene="NAG4" /locus_tag="CAALFM_C604620CA" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340881" ORIGIN 1 atgtcacacg ctacagactc cacattagat aacgcaagtg ttgattcaga aaaagttaga 61 gatttcggtg acgacttaca aaaccaccca gtccaaccaa caagaagcat cctcagcaag 121 atccgctcaa gagatgacga cgctagaagc ttggtgtcca acaacaaagg ggtagagaga 181 atcatctcag acttacaaga aggcgcaggt caattaggac cattagaaca gccatacgat 241 ataaaaaaga tcgaaaccca tccagacccc cacactgact acaatgaagc cgacccttgg 301 aagtacccaa tcgacctgga atctggttta cgtttggttg aatgggtcga tggcgacaaa 361 cacaacccaa aaaacatctc caaagctaaa aaatggttat acaccttggt cttgggtgca 421 gtttgttttg ttgtggcctt ggggtcagca atcgttactg gggatatgga acgtccagca 481 gagtactttg gtgtttcgga agaagtgata atcttggctt cagtaacagt atttgtcatt 541 ggttttggtg ttgggccgtt ggtgtttgcc cccatgtcag aagaagttgg tagaaagcct 601 atttatgtgg tcaccttatt tattgcagtg gtatttatcg ttccttgtgg cgccgctaaa 661 aacatcgcca cattaattgt ttgtcgtttg atcgatggta ttgcatttag tgcaccaatg 721 acattgattg gtgggtcgtt agccgatatc tgggaaggtc ctgaaagagg tacggccatg 781 gccatttttt ctgctgctcc gtttttaggg ccagtatgtg gaccaatttt tggtggtttg 841 ttatgtgacc acgctccaac ttggagatgg atatactgga cattcttaat tgttgctggt 901 gtattttatg ctatatttat tgccatagtc ccagaaaccc accacggaat attgttgaag 961 aaacgtgcca aaaagttgag aaaagagaca ggagactccc gctacagatc attcaacgaa 1021 ttgcagatca gatcatttgg agaagtcgcc aaaacctccc ttttacgtcc ctttgtcttg 1081 ctcagcgagc tcatcgtctt cctcatgaca atatacatgg ccatctgcta cggtttgctt 1141 tacatgttct tctttgccta cccagtggtc taccaacaag gtaaaggatg gtcagcctcc 1201 ttgactggtg tcatgtttat tcccattggt gttggtgtga ttatcgctac tattgccgct 1261 cctttcttta acaaagacta caacagacgt gcccaggtct acagagatag aggagagttg 1321 ccaccaccag aactcagatt aatccccatg atgattgcat gctggtttgt tcctgttggt 1381 ctttttgcat ttgcctggtc ttcatacact tgggtatcct gggccggtcc atgcttctca 1441 ggattggctg caggttttgg cttttgctgt ttgtacaacc cggccaacaa ctatatcgtc 1501 gactcctacc aacactatgc tgcatctgca ttagctgcca aaacatttgt cagatccatt 1561 tggggtgcgt gtgtgcccct cttcactatc caaatgtacc acagattagg cgaccagtgg 1621 gccacctccc tcatggcctt catctcctta gcatgctgtg ccatcccata tttattcttc 1681 tttttcgggg caagagtcag aacattctct agatacgcct ataccccgga aactaatacc 1741 aaatag