Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_707320 3267 bp mRNA linear PLN 18-APR-2022 mRNA. ACCESSION XM_707320 VERSION XM_707320.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 3267) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 3267) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 3267) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 3267) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 3267) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 3267) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_707320.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3267 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>3267 /gene="ILS1" /locus_tag="CAALFM_C604520WA" /db_xref="GeneID:3645956" CDS 1..3267 /gene="ILS1" /locus_tag="CAALFM_C604520WA" /note="Putative isoleucyl-tRNA synthetase, the target of drugs including the cyclic beta-amino acid icofungipen/PLD-118/BAY-10-8888 and mupirocin; protein present in exponential and stationary growth phase yeast cultures" /codon_start=1 /transl_table=12 /product="isoleucine--tRNA ligase" /protein_id="XP_712413.1" /db_xref="CGD:CAL0000188404" /db_xref="GeneID:3645956" /translation="MSLQESNNNIPQGAFSFPKEEEAVIKHWDDVNAFQRTLELTEDL PPFAFFDGPPFATGTPHYGHILASTVKDIIPRYATMNGYHVERRFGWDTHGLPVEHEI DKKLNITSKEDVYAMGIDKYNAECRAIVMRYADEWRRTIKRLGRWIDMDNDYKTLYPE FMESVWWAFKELFNKDAVYRGLRVMPYSTACTTPLSNFEAQQNYKEVNDPALTISFPL LDNEDTCLVAWTTTPWTLPANLALAVNPKFEYVKIFDEEKKKNFILLESLISTLYKKP KSAKFKVVEKILGKDLVGLKYKPLFNYFYEDFKDTGFRVIPADYVTNDSGTGIVHQAP SYGEEDFNSTKAAGVINEKKLPPSIVDDSGRMESNVPEIAGMYFKDADKVIIKKLSEE GRLLVNTQVKHSYPFCWRSDTPLMYRTVPAWFVRIGEVIPEMLDNVEKTNWVPSNIKD KRFSNWIANARDWNISRNRYWGTPIPLWVSDDFEEMVCVGSIQELRELSGRDDITDIH RESIDSITIPSKKGKGQLKRIEEVFDCWFESGSMPYASKHYPFENEKKFLDAFPANFI SEGLDQTRGWFYTLTVLGTHLFKTAPYQNVIVTGIVLAADGKKMSKRLKNYPDPTLVL EKYGADALRLYLINSPVLRAETLKFKEEGVKEIVSSVLLPWYNSYKFLKDAADLFKKD NGKDFVYDNSLHSTNVMDRWLLASIQSLIKFIHEEMTGYRLYTVVPRLLHFIDDLTNW YIRFNRRRIKGYASEDVEDTQKGLNTLVEALLTLSRAMAPFTPYLADGIYQRIKVYFK QEDLEKIAINPKNVDLRSVHFLSYPSVRQELFDEKIEVAVARMQKVIDMARNIREKKM ISLKTPLNELVVLSADADLLKDIDSLKGYISDELNVRNVVITSDEAKYCVEYSCVADW PVLGKKLKSDAKKVKAALPKVSSEEVQRFAECGKITVDGIDLVTEDLQVQRGLPASKA EEGQEFRSHQDVLIILDVNLHPELESEGLARELINRIQRLRKKAGLNTTDDVQVQYRV VKDTIDLPKIIKDNEELLLKSTKYPIEELKEAQDSANVITDEEQTINDTVFNLRLLKI " misc_feature 43..3255 /gene="ILS1" /locus_tag="CAALFM_C604520WA" /note="aminoacyl-tRNA ligase; Region: PLN02882" /db_xref="CDD:215477" ORIGIN 1 atgtcgttac aagaaagcaa caacaatatc cctcaaggtg cttttagttt tcctaaggaa 61 gaagaagcag ttatcaaaca ttgggatgat gtcaatgctt ttcaaagaac tttagagttg 121 actgaagatt taccgccatt tgcgtttttt gacggaccac catttgccac tggtactcct 181 cattacgggc acattttggc ctctacagtc aaagatatta tcccacgtta tgccaccatg 241 aacgggtatc atgtggagag aagattcggt tgggataccc acggtttgcc agtagaacat 301 gaaattgaca aaaagttgaa cattacctcg aaagaagatg tttatgccat gggtattgac 361 aagtacaatg ctgaatgtcg tgcaattgtg atgagatacg ctgatgaatg gcgtagaaca 421 atcaagagat tggggagatg gattgatatg gacaacgatt acaaaacctt gtaccctgaa 481 tttatggaat ctgtgtggtg ggctttcaag gagttgttta acaaggatgc cgtttataga 541 ggtttgaggg tcatgcctta ttccactgct tgtaccacac cattgtcgaa ctttgaagcc 601 caacaaaact ataaagaagt taacgaccca gcacttacta tttcgttccc attgcttgat 661 aacgaagaca cttgtttggt tgcttggact accacgccat ggaccttacc tgcaaatctt 721 gcgttagcag ttaatccaaa gtttgagtat gtaaagattt ttgatgagga aaaaaagaaa 781 aactttattc ttttggaaag tttgatcagt actttgtaca agaaacctaa atcggccaag 841 ttcaaggttg ttgagaaaat tttgggtaaa gatttagttg gactcaaata caagccattg 901 ttcaattact tttacgaaga tttcaaggat actgggttca gagttattcc agccgactat 961 gttaccaacg attctggtac tggtattgtc catcaagccc catcctatgg tgaagaggat 1021 ttcaacagta ccaaagccgc aggagtcatc aacgaaaaga agttgccacc aagcattgtt 1081 gatgattcag ggagaatgga atccaatgtt cctgaaattg ccggaatgta ctttaaggat 1141 gccgacaagg ttattatcaa gaaattgctg gaagaaggta gactcttggt caacacccaa 1201 gtaaagcact cgtacccatt ctgttggaga tcagatactc cattgatgta cagaaccgtc 1261 cctgcatggt ttgttagaat tggcgaagtc attcctgaaa tgttggataa tgttgaaaag 1321 acaaactggg ttccttccaa cattaaagat aagagatttt ccaactggat tgccaatgcc 1381 agagactgga acatttccag aaatagatac tggggtacac caattccatt atgggtttct 1441 gacgattttg aagaaatggt gtgtgttggt tctatccaag aattaaggga gttgtctggt 1501 cgtgatgata ttactgatat tcaccgtgag agcatcgatt ctattaccat cccatccaaa 1561 aagggtaagg gccaattgaa gagaattgaa gaagtttttg attgttggtt tgaatctggt 1621 tctatgccat atgcatccaa acattatcca tttgaaaatg aaaagaagtt tttggatgcc 1681 tttccggcaa atttcatttc cgaaggttta gatcaaacta gaggttggtt ctacacattg 1741 actgtattgg gtacccattt gttcaaaacc gcaccatatc agaatgttat tgtcactggt 1801 attgtgttgg ctgctgatgg taaaaagatg tcgaaacgtt tgaagaacta cccagaccca 1861 accttggtgt tggagaaata tggtgccgat gcgttgagat tgtacttgat caattcccca 1921 gtgttgagag ccgaaacatt aaagtttaag gaagaagggg tcaaggaaat tgtttccagt 1981 gtgttgttgc catggtacaa ctcctacaag tttttaaagg atgctgctga ccttttcaag 2041 aaggataatg gcaaagactt tgtttacgac aacagtttac attcaaccaa cgttatggac 2101 agatggttat tagcatcaat ccaatctttg atcaagttta ttcacgaaga aatgactggg 2161 tacagattat atactgttgt tcctagattg ttgcatttca ttgacgattt gaccaactgg 2221 tacattagat tcaaccgtcg tagaatcaag ggatatgctt ccgaagatgt tgaagacacc 2281 caaaagggtc tcaatacatt ggtcgaagcg ttgttgacat tgtctagagc aatggctcct 2341 ttcactccat acttggctga tggaatttac caaagaatca aggtatactt taagcaagaa 2401 gatttggaaa agattgctat taaccctaag aatgttgact tgagatcagt gcatttcttg 2461 agctacccat cagtgagaca agagttgttt gatgaaaaga ttgaggttgc tgttgcaaga 2521 atgcaaaagg ttattgacat ggccagaaac attagagaaa agaagatgat ttcattaaag 2581 actccattga atgagttggt ggttttgagt gcagatgctg atttgttgaa ggacattgat 2641 tctttgaaag gatacattag tgatgagttg aatgtgagaa atgttgtcat cacatcagac 2701 gaagccaagt actgtgttga gtactcgtgt gttgctgatt ggccagtgtt gggtaaaaag 2761 ttaaagtcag acgccaaaaa agtcaaggca gcattgccta aagtttcctc tgaagaagtt 2821 caaagatttg ctgagtgtgg taaaatcact gttgatggta ttgacttggt gactgaagat 2881 ttgcaagtgc aaagaggctt gccagcttct aaagccgaag agggccaaga gtttagatct 2941 caccaagatg ttttgattat tttggatgtc aatttgcacc ctgaattgga aagtgaaggt 3001 ttggcaagag agttgattaa ccgtatccaa agattgcgta aaaaggctgg tttgaatacc 3061 actgacgatg ttcaagttca ataccgtgtc gtcaaagata ctattgattt gccaaagatt 3121 attaaagaca atgaagagtt gttgttgaaa tcaaccaaat atccaattga ggaattgaag 3181 gaagcacaag atctggctaa tgtcattacc gatgaagagc aaacaattaa cgatacagtg 3241 tttaatttgc gtttattaaa aatttag