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LOCUS XM_707317 4278 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_707317 VERSION XM_707317.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 4278) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 4278) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 4278) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 4278) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 4278) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 4278) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_707317.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..4278 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>4278 /gene="TSM1" /locus_tag="CAALFM_C604500CA" /db_xref="GeneID:3645953" CDS 1..4278 /gene="TSM1" /locus_tag="CAALFM_C604500CA" /note="Putative transcription initiation factor TFIID subunit; transcript is upregulated in clinical isolates from HIV+ patients with oral candidiasis; Nrg1-regulated" /codon_start=1 /transl_table=12 /product="Tsm1p" /protein_id="XP_712410.2" /db_xref="CGD:CAL0000192999" /db_xref="GeneID:3645953" /translation="MPSASNHGTPRMVGGLINTPLARHINAKKVVNPVIQSFKVAHQR VNIDIDLSSNSIDGFTELTVIPTSNKLKVIKLDCREMEIKDVLINGSRSLNYVYDDLL YINNPEYFEHCIDSKVINVMDLYSDTFNVHQHHLIRSKLDYIFKNPKHDEESLDYNTQ ELKILLPDNMKFELTDINSIQTPSGTSHPGTTTPSHLKSKGTGNEYYYTPIQLKVVYK VKNPQNGVNFVTNEDIEKKLWHAYTTNSNYNVSTSSWVPCIDDLSSRCTWSLEVNIPR TLKDIGNPRMIGSKEALDYQQMRRKRSGEAIQNFAQQNNDSDDDDDDDEDIGNYDMVV PSGDFNNVKETPHPIDLSKKVVSWSIFNPVCAHHVGWAVGCFESFVLSDESAGAKEDD EEDTVLRGDDAENVNNPVTIYSLPEDVEWAKNTSIITNKALDFFSKEYGSFPFSSYAI VFVRYSPCQTSNFAGLSVMSSKLLYPPDMIEPMFTVTDILLKSIATQWAGINISPQTF NDMWCTIGIAGFMAISFIKKLMGANEFRYRLRKQMDKVVAEDVGRHAIASQPFKYPVS EDDLSFVWLKSPIVLFILDNRMTKTDKSFGLSRVLPKLFLQAMSGSLPNGTLNTEHFR YVCEKVNRNKLENFFKQWVFGAGAPVFRISQRFNKKKGMIEMNIRQVQHHERTPKKLD SSSFIGDAVAYLDNEPLPPQQHVFTGPMTIRVHESDGSPYEHIVELKEANTKLDIQYN SKFRKIKKKDDGVDPGIAFNQFGDVLLSHAEMQEWNLRDWDKRDEESLSSEPFEWIRG DVDFEWIARIDIKQPDFMFGSQLVYDRDIEAQLEAVRYFGELEKTNTTYCTALTRTLM DDRYFYGVRIAAAQALADCSNEANNFIGLEYLLKAFGKLYCFDDSFIPKSNDFSDFRS FMLQSAFPRILCGVKDNDGKVPKRIQNLLLNLVKFNDNSMNAFVDSLYVSELVVSLVT STVSGWRNDIEEYNDTEFAGKVSSELFRLQKLDRWIPSYQNIIEVTCIQQNIRMALVG ARKLSFEELLYMTLDKYPMEARVEAFRGILELGGLKNKSILQYFLKVCLLNFERPLYR SKLIEALVKSVSSVATYGGVSTLDDPEFHTKVDTNVKSSSNRIIIDDGSQDNLAMKSK RDDMARASIKGAIEILRRDFSEGQGLRETLWELLHTSLIGLHERRSIFCLCQVLFKGV DSYVVKLPVPSMPVEEYVRKKIVAKVSNYPGQVTIKREGRFKIQLATRKSVIAKVKSE TEHKPLKISLKPVIEAKQKAASAVHVDPVIPTKVTFKLPGHRLAGFAKKVELDGTLVT IKLGRDMKSKVDALAHRYVRINTKRRKIEVSKVPFIEKEEGSNTSGITEVSRNTGEKE DAKSPSPILVKKEKKRPKVYIHFGGNVKKPDQGSSSSSSKEGSTEVE" misc_feature 118..1929 /gene="TSM1" /locus_tag="CAALFM_C604500CA" /note="TATA binding protein (TBP) associated factor 2; Region: M1_like_TAF2; cd09839" /db_xref="CDD:341074" misc_feature order(670..672,730..732,736..738,751..753,760..762, 1366..1368,1375..1377,1435..1443,1597..1602,1609..1614, 1618..1623,1627..1632,1639..1641,1657..1659,1921..1923) /gene="TSM1" /locus_tag="CAALFM_C604500CA" /note="intramolecular interface [polypeptide binding]; other site" /db_xref="CDD:341074" misc_feature order(1771..1776,1783..1785,1795..1797,1807..1809, 1876..1878) /gene="TSM1" /locus_tag="CAALFM_C604500CA" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:341074" ORIGIN 1 atgccgtctg catctaacca tggaacgcca agaatggttg gtggactaat aaatactcca 61 cttgcgagac acattaatgc aaaaaaagtt gttaacccag tgattcaatc ctttaaagtt 121 gcccatcaaa gagttaacat cgatattgac ctatctagca atagtattga tgggtttaca 181 gaattgacag tcatacctac atcgaataaa cttaaagtga taaagttgga ttgtcgtgag 241 atggaaataa aagatgtttt gattaatgga agtaggtcat tgaattatgt atatgacgat 301 ttattataca tcaacaaccc cgagtatttt gagcactgca tcgactctaa agtcataaat 361 gttatggact tgtactccga tacattcaat gtacatcagc accatctaat acggtctaaa 421 ttggattaca tctttaagaa tcccaagcac gacgaagaga gtttggacta caacacccag 481 gaacttaaga ttcttttgcc agacaatatg aagtttgagt tgaccgatat caattctata 541 caaacaccaa gcggaactag tcatccaggg actactacgc ccctgcatct aaaatccaag 601 ggcacgggaa acgagtacta ctacacacct atacagttaa aggttgttta caaagtcaag 661 aatccacaga atggagtcaa ttttgttaca aacgaagaca ttgaaaagaa gctctggcat 721 gcatatacaa caaactccaa ctacaacgtt tccacgtcat catgggtccc ctgcattgat 781 gatttgtcta gcagatgcac atggtcgttg gaagtaaata ttccgagaac actcaaagac 841 attggaaatc cacgaatgat aggatccaag gaagcgttag attatcaaca aatgagaaga 901 aagcgatcag gcgaggctat acaaaacttt gcccagcaaa ataatgatag tgatgatgat 961 gatgatgatg acgaggatat tggcaactac gacatggttg ttccatctgg tgatttcaac 1021 aacgtcaagg aaacgccaca ccccattgat ttgtcgaaaa aagttgtgtc gtggtctata 1081 ttcaatcctg tttgtgccca tcatgtaggc tgggccgtgg gatgttttga aagctttgtt 1141 ctttctgatg agtcagctgg ggcaaaagag gatgatgagg aagatacggt gctaagaggt 1201 gacgatgctg agaatgtgaa taatccagtg acaatctatt cacttccgga ggacgttgag 1261 tgggcaaaaa acactagtat tatcaccaac aaggcgttgg atttctttct gaaagagtat 1321 gggtcgttcc catttagttc ttatgccata gtatttgtgc ggtacctgcc gtgccaaacc 1381 agtaactttg ctggactctc ggtaatgtca tcaaagttgt tgtacccacc agatatgatt 1441 gaaccaatgt ttactgtaac tgatatacta ttgaaaagta tagccacaca atgggctggc 1501 atcaatatat cgccacaaac attcaatgat atgtggtgca ccatcggtat tgctgggttt 1561 atggcaatct cgtttatcaa aaaattgatg ggtgctaatg aatttcggta taggctacgc 1621 aaacaaatgg ataaggtggt agctgaggat gtggggcgac atgctattgc atcccagcca 1681 tttaagtacc ctgtttcgga agacgattta tcgtttgtgt ggttgaaatc gcccattgtt 1741 ttatttattc ttgataatag aatgacaaag accgacaagt catttgggtt gtcgagggtt 1801 ttgccaaagt tatttcttca ggcaatgtca ggaagtttac ccaacggcac attgaacaca 1861 gaacatttcc gttacgtctg tgaaaaagtg aatcgaaaca agttggaaaa tttcttcaag 1921 caatgggtgt ttggtgctgg ggcgcctgtt ttccgaatca gccaaagatt taacaagaaa 1981 aaggggatga ttgaaatgaa tatccgtcag gtccagcacc atgaaaggac acccaagaaa 2041 ttggatagtt ctagttttat tggtgatgca gttgcctact tggacaacga accgctacca 2101 ccgcaacaac atgtgtttac tggccctatg actataagag tgcatgagtc tgatgggtca 2161 ccttacgagc atattgtcga gttgaaagaa gcaaacacca aattggatat tcaatacaat 2221 tcaaagttta gaaagattaa aaagaaggat gatggagttg atcctggtat agcgtttaat 2281 caatttggtg atgtgttact atcccatgcc gagatgcaag agtggaattt acgtgattgg 2341 gataaaagag atgaggaatc tttgagtagt gagccatttg aatggatcag gggcgatgtg 2401 gatttcgagt ggatcgctcg aatcgacatt aagcagccgg attttatgtt tggatcgcag 2461 ttggtctatg atcgagacat tgaagcacaa ttagaggctg tgcggtattt tggtgagtta 2521 gagaaaacaa acacgacgta ctgtacagct ttaacgagaa cattaatgga tgaccgttat 2581 ttttatggag ttaggattgc tgctgcacag gctttagctg attgttcaaa tgaagcaaac 2641 aattttattg gtttagagta cttgctcaag gcatttggca agttgtattg ttttgacgac 2701 agctttattc caaaatcaaa tgattttagt gattttagga gctttatgtt gcaaagtgca 2761 ttccctcgaa ttttgtgtgg cgtcaaagat aatgacggta aagttcccaa aaggatacag 2821 aatttgttgc ttaatctagt gaaattcaat gacaactcga tgaacgcgtt tgtcgatagt 2881 ctctatgtga gcgagttggt cgtttcgcta gttaccagta ctgtcagtgg atggaggaat 2941 gacattgaag agtacaatga tactgaattt gctgggaaag tactgtccga actttttaga 3001 ctccaaaagt tggatcgttg gataccgtct taccaaaaca ttattgaagt aacatgcata 3061 cagcagaata tccgaatggc tttggttggt gctcgaaaat tgtcgtttga agagttgttg 3121 tacatgacat tggataaata ccccatggag gcgagggtgg aagcgtttag gggtatattg 3181 gagttgggtg gattaaaaaa caaaagcatc ttacagtact ttcttaaggt ttgtttgttg 3241 aactttgaac gtccactata cagaagcaag ttgattgagg cattggtgaa gtcggtgtcg 3301 tcagttgcaa cttacggcgg tgtgtctact cttgacgatc cagaatttca cacaaaagtg 3361 gacactaatg ttaaaagctc ctccaaccgt attattattg atgatggatc gcaagataat 3421 ttagcgatga aatcaaagag agatgatatg gctcgtgcaa gtataaaggg tgccattgag 3481 attttgcgaa gagacttttc tgagggccaa ggtttgcgtg aaacgttgtg ggagttgctt 3541 cacacatcat tgattggttt gcatgaacgt agaagtatct tttgtttgtg ccaggtgttg 3601 ttcaaagggg tggattcata tgttgtgaag ttgccggttc caagtatgcc agttgaagag 3661 tatgttcgga aaaagattgt tgccaaagtt tcgaactatc caggacaagt gacaatcaaa 3721 cgagaaggaa gattcaagat acagttggct actcgaaagt ctgtaatagc caaggtgaag 3781 ctggaaacag aacacaagcc attgaagata tcactaaagc ctgttattga ggctaaacag 3841 aaggctgcat cagctgtgca tgttgatccg gttattccta caaaggtcac ttttaagttg 3901 cctggccata gactagctgg ttttgcgaaa aaagtggaac tagatggaac gttggtgact 3961 attaaacttg gacgtgatat gaaatcaaaa gtggatgcgt tggcccatcg atatgtgaga 4021 ataaatacaa agaggagaaa aattgaggta tcaaaggttc catttattga aaaagaagag 4081 gggtctaaca cttctggtat aactgaggta agtcggaata ctggagagaa agaagacgca 4141 aaaagtccat ctcctattct tgtcaaaaag gagaaaaaga gacctaaagt ttacattcat 4201 tttggtggaa atgtgaaaaa acctgaccaa ggtagtagta gtagcagctc taaagagggt 4261 tcaacagaag tagaatga