Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_707313 2331 bp mRNA linear PLN 18-APR-2022 (CAALFM_C604470CA), partial mRNA. ACCESSION XM_707313 VERSION XM_707313.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2331) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2331) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2331) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2331) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2331) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2331) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_707313.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2331 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2331 /locus_tag="CAALFM_C604470CA" /db_xref="GeneID:3645985" CDS 1..2331 /locus_tag="CAALFM_C604470CA" /note="Ortholog(s) have ubiquitin-protein transferase activity and role in protein ubiquitination, ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" /codon_start=1 /transl_table=12 /product="ubiquitin-protein ligase" /protein_id="XP_712406.2" /db_xref="CGD:CAL0000184186" /db_xref="GeneID:3645985" /translation="MAIDRQTLVFFIIMFIFLSLPSGNEQPHSDKDRETLQTYQQSIR NSSSILQNSTYASGYGNITGYQLSYKDQLQGKSVADWPIHEFSPSHPWVESQEYSILP DEISQRVRKFWGISPVKDKAYLLNISGRADGEFQLIESKVKPTKLSIPKYLKEYYKSR ENSFTSDEPTEDNREYFKKPIDKKGNVTTNEGVVSIAIKGSQYNFDDPKLSRFVGPED KVDNAICVSMDLDIKDYPEIEDHSLVLNGVYFQETGSLIGVTNSAKFYGNYGLSHLTM GDKNFAIAKTLMTQFSNMTNDNELTMDDMNYGIVKAHEQCEYIAFIQFAKTNFTHERL REIDEELETPTGRPLPHEIPKIVIEEYLLYSPDCGKVLSLKPGSVFSGKKTEVTRAQM RNVLTGILVLVGFQLFLVLRQIKNAQTPGQLSLISSKTLFLLGYQDSLVAIMTLLLST ITVELYLILACIATIAFISCGVFEMRFMVSVLTTQANERGTSWWEILRGANAEREQQV PEEGPILPIANDPPPQETVPNQAWQETSYSNSIFASGFSITIVSMFIIFSSLQWRIQY RKAFEYVSLVFVNSFWVPQFFRNTLKNRRKSFTWEFAFGTSVIRVLPIYYFALVKGNP LRHRYDPILCIVVSVWLGVQLLLLVLQNQFGPRFWINEKWLPKAYEYQRLLSMKDLQE EGFSSELLENLKTTMSQSEDQDIVTSQCMCPICMTDVDLPISVKEDKLEEAKRKVNIK GFMITPCHHIFHTECLENWMKYKLQCPVCRKSLPPI" misc_feature 943..2325 /locus_tag="CAALFM_C604470CA" /note="RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]; Region: COG5540" /db_xref="CDD:227827" misc_feature 2116..2325 /locus_tag="CAALFM_C604470CA" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order(2134..2136,2143..2145,2239..2241,2245..2247, 2254..2256,2263..2265,2296..2298,2305..2307) /locus_tag="CAALFM_C604470CA" /note="cross-brace motif; other site" /db_xref="CDD:438111" ORIGIN 1 atggctatcg atagacagac ccttgtattt tttataataa tgtttatatt cttgtctttg 61 ccttcgggta atgagcaacc tcattcggac aaggatagag aaacgttaca gacataccaa 121 caactgatac gcaactctct gtcaatacta caaaattcaa cgtatgcact ggggtacggg 181 aatatcaccg ggtaccaact atcgtacaaa gaccagttac aaggcaagtc agttgctgac 241 tggccaatac acgagtttag tccgtcacat ccgtgggtgg agagccaaga gtattctatt 301 ttgcctgatg aaattagtca gagggtgcgc aagttttggg ggattagtcc tgttaaggac 361 aaggcatatt tgttgaatat atctggcaga gcagatggcg agtttcaatt gatagagagc 421 aaagtaaaac ctacaaaatt atcaattcca aagtacttaa aagagtatta caagtcccgg 481 gaaaattcgt ttaccagtga cgagcctacg gaagataatc gtgaatactt taaaaaacca 541 attgataaaa aagggaatgt caccactaat gaaggcgttg tatcgatagc aattaaaggg 601 tcgcagtaca attttgacga cccaaagctt tcaagatttg ttggcccgga ggataaagtt 661 gataatgcta tttgcgtgtc tatggatttg gatattaagg attaccctga aattgaagat 721 cacagcttgg tgttgaacgg agtttatttt caagagacgg ggtctttaat tggagtcaca 781 aactctgcta agttttatgg aaattacgga ctaagtcacc taactatggg tgataaaaac 841 tttgcaattg ccaaaacact tatgactcag tttagtaata tgactaatga caatgaactt 901 actatggatg atatgaatta tggtatagtc aaggcacacg agcagtgcga gtacattgca 961 tttatccaat ttgcgaaaac taatttcacc cacgaacggt tgcgggagat agacgaagag 1021 ttggaaacgc ctacaggtag accgttacct catgaaattc caaagattgt tattgaagaa 1081 tatctacttt actcgccaga ttgtggcaaa gtgttgtctc taaaacccgg aagtgtgttt 1141 tccggcaaaa agaccgaagt cactcgagca caaatgagaa atgtgttaac tggtatattg 1201 gtgttggtcg ggtttcagtt atttttggta ttgcgtcaga ttaaaaatgc ccaaacacca 1261 ggacaattgt cgcttatttc cagcaaaaca ttgtttttac ttggttatca agattcgttg 1321 gtggcaataa tgacattgtt gctttcaacc ataacggttg aactctatct catcttggca 1381 tgtattgcaa cgatcgcatt tattctgtgt ggtgtatttg aaatgagatt tatggtcagt 1441 gtgttgacga cccaggccaa tgagagagga actagttggt gggagatatt gcgaggtgcc 1501 aatgctgagc gtgaacaaca ggtaccagaa gagggaccaa tcttgccaat cgccaacgat 1561 ccaccaccac aagaaactgt ccctaaccaa gcatggcagg aaacatcgta tagcaattcg 1621 atatttgcta gtgggttttc tataacaatt gtgtctatgt ttatcatctt ttcgtcattg 1681 cagtggagaa tacagtatag aaaagcattt gagtatgtga gtttggtgtt tgttaattca 1741 ttttgggtgc cacagttttt cagaaacact ttgaagaaca gacgcaagtc gttcacctgg 1801 gaatttgctt ttgggacaag tgtaatacga gtcttgccta tctactattt tgccttggtt 1861 aagggtaatc cattgagaca tagatatgac cctattttgt gcattgttgt tagtgtgtgg 1921 cttggcgtgc aattattgtt gttagtgttg cagaatcaat ttgggccaag gttctggatt 1981 aatgaaaagt ggttgccaaa ggcttacgag taccagaggt tgttgtcgat gaaggattta 2041 caagaggaag ggttttcaag cgagctactt gagaacttga aaacaacaat gagccaactg 2101 gaggaccaag atattgttac atctcagtgt atgtgtccaa tatgtatgac cgatgtggat 2161 ttgcctatac tggtgaaaga agacaaactt gaagaagcaa aaagaaaggt aaacatcaag 2221 gggtttatga ttacaccgtg tcatcacatt tttcacactg agtgcttgga aaactggatg 2281 aagtataagt tgcagtgccc tgtatgtaga aagagcttac cgccaatata g