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LOCUS XM_707217 4281 bp mRNA linear PLN 18-APR-2022 helicase/ssDNA endodeoxyribonuclease (DNA2), partial mRNA. ACCESSION XM_707217 VERSION XM_707217.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 4281) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 4281) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 4281) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 4281) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 4281) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 4281) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_707217.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..4281 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>4281 /gene="DNA2" /locus_tag="CAALFM_C600320CA" /db_xref="GeneID:3646072" CDS 1..4281 /gene="DNA2" /locus_tag="CAALFM_C600320CA" /note="Protein similar to S. cerevisiae Dna2p, which is a DNA replication factor involved in DNA repair; induced under hydroxyurea treatment" /codon_start=1 /transl_table=12 /product="bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease" /protein_id="XP_712310.2" /db_xref="CGD:CAL0000193143" /db_xref="GeneID:3646072" /translation="MSGINEDASSTTKRFKDSNEAIKPVKRLKKTTYFPVNNLTNPQT NQSNIQKSPIRPIDINSITTKVNPVQEINRNNTDNLTKVQKQSELNFLQENSDDSFDG IRWKESPEIKGSHKQMEIKNSFGGLPSSPLKNINPESENVDDRTSDVLNRYGSDFENV SKRRTPLMSKTRSDITSSSSNHKKQTNEISQLQRAKSGDVLKVKSISGSITDSFQNTL NNWINKFETDPQDDQNPNSLPDTVEMNKTIPKISTPPNPNTSIQSEDPFSDDDDLIQL LHSKTLPECPQSQPVSNDNTSIKPPMENASDDGESSDDPFTDDDSELMEVLKTQTPSV TSAFTKSFQRGIQNFEKLNIENKYEEQDIEKVSDLIYDRVTTQRFRIVNIIEQYYGPK SEKQLILEVVNSSRDKSKLVVRGEYCELELEKGDVIHVIITDSARPTLVDDMHNLLIW NPDIMLSATTISQQLNCSRKTVILSRYKFPGTSTIPIIVGEIVHFIFQECICTERWDM EFMSQVLDQLLSQYMLAIFGIGKELKDVRDEVVKHFDYLETWFKTYYKQPLSKKNLID ETSEKEQIMFAVEEALDIEEEIGSPIFGIKGKIDATITAKFENKKLKGQYMIPMEIKT GKEYIYHHAQASLYSLLFKDRYDKNIDSYLLVYTKEKVTKKCNIRISELRSLVNLRNR VSNYIKDNLKLPPLVKNSNCDRCEIRSACMTLNHLTENGTKEESGIEEELYEAITRDI FENDSYRKYFQHWDELISKEEDVMGRAVKELWTIPAEDQEFQGKCFSGMTITNSNETE SNNFLFSSTHHDKSQDQQFVYTFAKAENPSRFNLAKSQVTINDKVIISDEEGHFALTT GYVKQITKDFVVVSTRRKIITSDYKLKNYNKANNQVFQSVIRSTQQNIRTTTKKRFRI DKDRMFYGLGLARYNVLSLFLPNGASQLRKLVVDLEKPTFTASSWEIPDAETFNPDQI AALKKVFSADDYSLIVGMPGTGKTTVIAQLIKVLVAQRKSVLLTSYTNSAVDNILLKL KDLDIEFLRIGYPQRVHKDIKDYIPEFKDSITTYEQYVNTYMRPKVVATTCLSITDVC FNLRYSFDYCIVDEASQITLPVSLGPLRFAKKFVMVGDHDQLQPLVTHPDKRVKQELS RSLFSLLAKEHPDSVSHLTYQYRMNSDIMNVCNTLIYNNKLKCGSEQVAQNSLKIPHP EVLNSFIGEDVSPDSQWIHKIFDEKNNVLFLDYDAVPAVEENVGEMVINTKEALLIQQ IVNALVHGGVKEDEIGVMSFYRAQLSVLKKNLNNLKDLEILTADQYQGRDKECIIISL VRSNERKFAGDLMKEYRRLNVATTRAKTKLIILGSRFTLSTNELTKTFIDYLENEKWY YPLPKSAHKIYKIPEVNGPSPTRSQKSQDSPILNRNPILKNVVQDITR" misc_feature 1204..1809 /gene="DNA2" /locus_tag="CAALFM_C600320CA" /note="DNA replication factor Dna2; Region: Dna2; pfam08696" /db_xref="CDD:462565" misc_feature <1690..2133 /gene="DNA2" /locus_tag="CAALFM_C600320CA" /note="CRISPR/Cas system-associated protein Cas4; Region: Cas4_I-A_I-B_I-C_I-D_II-B; cl00641" /db_xref="CDD:469855" misc_feature 2902..3507 /gene="DNA2" /locus_tag="CAALFM_C600320CA" /note="DEXXQ-box helicase domain of DNA2; Region: DEXXQc_DNA2; cd18041" /db_xref="CDD:350799" misc_feature order(2902..2904,2911..2913,2980..2991,3085..3087, 3502..3507) /gene="DNA2" /locus_tag="CAALFM_C600320CA" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350799" misc_feature order(3052..3060,3238..3240,3244..3246,3397..3399) /gene="DNA2" /locus_tag="CAALFM_C600320CA" /note="nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:350799" misc_feature <3226..4125 /gene="DNA2" /locus_tag="CAALFM_C600320CA" /note="Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]; Region: DNA2; COG1112" /db_xref="CDD:440729" ORIGIN 1 atgctgggaa taaacgaaga cgcgtcactg acaacaaagc ggtttaagga ttcgaacgaa 61 gccatcaaac ctgtcaagag acttaaaaaa accacgtatt tcccagttaa taacctcact 121 aatccccaaa ctaatcaatc aaatattcaa aagtccccga ttcgaccaat tgatataaat 181 tcaataacca caaaggtcaa ccctgttcag gaaattaaca gaaacaatac tgacaattta 241 acaaaggtac agaagcaact ggaactaaac tttctccagg agaattctga tgatagtttt 301 gatggaattc gctggaagga aagccctgaa atcaaaggga gccataagca gatggaaata 361 aaaaactctt ttggtgggtt accttcatcg ccattaaaaa acattaaccc agaatctgag 421 aatgtggatg atcgtacatc agacgttttg aacagatatg gatctgattt tgaaaatgtt 481 tctaaaagac gaactccatt aatgtcaaag acgcgttcag atatcacatc ttcaagcagc 541 aatcacaaaa aacaaaccaa cgaaatatcc caacttcaac gagcaaaatc tggggatgta 601 ctcaaagtca aatcaatttc agggtctatt accgactcct ttcaaaacac tttgaataat 661 tggataaata aatttgaaac tgatccacaa gacgaccaaa atccaaacct gttaccagac 721 actgttgaaa tgaataaaac tattccaaaa atcagtaccc cacctaaccc aaacacgtca 781 attcaatctg aggatccatt ctctgacgac gatgatttaa ttcaattgtt gcactcaaaa 841 accttaccag agtgcccaca atcacagcct gtctccaacg ataacacatc aataaaacca 901 cctatggaaa atgcatcaga tgatggcgaa tcaagtgacg atccgtttac agatgacgac 961 tctgaattaa tggaagtatt gaaaacgcag acacccagtg ttacatctgc atttaccaaa 1021 tctttccagc gaggtattca aaactttgaa aaactaaata ttgaaaacaa atatgaggaa 1081 caggatattg aaaaagtgct ggacttgatt tatgatagag taacaaccca gagatttcga 1141 attgtgaata tcatcgaaca gtattatggt cccaagagcg aaaaacaatt aattttagaa 1201 gttgtaaatt cgctgagaga taaatcaaag ttggttgttc gtggtgagta ctgcgagttg 1261 gagttagaaa aaggggacgt gattcacgtt ataatcaccg atagtgctcg tccaacatta 1321 gttgatgaca tgcataacct attaatttgg aacccagaca ttatgctatc agcaacgaca 1381 atttcccagc agctcaactg ctcgagaaaa acagtgatat tgtctcgata caagtttcct 1441 ggaacactga cgatacccat cattgttggg gaaatagttc attttatttt tcaagaatgt 1501 atttgtactg aaaggtggga tatggaattc atgagccaag tattagatca gttattgctg 1561 caatacatgt tggcaatatt cgggataggg aaggagttga aagacgttag ggacgaagtt 1621 gttaaacatt ttgattattt ggagacatgg tttaagacat actacaaaca accactcagc 1681 aagaaaaatt taattgacga gacatctgaa aaagaacaga tcatgtttgc tgtggaagaa 1741 gctttggata ttgaagaaga aatcggatca ccaatatttg gcatcaaagg gaaaattgat 1801 gcaactataa cagcgaaatt tgaaaacaaa aagttgaaag gtcaatatat gataccgatg 1861 gaaatcaaaa ccggtaagga gtatatttac catcatgcac aagcgtcatt gtactcattg 1921 ttgtttaagg atagatatga taagaacata gattcatatt tgcttgtgta tacaaaggaa 1981 aaggttacga aaaagtgcaa tatcagaatt tccgagttgc gttcattggt gaatttgaga 2041 aacagagtat ctaattatat aaaagacaat ttgaagctac ctcctttggt aaagaattcc 2101 aactgtgata gatgcgaaat tagaagtgct tgtatgacct taaaccactt gacagaaaat 2161 ggcaccaaag aagaatctgg tattgaggaa gagttgtacg aagctataac tagagatatt 2221 tttgaaaacg attcataccg taagtacttc caacactggg atgaacttat ttctaaagaa 2281 gaagacgtta tgggtagagc agtcaaagag ttatggacaa tcccagcaga ggaccaagag 2341 tttcaaggca aatgcttttc tggtatgacg atcacaaatt cgaatgagac ggaatcgaac 2401 aatttcttat tctcatcaac acatcatgac aaatcccagg atcagcaatt cgtgtacacg 2461 tttgccaagg cagaaaaccc ttcccggttc aatttagcaa aatcacaggt tactatcaac 2521 gataaagtta ttataagtga cgaagaaggc cattttgctt taacaacagg atacgtcaag 2581 cagataacta aagattttgt agtggtttcc actagacgga aaatcatcac atctgattac 2641 aaattgaaaa actataataa ggcaaacaac caagtattcc aaagtgtcat ccgatctact 2701 caacagaata taagaactac gaccaagaaa agattccgta ttgataagga taggatgttt 2761 tatggtttgg ggttagctag atataacgtc ctaagtttat tcttacctaa tggagcttca 2821 cagttgagga aattagtggt tgatcttgaa aagcctactt ttaccgcatc ttcttgggag 2881 attcctgatg cggaaacgtt caaccctgat caaattgcgg cgttgaaaaa agtatttagt 2941 gctgatgatt attctttgat agtggggatg cccggtacag gtaaaaccac tgtgattgct 3001 caactcataa aagtgcttgt ggcacagagg aaatcggtat tgcttacttc ctacacaaat 3061 tctgccgttg ataatatatt acttaaactc aaagacttgg atattgaatt tttaagaatt 3121 ggctaccccc aaagagttca taaagacatt aaagactaca ttcctgaatt caaagactca 3181 atcactacat atgaacaata tgtcaatacc tatatgcgcc caaaggttgt tgcaaccact 3241 tgcttaagca tcacagacgt ttgtttcaat ttgagatatt cttttgatta ttgcatcgtc 3301 gatgaagctt cgcaaatcac cttaccagtg agtttgggtc ctttaaggtt tgctaaaaaa 3361 tttgtcatgg tgggtgatca cgatcagttg caacctttag ttacccatcc cgacaaaaga 3421 gttaaacaag aattatctcg atcacttttc agtttgttgg ctaaagagca tccagattct 3481 gtgagtcact tgacatatca atacagaatg aatagtgata ttatgaatgt ttgcaatact 3541 ttgatttaca acaataaatt aaaatgcggg tcagaacaag ttgcccaaaa ctctttaaag 3601 ataccccacc cagaagtttt aaatagcttt attggtgaag atgtttcgcc ggacctgcaa 3661 tggatccaca aaatatttga tgagaaaaac aacgtgctat ttttggacta tgatgcggta 3721 cctgctgttg aagaaaatgt gggtgaaatg gtaattaata ctaaggaagc gcttttaatt 3781 caacaaatcg tcaacgcatt ggttcacggc ggagttaaag aagacgagat tggggttatg 3841 tcgttttacc gtgctcagtt atcagtattg aaaaagaatc ttaacaactt gaaggatttg 3901 gaaatactca cagctgatca ataccaagga agagacaaag aatgtattat catatcttta 3961 gttcggtcaa atgaacggaa gtttgctggt gatttaatga aggagtatcg tagattaaac 4021 gttgctacaa cgagagctaa aactaagcta ataatccttg ggtcaagatt cacattatcc 4081 accaacgagc taacaaagac gtttattgac tatttggaaa acgaaaagtg gtattatcct 4141 cttccaaaat cggcacacaa gatttacaag attccagaag tgaatgggcc atcaccaact 4201 agatcacaaa aaagccaaga ttcgccaata ttgaatagaa accctatact taagaatgtg 4261 gttcaagaca ttactagata a