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LOCUS XM_707216 2421 bp mRNA linear PLN 18-APR-2022 (CAALFM_C600310WA), partial mRNA. ACCESSION XM_707216 VERSION XM_707216.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2421) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2421) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2421) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2421) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2421) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2421) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_707216.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2421 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2421 /locus_tag="CAALFM_C600310WA" /db_xref="GeneID:3646071" CDS 1..2421 /locus_tag="CAALFM_C600310WA" /note="Ortholog(s) have ubiquitin-protein transferase activity and role in ER-associated ubiquitin-dependent protein catabolic process, retrograde protein transport, ER to cytosol" /codon_start=1 /transl_table=12 /product="ubiquitin ligase complex subunit" /protein_id="XP_712309.2" /db_xref="CGD:CAL0000187118" /db_xref="GeneID:3646071" /translation="MIVHYIILSLWSLLVLASTNNDEHYTQAVIGLEQLARNFTRPNV YNIDNIEGNLYIPQFDQLTNDYKSKQEKPQPPLELTRRIIPLLKKSASESRNVNALVT LGDLYLFGNYSLTPDYYMAKEYYQEAVSLAPNGHAYFMLGYIYSTGLFGTFPVDQERG VLYYQFAVENGDRNAQMVMAYKNFKGLGVPKNCELALEYYTDLVEQGKDWMSKNDADG QVDYNIRISDFNGGLYGEKMSETTSTIEIRSKYFKDLRNSFEEYKLTANEHEYATLFY NALESYKGDYFVPKNLTKAFLTFQECVDLGEEIYGASDYKNIDGIDKMFLSSCQSKLG RMYLKGMGVSNNTKKAKQILDRSLKVQGTPEALNLLGFIEDQGLLGEPNVTKAVDYYV AAIKKKSSEANRNLAKLLMRMNGGDPHTSEHHKEIYTYMKDAVYHRDTEALYYMGSFL QSGLSKIADSKNDISCPNIVMYYRVFLERLSSFYAPHLKFAFEELIAGNYQNALIGYS IAAEHGFEEAQISAAYLLYQLQPLYSKQPPKTFVPERVEMAVDYLERASKQSNVDATI LLGDLYSGQAGASHITPDFDRAFNYYRTAAERESSHGAYKLAEMYEYGIGPANNSVDY FMAKRYYDFSLKYNEMLNHAKSESPSQFVSGKTHIDWALLRLRLKYLFNRSASKQSGN SDGGWLSAFKKVGNRVPNEVPQDSNSISRANAHHEGGTYNDDLIEEYDIGDYLVIAMT FIFFFVFFVQNILRQFRRMRNGQRRDEANNNNNNGDDNDDNQGQNGWNGNQFHFKRGN FEFHFFAI" misc_feature <256..621 /locus_tag="CAALFM_C600310WA" /note="TPR repeat [General function prediction only]; Region: TPR; COG0790" /db_xref="CDD:440553" misc_feature 349..441 /locus_tag="CAALFM_C600310WA" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature 466..555 /locus_tag="CAALFM_C600310WA" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature 871..1017 /locus_tag="CAALFM_C600310WA" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature <988..1680 /locus_tag="CAALFM_C600310WA" /note="TPR repeat [General function prediction only]; Region: TPR; COG0790" /db_xref="CDD:440553" misc_feature 1147..1236 /locus_tag="CAALFM_C600310WA" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature 1255..1476 /locus_tag="CAALFM_C600310WA" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature <1495..1893 /locus_tag="CAALFM_C600310WA" /note="TPR repeat [General function prediction only]; Region: TPR; COG0790" /db_xref="CDD:440553" misc_feature 1495..1584 /locus_tag="CAALFM_C600310WA" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature 1633..1722 /locus_tag="CAALFM_C600310WA" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature 1750..1839 /locus_tag="CAALFM_C600310WA" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" ORIGIN 1 atgatagtgc attacataat attactgttg tggtcactac tagtattagc cagtaccaac 61 aatgacgagc actacaccca agccgttatt ggattggaac agcttgcaag aaatttcaca 121 agacccaatg tatacaatat tgacaatatc gaggggaact tgtacatacc ccagtttgat 181 caattgacaa atgactataa atcaaaacag gagaagccac agccaccact agaattaact 241 cgacgcatta tcccactttt gaaaaagtca gcatcagaat cccgtaatgt caatgcacta 301 gtaactttgg gagacctata cttgtttgga aattactcat tgactccaga ctattacatg 361 gcaaaagagt attatcagga agcagtaagt ttggctccca atggtcatgc atatttcatg 421 ttaggttaca tatattccac gggtttgttt ggaacgtttc cagtggacca agaacgagga 481 gttttatact atcaatttgc agtggaaaat ggtgacagga atgcccaaat ggtcatggcc 541 tacaaaaact ttaaaggttt gggagtgccg aaaaattgtg agttggcatt ggagtattat 601 acggatttgg tagaacaagg taaagattgg atgtcaaaga atgatgccga tggccaggtg 661 gactacaata tcagaatatc tgatttcaat ggtgggttgt atggagagaa aatgagtgaa 721 accacttcta ccattgaaat tagatcaaaa tatttcaaag accttcgaaa cagctttgaa 781 gaatacaagt tgactgccaa tgagcatgaa tatgccactt tgttctataa tgcattggaa 841 agctataaag gcgattattt tgtacccaaa aacttgacca aggctttcct tactttccaa 901 gaatgcgttg atttgggaga agaaatctat ggtgcttctg attataagaa tatcgatggc 961 atagacaaaa tgtttttgag ttcatgtcaa tccaaattag gaagaatgta tttgaaaggt 1021 atgggtgttt ctaataacac caagaaagcc aagcaaattt tggatcggtc attaaaagta 1081 caaggtaccc ccgaagcgtt gaatcttttg ggtttcattg aagaccaagg gttattgggt 1141 gaacctaatg tcacaaaggc agttgactac tatgtagctg ctattaagaa aaaatcttct 1201 gaagccaata gaaacttggc caagttgtta atgagaatga atggaggtga tccacatacg 1261 agtgagcatc acaaggaaat ctacacatac atgaaggatg cggtgtacca ccgagacaca 1321 gaggctttat attatatggg gagcttttta caatctggtt tatccaaaat tgccgactca 1381 aaaaatgata tttcctgccc taacatagtc atgtactacc gtgttttcct tgaaaggtta 1441 tcttcctttt acgcgccaca tttgaagttt gcttttgaag agttgatcgc tgggaactac 1501 caaaatgctc ttattggata tctgatagcg gccgagcatg ggtttgaaga agcccaaata 1561 tcagctgcat acttgttata tcaattacaa ccactttatt ccaaacaacc accaaaaact 1621 tttgttcctg aaagagttga aatggcagta gattatcttg aaagagcgtc aaaacagtca 1681 aatgtagacg ctactatttt acttggtgat ttatattcag gtcaagcagg agcttctcat 1741 attacaccag actttgatcg ggcattcaat tattaccgaa cagcggcgga aagagaatca 1801 tctcatggtg cctataaact tgccgaaatg tatgagtatg gaataggacc agcaaataac 1861 tcggtggact actttatggc gaaacgttat tatgacttta gtctaaaata caatgaaatg 1921 ctcaatcatg cgaaactgga atcaccatct caattcgtat ctggcaaaac acacatcgac 1981 tgggctctat tgagattgcg cttgaaatat ttatttaata gactggcttc caaacagtca 2041 ggaaactccg atggcgggtg gttaagtgca tttaaaaaag tgggtaacag agtacccaac 2101 gaagtccctc aagactccaa tagcatttca agagcgaatg cacatcatga gggtggcacg 2161 tataatgatg atttgattga agagtacgat attggggatt acttggtaat tgctatgacg 2221 tttatatttt tctttgtgtt ttttgtacaa aacatcttga gacagtttag aagaatgaga 2281 aacggtcaac ggagagatga agcaaataac aacaacaata acggtgacga taatgatgac 2341 aatcaagggc aaaatggctg gaatggtaat caattccatt tcaaaagagg taattttgaa 2401 tttcatttct ttgctatata g