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LOCUS XM_707212 2562 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_707212 VERSION XM_707212.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2562) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2562) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2562) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2562) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2562) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2562) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_707212.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2562 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2562 /gene="CPH2" /locus_tag="CAALFM_C600280WA" /db_xref="GeneID:3646067" CDS 1..2562 /gene="CPH2" /locus_tag="CAALFM_C600280WA" /note="Myc-bHLH transcription factor; promotes hyphal growth; directly regulates Tec1 to induce hypha-specific genes; probably homodimeric, phosphorylated; required for colonization of the mouse GI tract; rat catheter and Spider biofilm induced" /codon_start=1 /transl_table=12 /product="Cph2p" /protein_id="XP_712305.1" /db_xref="CGD:CAL0000181382" /db_xref="GeneID:3646067" /translation="MLSQYDEQLAAGDNNGFNKQGNATLYSFDFVDADDFLDSISGAL PNNGHNNVNPNTNDISFEDMNIMNPNIYSPVSAASGDDFTQSSGQPMISEGSNYTGQN FTDYLSDNSLEGYDKNTSRPLHEVDIGFSNKRSNSTSTGSLSHNEEITPISHYSVDSI VTSPEPPINKQGDFPPIKRTTTVSSTNSITNTTKKPAKVTKPKSKDKNSHNMIEKKYR TNINTKILALRDAVPALRIAAGCDDVSIADLEGLTPASKLNKASVLTKATEYIKHLES KNFILKQQNIELHRLIQHANMNPKSLPPPPQQMQAPPQPGFGFYPPQNQSFNVTPASQ YPSPQQQVSPTQQQTVHHPPQPNRYLLGGMAAVMGTSLFGGSGENDFRSLSALPFSYL FPNAILNPSPLTIQLWTLTKVLLVVGSLASIFIPMYKQAQLKKEDKPNTIPETSLLDW ILISIGFKTPAKLSVSKRDAIISNLQGGNDWSQLVSDYFYLAGCEINFENCFLSLVLG TIIRHRFPVVATILNHYLSMKEALLLNLDYKGFSKSLIRLNQLISKVDGVSIFESTNL TTRLTNVFTNNRINANIVDGQNHVKYIEFYQRNINDYYAIVFNWRLLEFIHELNVTYL EQLNDDQSQVLTDLKIIEAFFGEQDNKLFGYYQLFTSILNANYAPYLFESLKDKVESS LEKFRIAYEGIDLTDHEIHNTSSEDEYEQESPVVYKYEPTLKSQKSLISSLNLVNEEE FIILTCSLTIYYYKNKEYDRALKLLNYLRLDNDSKTLSLLTFTSLITLINELIPGKIE DNVNLDSAIRICRDWLENPDLTQYMDEDIKLELKKIVVTKGMIVNGIDVNESDEE" misc_feature 619..876 /gene="CPH2" /locus_tag="CAALFM_C600280WA" /note="basic Helix Loop Helix (bHLH) domain superfamily; Region: bHLH_SF; cl00081" /db_xref="CDD:469605" misc_feature order(640..645,649..651,664..666,775..780) /gene="CPH2" /locus_tag="CAALFM_C600280WA" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:381405" misc_feature order(658..663,670..675,679..684,694..696,778..783, 790..795,802..804,808..813,820..825) /gene="CPH2" /locus_tag="CAALFM_C600280WA" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:381405" ORIGIN 1 atgttatcgc agtatgatga acaacttgct gcgggcgaca ataatgggtt caacaaacaa 61 ggtaatgcaa ctttatattc gtttgatttt gttgatgccg acgatttctt agattcgata 121 tctggcgcat tgccgaataa tggtcataac aatgtcaatc ccaacaccaa cgacatttca 181 tttgaagata tgaatattat gaatccaaat atctattccc ccgtatctgc agccagtggt 241 gatgacttta cacaatcttc tggtcaaccg atgattagtg aaggtagtaa ttacacagga 301 caaaacttta cagattactt atcggacaac tcattggaag ggtatgataa gaatacaagt 361 cgtccattac atgaagtcga tattggtttt tctaacaaac gttccaattc aacttctaca 421 ggaagtttaa gccacaatga agagattaca ccgatttcac actactccgt tgactccata 481 gtgacttctc cagagcctcc aataaacaaa caaggtgact tcccaccaat caaaagaacc 541 acaaccgtga gttctaccaa tagtattacc aacaccacta aaaaaccggc caaagtcaca 601 aagccaaaat caaaagataa gaactctcac aacatgattg aaaagaaata cagaaccaac 661 atcaacacaa aaatcttggc tttgagagat gctgtgcctg ctcttagaat tgctgctggt 721 tgtgacgatg tttccatagc tgatttggaa gggttaacac cagcatctaa attgaacaaa 781 gctagtgttt taaccaaagc tacagaatat atcaaacatt tggaaagtaa aaacttcatt 841 ttgaaacaac aaaatattga gttgcatagg ctaattcaac acgccaacat gaatccaaag 901 tcattacctc cacctcctca acaaatgcaa gcaccaccac aaccagggtt tggcttttat 961 ccaccacaaa accaatcatt caatgtcacc cctgcttctc aatatccatc tccccaacaa 1021 caagtgtctc caacccaaca acaaacagtg catcacccac cacaacctaa tcgatatttg 1081 ttgggaggta tggctgctgt tatgggtact tcattatttg gtggatctgg tgaaaatgat 1141 ttccgcagtt tgagtgcctt gccattttcg tatttgtttc ctaatgctat tcttaaccca 1201 tcgccattga ctattcaatt atggactttg acaaaagtgt tattggtggt tggaagcttg 1261 gctagtattt ttataccaat gtataagcaa gcacaactca aaaaagaaga caaacccaac 1321 actattccag aaacttcatt attggattgg atcttgatat caataggatt caaaactccc 1381 gccaagttgt cagtttccaa gagagatgcc ataatatcta acttacaagg tggaaatgat 1441 tggtcgcaat tggtttctga ttatttctat ttggctggtt gtgagataaa ttttgaaaac 1501 tgttttttgt cgttggtatt gggtacaata atcagacaca gatttcctgt ggttgcaact 1561 attttgaatc actatttgct gatgaaggag gcgttgcttt tgaatcttga ctacaaggga 1621 tttagcaaat cgttgataag attgaatcaa ttgattagca aagtggatgg tgtctcgata 1681 tttgaaagca ctaatttgac taccaggttg accaatgtat ttaccaataa tcggattaat 1741 gccaatatag ttgacggaca aaatcatgtg aaatacattg aattttacca acgtaacatt 1801 aacgattatt atgccattgt ttttaactgg agattattgg aatttattca tgaattgaat 1861 gtgacgtatt tagaacagtt gaatgacgac cagtcgcaag tgttaactga tttgaaaatt 1921 attgaagctt tctttggcga acaagacaac aagttgttcg gctattatca attattcacc 1981 agtattttga atgctaacta tgctccatat ttatttgaaa gtttgaaaga caaagtcgaa 2041 tcgtcgttgg agaaattcag aattgcttac gaaggaattg atttgactga tcacgagatc 2101 cacaacactt cgtcggaaga tgaatatgaa caagaatccc ctgttgtgta taaatatgaa 2161 ccaacattaa agtcacagaa atccttaatc tcatcattga acttggtgaa tgaagaagaa 2221 tttataatac taacatgctc attgactatt tactactaca agaataaaga atacgatcgt 2281 gcattgaaat tattaaacta tttgagattg gataatgatt ctaaaactct cagccttttg 2341 acatttactt ccttgataac attaatcaat gaattgatac caggtaaaat cgaagataat 2401 gttaatttgg attcggctat tagaatttgc cgcgattggc ttgagaaccc tgatttaact 2461 caatatatgg atgaggatat caaacttgaa ttgaagaaaa ttgtggttac taaaggaatg 2521 attgttaatg gaattgatgt taatgagagt gatgaagagt aa