Candida albicans SC5314 uncharacterized protein (CAALFM_C604290WA),

LOCUS       XM_707006               1869 bp    mRNA    linear   PLN 18-APR-2022
            partial mRNA.
ACCESSION   XM_707006
VERSION     XM_707006.2
DBLINK      BioProject: PRJNA14005
            BioSample: SAMN02953594
KEYWORDS    RefSeq.
SOURCE      Candida albicans SC5314
  ORGANISM  Candida albicans SC5314
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade;
            Candida.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G.
  TITLE     Assembly of a phased diploid Candida albicans genome facilitates
            allele-specific measurements and provides a simple model for repeat
            and indel structure
  JOURNAL   Genome Biol. 14 (9), R97 (2013)
   PUBMED   24025428
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D.,
            Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B.,
            Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T.
  TITLE     Assembly of the Candida albicans genome into sixteen supercontigs
            aligned on the eight chromosomes
  JOURNAL   Genome Biol. 8 (4), R52 (2007)
   PUBMED   17419877
REFERENCE   3  (bases 1 to 1869)
  AUTHORS   Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S.,
            Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T.,
            Davis,R.W. and Scherer,S.
  TITLE     The diploid genome sequence of Candida albicans
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004)
   PUBMED   15123810
REFERENCE   4  (bases 1 to 1869)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   5  (bases 1 to 1869)
  AUTHORS   Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-OCT-2016) Department of Genetics, Candida Genome
            Database, Stanford University, Mail Stop-5120, Stanford, CA 94305,
            USA
REFERENCE   6  (bases 1 to 1869)
  CONSRTM   Candida Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2016) Department of Genetics, Candida Genome
            Database, Stanford University, Mail Stop-5120, Stanford, CA 94305,
            USA
  REMARK    Sequence and annotation update by submitter
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_032094).
            
            On Dec 8, 2016 this sequence version replaced XM_707006.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: CGD
            Annotation Status   :: Full annotation
            Annotation Version  :: A22-s07-m01-r01
            URL                 :: http://www.candidagenome.org/
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Candida albicans SC5314"
                     /mol_type="mRNA"
                     /strain="SC5314"
                     /host="Homo sapiens"
                     /culture_collection="ATCC:MYA-2876"
                     /db_xref="taxon:237561"
                     /chromosome="6"
                     /haplotype="A"
                     /geo_loc_name="USA: New York"
                     /collected_by="Margarita Silva-Hutner"
     gene            <1..>1869
                     /locus_tag="CAALFM_C604290WA"
                     /db_xref="GeneID:3646280"
     CDS             1..1869
                     /locus_tag="CAALFM_C604290WA"
                     /note="Ortholog(s) have mRNA binding activity and role in
                     protein deubiquitination, regulation of ER to Golgi
                     vesicle-mediated transport, regulation of retrograde
                     vesicle-mediated transport, Golgi to ER, ribophagy"
                     /codon_start=1
                     /transl_table=12
                     /product="uncharacterized protein"
                     /protein_id="XP_712099.2"
                     /db_xref="CGD:CAL0000181939"
                     /db_xref="GeneID:3646280"
                     /translation="MTTATTKTTTTTTNANVNANQPQPADKSSATPSTTPSATGTPKP
                     SATQVQLSQDRASNIGWFFIKSYYDFFISKLDEIHKIYHPHASINHDAFPGTKNDKSD
                     SGASNDNVKDVLPIAYKAKGTDAIKETFSKHLSLRKNNRIVITSACFEVSLEKNIIIV
                     VFGEWSSNDEPYKQFTQTFVLVPGKTDNTYDVANDILKFVSINGYKEKHEQKREQEVK
                     ASSQTAVNGNGSSTTTNNNNNNNNSNTSVTKKPTVTTTGSEPVTKVTTESTPKTSGLK
                     PESSKKDVATNGEVKKEDFEKTQPIKSDVKVENQEEKQEKISNTDKELTKDDSVNKQS
                     NESSVTTTTSTTQNSKPVVTKNEESKEEKAPSTKEETKQPTVKKPQPEPTKPNAAAAA
                     PPQQQQQPLTWAALAQQAVPIKQTTKSSGSSSAVAKPVSAGSSSGATPTVKKSVTSFS
                     SINNSTTSPGQHGSNGGGGGKFRKEDWYPIYIRGIRSLDEKELKDHLSKKFGELKFFK
                     VNQNIALVDFVHQEAQRKALDAKETTLDGVTFALEPRESKTGNNFHNNSGNNNNSNNG
                     GYRKFSGSGSGSGGGGGQSKEGSGSGGSAKNKDKFDNKKINGSGNKKNLNKAPSFK"
     misc_feature    172..603
                     /locus_tag="CAALFM_C604290WA"
                     /note="Nuclear transport factor 2 (NTF2) domain plays an
                     important role in the trafficking of macromolecules, ions
                     and small molecules between the cytoplasm and nucleus.
                     This bi-directional transport of macromolecules across the
                     nuclear envelope requires many...; Region: NTF2; cd00780"
                     /db_xref="CDD:238403"
     misc_feature    order(247..249,265..267,361..363,439..441,448..453,
                     478..480,544..546,580..588,592..594,598..600)
                     /locus_tag="CAALFM_C604290WA"
                     /note="TAP/p15 interaction [active]"
                     /db_xref="CDD:238403"
     misc_feature    order(259..261,265..267,277..279,430..435,439..441,
                     448..453,472..474,484..492,502..504,508..519,526..528,
                     544..546,580..588,592..603)
                     /locus_tag="CAALFM_C604290WA"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238403"
     misc_feature    order(277..282,400..402,415..417,487..489,493..495,
                     499..504,508..510,517..519,589..591,595..597,601..603)
                     /locus_tag="CAALFM_C604290WA"
                     /note="RanGDP-NTF2 interaction [active]"
                     /db_xref="CDD:238403"
     misc_feature    1438..1620
                     /locus_tag="CAALFM_C604290WA"
                     /note="RNA recognition motif (RRM) superfamily; Region:
                     RRM_SF; cd00590"
                     /db_xref="CDD:409669"
ORIGIN      
        1 atgactactg ctactactaa gactacaact acaactacta atgctaatgt taatgctaat
       61 cagccacaac cagctgataa atcaagtgcc acaccaagca caacaccaag tgcaacagga
      121 acccccaaac cttctgccac tcaagttcaa ttatcccaag atcgtgcatc caatattggg
      181 tggttcttta ttaaatctta ttatgatttc ttcatttcca aattagatga aatccataag
      241 atctaccatc cacatgcctc gatcaatcat gatgcattcc ctggaaccaa aaatgataaa
      301 tctgactctg gtgcctcaaa tgataatgtc aaagatgtcc tccctattgc ttataaggca
      361 aaaggtaccg atgccattaa ggaaactttt tctaaacatt tatcattgag gaaaaacaat
      421 cgaattgtca ttactagtgc atgttttgaa gtttctttag aaaaaaatat tattattgtt
      481 gtctttggag aatggagttc taatgatgaa ccttataaac aattcactca aacatttgtc
      541 ttggtgccag gtaaaactga caatacttat gatgttgcta atgatatttt gaaatttgtt
      601 agtattaatg gttataagga aaagcacgag caaaaaaggg aacaagaagt taaagcctct
      661 tctcaaactg ccgttaatgg caatggcagc agcaccacca cgaacaacaa caacaacaac
      721 aacaacagta atacctctgt tactaagaaa ccaactgtta caacaactgg atctgagcct
      781 gtcactaaag ttacaactga atctactcca aaaactagtg gattgaaacc tgaatcatca
      841 aagaaagatg ttgccactaa tggagaagtt aagaaagaag attttgaaaa aactcaacca
      901 attaaatcag atgttaaagt tgaaaaccaa gaggaaaaac aagagaaaat atcaaacact
      961 gacaaagaat tgacaaaaga cgattcagtt aataagcaac tgaatgaatc cagtgttact
     1021 actactactt ctaccactca aaattcaaaa ccagttgtta ctaaaaatga agaatccaaa
     1081 gaagaaaaag ctccatctac caaagaagaa acaaaacaac ctacagttaa aaaacctcaa
     1141 ccagaaccta cgaagcctaa tgcagcagca gcagcaccac cacaacaaca acaacaacca
     1201 ttgacatggg cagcattagc tcaacaagct gttcctatta aacaaactac caaatcatct
     1261 ggatcttcat cggctgttgc taaaccagta tctgctggta gtagtagtgg agccacccca
     1321 actgtcaaaa agctggttac ctcctttagt tcaatcaaca attctactac atcacctggt
     1381 caacatggat ctaatggtgg tggtggtggt aaatttagaa aagaagattg gtatccaata
     1441 tatattagag gtatacgtct gttggatgaa aaagaattaa aagatcattt gagtaaaaaa
     1501 tttggtgaat tgaaattttt taaagtcaat caaaatattg cattagttga ttttgttcat
     1561 caagaagctc aacgtaaagc attagatgca aaggaaacaa ctttggatgg tgtcacattt
     1621 gcattagaac caagagaatc taaaaccggt aataatttcc ataataattc cggtaacaat
     1681 aacaatagta acaatggtgg ttatagaaag tttagtggca gtggcagtgg cagtggtggt
     1741 ggtggtggcc aatctaaaga aggtagtggc agtggtggta gtgccaaaaa taaagacaaa
     1801 tttgataata aaaagattaa tgggagtggt aataagaaga atctcaataa agccccttct
     1861 ttcaaataa