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LOCUS XM_706233 1953 bp mRNA linear PLN 18-APR-2022 partial mRNA. ACCESSION XM_706233 VERSION XM_706233.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1953) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1953) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1953) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1953) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1953) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1953) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_706233.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1953 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1953 /gene="FAT1" /locus_tag="CAALFM_C600740WA" /db_xref="GeneID:3647083" CDS 1..1953 /gene="FAT1" /locus_tag="CAALFM_C600740WA" /note="Predicted enzyme of sphingolipid biosynthesis; upregulated in biofilm" /codon_start=1 /transl_table=12 /product="long-chain fatty acid transporter" /protein_id="XP_711325.1" /db_xref="CGD:CAL0000176828" /db_xref="GeneID:3647083" /translation="MSGLELAVAAVLGSQLLEAKYLISDDLSLASTVARNALPYLWKS SRGRASYWYSFEDSALRYSNNKALAFPRPKKNPPKPQVDENGYSIYDDQFDLEEFTYK ELYDMVLRYSYILKNEYGVTSNDTIGVACMNKPLFIILWLALWNIGALPAFLNFNTKD KPLVHCLKIANVSQVFVDPDCDKPIRDTESQIAEELPNTKIHYIDELALFDRLRLKST PKHRAKDSTRRPQDTDSSACALIYTSGTTGLPKAGIMSWRKAFMASVIFGHIMKIKEN SSVLTAMPLYHSTAAMLGVCPTLIVGGCVTVSQKFSATSFWTQARLCGATHIQYVGEV CRYLLNSKPHPDQDRHNVRIAYGNGLRRDIWSEFKSRFHIDGIGEFYAATESPIATTN LQYGEYGVGACRKYGSIINLFLSTQQKLAKMDPEDESEIWRDPKTGLCTEAAYNEPGE LMMRILNPQDIEKSFQGYYGNKSATNSKILTNVFSKGDAWYRSGDLLKMDEDKLLYFV DRLGDTFRWKSENVSATEVENELMGSKTLKQSVVVGVKVPNHEGRACFAVCEPKDELQ HEEILKAIHEHVTKSLPSYAQPAFLKIGAIEASHNHKVPKNQFKNQKLPKGEDGKEMI YWLNGDKYTELTEDDWSSICAGKAKL" misc_feature 280..1848 /gene="FAT1" /locus_tag="CAALFM_C600740WA" /note="This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate...; Region: Adenylate forming domain, Class I superfamily; cl17068" /db_xref="CDD:473059" misc_feature order(718..720,727..744,748..753) /gene="FAT1" /locus_tag="CAALFM_C600740WA" /note="acyl-activating enzyme (AAE) consensus motif; other site" /db_xref="CDD:341228" misc_feature order(727..729,1072..1077,1135..1152,1483..1485, 1519..1521,1528..1530,1561..1563,1807..1809) /gene="FAT1" /locus_tag="CAALFM_C600740WA" /note="AMP binding site [chemical binding]; other site" /db_xref="CDD:341228" misc_feature order(727..729,847..852,1018..1020,1024..1029,1036..1038, 1072..1077,1135..1152,1483..1485,1519..1521,1528..1530, 1552..1563,1753..1755) /gene="FAT1" /locus_tag="CAALFM_C600740WA" /note="active site" /db_xref="CDD:341228" misc_feature order(847..849,1024..1029,1036..1038,1072..1074, 1552..1560,1726..1728,1753..1755) /gene="FAT1" /locus_tag="CAALFM_C600740WA" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:341228" ORIGIN 1 atgtcaggtt tggaattagc agttgctgcc gtacttggta gtcaattatt agaagccaaa 61 tatttgattt cagatgacct tctgttggca ctgacagttg caagaaatgc acttccatat 121 ttatggaaat cttcgagagg tagagcatct tattggtact catttgagga ttctgctttg 181 agatacagca acaacaaggc attagcattc ccaagaccta agaagaatcc accaaagcct 241 caggttgatg aaaatggata cagcatttat gatgatcaat ttgatcttga agaatttact 301 tataaagagt tgtatgatat ggtattgaga tactcttata tcttgaagaa tgagtatggt 361 gtcacatcca acgataccat tggtgttgct tgtatgaaca aaccactttt cattatatta 421 tggttggcat tatggaatat tggtgcatta ccggcatttt tgaatttcaa taccaaggat 481 aaacctttgg ttcattgtct taagattgcc aatgttagtc aagtttttgt tgatccagat 541 tgtgacaaac caattagaga cactgaatcc caaattgccg aagaattacc aaacacaaaa 601 atacactaca ttgatgaact tgccttgttt gatcgtttga gacttaaatc tactccaaag 661 cacagagcta aagatagcac tagaagacct caagataccg attcttctgc ttgtgctttg 721 atttacacat ctggtaccac tggtttacct aaagcaggga taatgtcttg gagaaaggca 781 tttatggctt cagttatctt tggccacatt atgaaaatca aggaaaactc gagtgtgtta 841 acagcaatgc cattatacca ttctacggca gcaatgttgg gggtatgtcc aactttaatt 901 gtaggcgggt gtgttactgt ttcccaaaaa ttctcggcaa catcgttctg gactcaagca 961 agattatgtg gagccactca tattcaatac gttggtgaag tttgtcgtta tttattgaat 1021 tcaaagcctc acccagatca agatagacat aatgttagaa ttgcttatgg taatgggttg 1081 cgtcgtgaca tttggtctga attcaaatct agattccaca ttgatggaat tggtgaattc 1141 tacgctgcca ctgaatcacc aattgctacc actaacttgc aatatggtga atacggtgtt 1201 ggtgcctgtc gtaaatacgg ttccatcatc aatttatttt tatctacaca acaaaaatta 1261 gctaagatgg atcctgaaga tgaaagtgaa atttggagag atccaaagac agggttgtgt 1321 actgaagctg cttacaatga acctggtgaa ttgatgatga gaattttaaa cccacaagat 1381 atcgaaaaat cattccaagg ttactatggt aacaaatcag ccactaacag taaaatcctc 1441 accaacgtgt tcagcaaagg tgatgcttgg tacagaagtg gagatttgtt gaaaatggat 1501 gaagacaaat tattatattt tgttgataga ttaggtgata cattccgttg gaaatcagaa 1561 aatgtgtcag ccaccgaagt tgaaaatgaa ttgatgggat caaaaaccct taaacaatcg 1621 gttgttgttg gtgtcaaagt tccaaaccat gaaggtagag cctgttttgc tgtttgtgaa 1681 ccaaaagacg agttacaaca tgaagaaatc ttgaaagcaa tacatgaaca cgtaaccaag 1741 tctttaccaa gttatgctca acctgcattc cttaaaatag gtgctattga agcatctcat 1801 aatcacaagg tgccaaagaa tcaattcaaa aatcaaaaat taccaaaagg tgaagatggt 1861 aaagaaatga tttactggtt gaatggtgat aaatatactg agttaactga agatgactgg 1921 tctctgattt gtgctggtaa agctaaattg taa