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LOCUS XM_705744 4980 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_705744 VERSION XM_705744.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 4980) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 4980) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 4980) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 4980) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 4980) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 4980) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_705744.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..4980 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>4980 /gene="CHC1" /locus_tag="CAALFM_C602120WA" /db_xref="GeneID:3647552" CDS 1..>4980 /gene="CHC1" /locus_tag="CAALFM_C602120WA" /note="Clathrin heavy chain; subunit of the major coat protein; role in intracellular protein transport and endocytosis; flow model and rat catheter biofilm repressed" /codon_start=1 /transl_table=12 /product="clathrin heavy chain" /protein_id="XP_710836.2" /db_xref="CGD:CAL0000192308" /db_xref="GeneID:3647552" /translation="MSNDIPIDFTELTQLTELGIPQTSLDFKSTTLESDHYICVRESG AQGNTVAIVNLKNNNEVTRKNMTADNAIMHPKEFVISLRANGTTLQIFNLGSKQRLKA FTMDQPVIFWKWLDDTYLGLVTQSSIYYWNVFDGTNNGPTKLTDRHHTLNNCQIINFV AEPDLNWFAVTGIAQEDGRIAGHIQLYSKSRNVSQAIEGHVCKFASISLSGGVQPTKV FCVGNKNAQGQGNMHIIEIDHVDGNPQFQKKVVDIFFPPDASNDFPISLQASNKYGIV YVLTKYGFIHLYDMETGANLFVNRITADPVFTASSYNDGTGLITINKAGQVLSVEVSR DKIIPYVLDKLSNVPLALALSSRGGFPGAENLFQQQFQTYLNQGDYSNAAKVAASSEQ LRTQDTINKLKNITPQPGQISPILQYFSTLLDRGTLNKFESIELAKPVLQQDRKPLFE KWLKEDKLTSSEELGDIVKSYNDTTLALAVYIRANVNIKVVSCLAELGQFDKILPYCQ KVGYNPDYTNLIQNLVRVNPDKASEFATSLLSSPDANLNVEQIADLFFSQNYIQQGTA FLLDALKNDTPAEGHLQTKVLEINLLHAPQVADAILGNQMFSHYDKPTIGKLCEKSGL FQRALEHYDDLKDIKRVIVHTNVLPSDWLVSYFGQLNVDQSVACIKELLSNNMQQNLQ VVIQVATKYSDLIGAAKLIKIFEEYKCTEGLYYYLSSIVNLTQDPDVVFKYIQAAARM NQTKEIERVVRDNNVYNGEKVKNFLKEFKLDDQLPLIIVCDRFNFVHDLILYLYKNQY FKFIEVYVQSVNPANTPQVVAGVLDVDCDENIIKGLLMSVLGRVPIKELVEEVEKRNR LKILLPFLEKTLEGGSNDQEVYNTLAKIYIDSNNSPEKFLQENNNYDTLVVGKYCEKR DPYLAYISYSKGGNDDQLISITNENKMYKYQARYLLSKSDIELWNKVLSSDNIHRRQL VDQVISTGIPELDDPEPISITVKAFMENDLPEELMELLEKIILEPSPFSENASLQGLM ILTAIKADSSKVSSYIEKLDKFDPNEIAPLCIDNGLNEEAFEVYDKFELRSEAMKVLV EDIVSLDRAEQYAEKYDTPELWYQLGTAQLDGLRIPEAIDSYVKSKNPENFAQVIEIA EHAGKEEELITFLDMARETLREPVVDGALINAYATLDRLSDMEKFVGGSNVADLEAIG DKLFEAKNYKGAKILYSNVSKYSKLATTLVYLGDYQGAVDCARKASNTQVWKQVNSAC IENKEFRLAQICGLNLIIDAEELPELVKTYEYNGYFNELIALFENGLSLERAHMGMFT ELAILYAKYSPEKVMEHLKLFWSRINIPKVLTACEDAHLYPELIFLYCHYEEWDNAAL TMIEKSEVAFDHSSFKEIIVKAPNLEIHYKAIQFYMNENPSLLVDLLKVLTPKLDLPR VVRMFVQSDNLPMIKPFLISVLDKNNSVVNSAYHDLLIEEEDYKSLRSSIENESNNRF NKLDLAERLEKHDLIFFRQIAATLYTKEKKFNRAISILKTDKLWPDLLRTVAISKSKK IAHELLDYFVETGNHECFVALLYTSYEFIANDYVMELSWLHNLSNFIKPYEISIAFEN QKKLNEVYQDLQKRKEADRKQEEEPGVGQPLMLTNGPMSYQGTGATGIGL" misc_feature 1003..1071 /gene="CHC1" /locus_tag="CAALFM_C602120WA" /note="Clathrin, heavy-chain linker; Region: Clathrin-link; pfam09268" /db_xref="CDD:462732" misc_feature 1075..1266 /gene="CHC1" /locus_tag="CAALFM_C602120WA" /note="Clathrin-H-link; Region: Clathrin_H_link; pfam13838" /db_xref="CDD:463995" misc_feature 1636..2031 /gene="CHC1" /locus_tag="CAALFM_C602120WA" /note="Clathrin heavy chain repeat homology; Region: CLH; smart00299" /db_xref="CDD:128594" misc_feature 2062..2478 /gene="CHC1" /locus_tag="CAALFM_C602120WA" /note="Clathrin heavy chain repeat homology; Region: CLH; smart00299" /db_xref="CDD:128594" misc_feature 2503..2916 /gene="CHC1" /locus_tag="CAALFM_C602120WA" /note="Region in Clathrin and VPS; Region: Clathrin; pfam00637" /db_xref="CDD:459884" misc_feature 2941..3369 /gene="CHC1" /locus_tag="CAALFM_C602120WA" /note="Region in Clathrin and VPS; Region: Clathrin; pfam00637" /db_xref="CDD:459884" misc_feature 3388..3807 /gene="CHC1" /locus_tag="CAALFM_C602120WA" /note="Region in Clathrin and VPS; Region: Clathrin; pfam00637" /db_xref="CDD:459884" misc_feature 3826..4254 /gene="CHC1" /locus_tag="CAALFM_C602120WA" /note="Clathrin heavy chain repeat homology; Region: CLH; smart00299" /db_xref="CDD:128594" misc_feature 4273..4704 /gene="CHC1" /locus_tag="CAALFM_C602120WA" /note="Region in Clathrin and VPS; Region: Clathrin; pfam00637" /db_xref="CDD:459884" ORIGIN 1 atgtcgaacg atattcctat tgactttact gaattaaccc agttgaccga attgggaatt 61 ccacagactt cgttggattt caaatcaaca actttggaat cagatcacta catatgtgtc 121 cgtgaatctg gagctcaagg aaacaccgtt gcaattgtca atttgaaaaa caacaatgaa 181 gtgactagaa aaaatatgac cgccgataat gccattatgc atcctaagga atttgttatt 241 tcattgagag ccaatggaac cactttacaa attttcaact tgggatcaaa acaaagattg 301 aaggctttca ctatggatca accagtgata ttttggaaat ggctcgacga tacatattta 361 gggttggtaa cacaatcatc aatctactat tggaatgtat ttgatggaac caacaatgga 421 ccaaccaaat tgaccgatag acaccacaca ttgaacaatt gtcaaatcat aaactttgtc 481 gctgaacctg atttgaattg gtttgctgtc accggtattg ctcaagaaga tggtcgtatc 541 gctggtcaca tccaattata ctcaaaatca agaaatgttt cgcaagctat cgaaggtcat 601 gtatgtaaat ttgcttctat atctttatct ggaggtgtcc aaccaactaa agttttctgt 661 gttggtaaca agaatgccca aggtcaaggc aacatgcata ttattgagat tgatcatgtt 721 gatggcaatc cccaatttca aaagaaagtg gttgacattt tctttccacc tgatgcttcc 781 aatgatttcc caatcagttt acaagcttct aacaagtacg gtattgttta tgtattgacc 841 aaatacgggt tcattcactt gtatgatatg gaaactgggg ccaacttgtt tgtcaacaga 901 ataactgccg atccagtatt cactgcttct agttataacg atggcactgg tttaataact 961 atcaacaagg ctggtcaagt tttaagtgtt gaagtttccc gtgacaagat cattccttat 1021 gttttggata aattatcaaa tgtcccattg gctttagctt tatcctctcg tggtggattc 1081 ccaggggctg aaaacttgtt ccaacaacaa ttccaaactt acttgaacca aggtgattac 1141 agtaatgccg ctaaagttgc cgcttcatct gagcaattgc gtactcaaga taccatcaac 1201 aaattgaaga atattactcc tcaaccaggc caaatatcac caattttgca atatttctcc 1261 actttgttag acagaggtac tttgaacaaa tttgaatcga ttgaattggc aaaaccagtt 1321 ttacaacaag atcgtaaacc attatttgaa aaatggttga aagaagacaa attgacatct 1381 tcagaagaat taggggatat cgtcaagtct tacaatgata caactttggc acttgctgtt 1441 tatattagag ccaatgtaaa tatcaaagtg gtttcttgtt tagctgaatt aggccaattt 1501 gataaaattt tgccatactg tcaaaaagtt ggttacaatc ctgattacac caatttgatt 1561 caaaacttgg ttagagtcaa ccctgataag gccagtgaat ttgctacttc cttattgtca 1621 agtccagatg ccaacttaaa cgttgaacaa attgctgact tgttcttttc acaaaattac 1681 attcaacaag gtactgcatt cttattggat gctttgaaaa acgacactcc agctgaaggt 1741 cacttgcaaa ccaaagtttt ggaaatcaac ttgttacatg cacctcaagt tgctgatgcc 1801 attttaggta atcaaatgtt tagtcattat gataaaccaa ccattggtaa attatgtgag 1861 aaatcaggat tattccaaag agctttggaa cattatgatg atttgaaaga tattaagaga 1921 gtcattgttc acactaatgt tttaccaagt gattggttgg tttcgtattt tggtcaattg 1981 aatgtcgatc aatctgtcgc ttgtatcaaa gaattgttga gtaacaatat gcaacaaaac 2041 ttgcaagtgg ttattcaagt agccacaaaa tactcagatt tgattggtgc tgccaaatta 2101 atcaaaattt ttgaagagta caagtgtact gaaggattgt actattattt aagttctatt 2161 gtcaatttga ctcaagaccc agatgttgtt ttcaaataca ttcaagctgc agctagaatg 2221 aaccaaacca aagaaatcga aagagtggtt agagataaca atgtttataa cggtgaaaaa 2281 gtgaagaact ttttgaaaga atttaaattg gatgatcaat tacctttaat cattgtttgt 2341 gatagattca actttgttca cgatttgatt ttgtatttgt acaagaatca atactttaag 2401 tttattgaag tttatgttca atcagttaat ccagccaata ctccacaagt tgttgccggt 2461 gtattggatg ttgattgtga tgaaaacatc attaaaggct tgttaatgtc tgttttgggt 2521 agagttccaa tcaaagaatt ggttgaagaa gtcgaaaaga gaaacagatt gaaaatcttg 2581 ttaccattct tggaaaaaac attagaaggc ggatctaatg atcaagaagt atacaacact 2641 ttagctaaaa tctacattga ttccaacaat tcaccagaaa agtttttgca agaaaacaac 2701 aactacgata cattggttgt tggtaaatac tgtgaaaaga gagatccata tttggcttat 2761 atttcttatt ctaaaggtgg caacgatgac caattgattt ctattaccaa cgaaaataaa 2821 atgtacaaat accaagccag atatttgtta tctaagtctg acattgagtt atggaacaaa 2881 gttttaagct ctgacaatat ccacagaaga caattggttg atcaagtcat ttccactggt 2941 attccagaat tggatgaccc agaaccaatc tcaattactg ttaaggcatt tatggaaaat 3001 gatttaccag aagagttgat ggaattatta gaaaagatca ttttggaacc atctccattc 3061 agtgaaaatg catcattaca aggattgatg attttgactg ctatcaaagc tgattcatcg 3121 aaagtgtcta gttatattga aaaattagac aaatttgacc ctaacgaaat tgctccatta 3181 tgtattgata atggattgaa tgaagaagca tttgaagttt acgacaaatt tgaattaaga 3241 tcagaagcta tgaaagtttt agttgaagat attgtttcat tagacagagc tgaacaatac 3301 gctgagaaat atgacacccc tgaattgtgg taccaattgg gtactgcaca attggatggt 3361 ttacgtatcc cagaagcaat tgactcttat gttaaatcta agaacccaga aaatttcgct 3421 caagtgattg aaattgctga acatgctgga aaggaagaag aattaattac tttcttggat 3481 atggccagag aaacattaag agaaccagtt gttgatggtg ctcttattaa tgcttatgcc 3541 actttagata gattgagtga tatggaaaaa tttgttggtg gctccaatgt tgctgatttg 3601 gaagctattg gtgacaaatt atttgaagca aagaattata aaggtgctaa aattttgtat 3661 tctaacgttt ccaaatattc caaattagct actactttgg tttacttggg tgattaccaa 3721 ggtgctgttg actgtgctag aaaagcttct aacactcaag tttggaaaca agttaacagt 3781 gcttgtattg aaaacaaaga gttcagattg gctcaaattt gtggtttgaa tttgattatc 3841 gatgctgaag aattgcctga attggtcaag acttacgaat acaatggtta tttcaacgaa 3901 ttgattgctc ttttcgagaa tgggttgagt ttggaaagag ctcacatggg tatgttcacc 3961 gaattggcta tcttgtatgc taaatactct ccagaaaaag ttatggagca tttgaaatta 4021 ttctggtcta gaattaatat tccaaaagtt ttgactgcat gtgaagatgc acacttgtac 4081 ccagaattga tctttttgta ctgtcattac gaggaatggg ataatgctgc attgaccatg 4141 attgaaaaat cagaagttgc atttgaccac tcttctttca aggaaatcat tgttaaggca 4201 ccaaacttgg aaattcatta caaggctatt caattctaca tgaatgaaaa cccttcgttg 4261 ttggttgatt tattgaaagt gttaacacca aaattagatt tgccaagagt tgttagaatg 4321 tttgttcaaa gtgacaactt gccaatgatt aaaccatttt tgatttctgt tttggataag 4381 aacaattctg ttgttaattc tgcttaccat gatttattaa ttgaagaaga agattataaa 4441 tctttgagat catctattga aaatgaaagc aacaatagat tcaataaatt ggatttggct 4501 gaaagattgg aaaagcatga tttgattttc tttagacaaa ttgctgctac tttatacact 4561 aaagaaaaga aattcaatag agccatttcc attttgaaaa ctgacaaatt atggccagat 4621 ttattaagaa cggttgctat ttccaaatct aaaaagattg ctcatgaatt attagattac 4681 tttgttgaaa caggtaatca tgaatgtttt gttgccttgt tgtatacttc ctatgaattc 4741 attgctaatg attacgtgat ggaattatca tggttgcaca acttgtccaa ctttattaaa 4801 ccatatgaga tttccattgc ttttgaaaat cagaagaaat tgaatgaagt ataccaagat 4861 ttacaaaaga gaaaagaagc agatagaaaa caagaagaag aaccaggtgt tggccaacca 4921 ttgatgctta ctaatggacc aatgagttat caaggtactg gtgccactgg aattggktta