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LOCUS XM_705398 1983 bp mRNA linear PLN 18-APR-2022 (CAALFM_C600170CA), partial mRNA. ACCESSION XM_705398 VERSION XM_705398.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1983) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1983) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1983) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1983) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1983) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1983) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_705398.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1983 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1983 /locus_tag="CAALFM_C600170CA" /db_xref="GeneID:3647903" CDS 1..1983 /locus_tag="CAALFM_C600170CA" /note="Ortholog(s) have mRNA binding, ubiquitin-specific protease activity and role in protein deubiquitination, regulation of ER to Golgi vesicle-mediated transport, regulation of response to osmotic stress, ribophagy" /codon_start=1 /transl_table=12 /product="mRNA-binding ubiquitin-specific protease" /protein_id="XP_710490.2" /db_xref="CGD:CAL0000199093" /db_xref="GeneID:3647903" /translation="MTSSSSNSGSSRFRGDAASFSPSQYPNYHQQQFHPQQYMAQQIP AQQQFYYQFPQTYPMMMNQMYPVFPYPPDPFFQQQQQQQQQQQQQQQFVMQPQYIYHP PPKPPKTNKPPKVNGSAPPPKIELVDLPLYINTSKTEFLQRYSITQESRSIDELQRAN TLEEYNENTNRLIISTNVMKIIDENDHKTTITNGQPEEPKPAAKAVAPPVPISNWASF LQSTAPPTPKKIAKPKPPPTPPTPVQAVTPVPQFDMSNESAQPLGTLLLKIMFDSNYS VFSSLPTFDIKPRGLTNTGNICYMNSILQILIHCEPFNRLLKLIETKSIGSLGPSSTP LLDATIIFFNQFQENVKGAISPESFYASLTKLDKFSHLKWGQQEDAEEFLGYYLDGLN EEFLGAIKQLNTPQIDSLIQVYAQDHDAEATAKFKFNVKSTIKRIKNDAEADDGEWNQ VNKKKNSTTTKIEIDPTPLNMIFGGEFKSVVTIPKQSSSFQKSITLDPFQHVQLDVSS ADTIEDAIKHLNESESISYTNNNKEIQVKKQTFIEKLPNVLIIHLKRFSYLKDQEIGV EKLRKKVDYNHDLIIPKEVMARDTGMPIKYQLVSVVYHHGSSADAGHYTSDIYNAGQW WRIDDTAVKQIQNEEVLNAGTEENIKNAYILLYRRI" misc_feature 865..1971 /locus_tag="CAALFM_C600170CA" /note="Ubiquitin carboxyl-terminal hydrolase; Region: UCH; pfam00443" /db_xref="CDD:425685" misc_feature order(877..879,892..894,1837..1839,1885..1887) /locus_tag="CAALFM_C600170CA" /note="active site" /db_xref="CDD:239072" ORIGIN 1 atgacatctt catcatcaaa ctcagggtca ctgcgctttc gtggagacgc agctagcttt 61 tcacctagcc aatacccaaa ctaccaccag caacagtttc acccacaaca atatatggca 121 cagcagattc ctgcacaaca acagttttac tatcagtttc ctcagacata tcccatgatg 181 atgaatcaga tgtatccggt gtttccctat ccgccagatc ccttttttca acaacaacaa 241 caacaacaac agcaacaaca acagcaacaa caatttgtaa tgcagccgca gtatatctat 301 catccaccgc caaaacctcc caaaactaat aaaccaccaa aagtgaatgg cagtgcacca 361 ccaccaaaaa tcgaattagt ggatctcccc ttgtacatta atacttcgaa aaccgaattt 421 cttcaaagat acagcataac ccaagagtca cgttctatag acgagcttca acgagccaat 481 acattagagg aatacaacga aaacactaat agattaatta tcagcactaa tgtcatgaaa 541 ataatagatg aaaatgatca caaaactacc attacaaatg gacaacccga agaacccaaa 601 cccgctgcca aagctgtagc accacctgtg cctattagta attgggccag tttccttcaa 661 tcaactgcac caccaacccc aaaaaagata gctaaaccca aaccaccacc aactcctcca 721 accccagtcc aggcagtaac accagttccg caatttgata tgagcaacga atctgcacag 781 cctttgggga cattattgct caaaatcatg tttgatagca actactctgt tttcagcagc 841 ttgccaacat ttgatataaa acctagagga ttgactaaca ccggcaacat ttgttatatg 901 aattctatat tacagatttt gatccactgt gagccattca atagattgct aaaacttata 961 gagaccaagt ccataggaag tttgggccca tcttcgacgc cattactaga tgccaccata 1021 atttttttca atcagtttca agagaatgtt aagggcgcta ttctgcccga aagtttctat 1081 gccagcttga ccaagcttga caagttttca catttgaaat ggggacaaca ggaggatgcc 1141 gaagagtttt tggggtacta ccttgatgga cttaatgaag agtttttagg ggctatcaaa 1201 caattgaaca cgccccaaat cgattccttg atacaggtat atgcacaaga ccacgatgct 1261 gaagccactg ccaagttcaa gtttaatgtc aaatctacta tcaagagaat caagaacgat 1321 gctgaggccg acgacggcga atggaaccag gtgaataaga aaaagaatag cacaaccacc 1381 aaaatagaaa tcgacccgac cccgctaaat atgatttttg gcggtgagtt caagtccgtg 1441 gttactatac ccaaacaatc gtcgtcgttc cagaaatcca taacgctaga ccctttccaa 1501 cacgtgcagt tggatgtatc gtcagcagac actattgaag atgcaatcaa gcatttgaat 1561 gagtcggaaa gcataagtta tacaaacaac aataaagaga tccaagtgaa gaagcagacg 1621 tttattgaaa agttgcctaa tgtattgata atacatctaa aacgattcag ttacttgaaa 1681 gaccaggaga ttggggtgga gaagttgagg aagaaagtgg attataacca cgatttaata 1741 ataccgaaag aggtaatggc aagggatacg gggatgccga tcaaatacca gttggtgtcg 1801 gttgtttacc accacggaag tagtgcagat gctggacatt ataccagtga catatacaat 1861 gcaggccaat ggtggagaat agatgatact gctgtgaagc agatacagaa tgaagaggtt 1921 ttgaatgctg gcacagagga gaatataaag aatgcgtata tattattgta taggagaatc 1981 taa