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LOCUS XM_705132 2538 bp mRNA linear PLN 18-APR-2022 (guanosine2922-2'-O)-methyltransferase (SPB1), partial mRNA. ACCESSION XM_705132 VERSION XM_705132.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2538) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2538) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2538) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2538) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2538) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2538) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_705132.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2538 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2538 /gene="SPB1" /locus_tag="CAALFM_C604160CA" /db_xref="GeneID:3648179" CDS 1..2538 /gene="SPB1" /locus_tag="CAALFM_C604160CA" /note="Putative AdoMet-dependent methyltransferase; Hap43-induced; repressed by prostaglandins; possibly essential gene, disruptants not obtained by UAU1 method; Spider biofilm induced" /codon_start=1 /transl_table=12 /product="27S pre-rRNA (guanosine2922-2'-O)-methyltransferase" /protein_id="XP_710224.1" /db_xref="CGD:CAL0000201177" /db_xref="GeneID:3648179" /translation="MGKQQKKHSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFL EKSKVVIDLCAAPGSWCQVASQLCPINSLIIGVDIVPIKPLPNVITFQSDITTEDCRS RLRGHMKTWKADTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLTAGGTFVTKI FRSRDYNNLMWVFQQLFEKVEATKPPASRNVSAEIFVVCKGFKAPKKLDPRLLDPKEV FEELGGGNESKQNNEAKIFNPEKFSSQRQRQGYQEGDYTLFHTMPIMDFIKQDDPINQ LGSLNKFDLPAPKDDDNDDDDHDHEWKILSKLKLCTPELLECIKDLKVLGRKEFKMIL KFRKQARDILGIDKDEKEEEEENPKIEVEPLTEEQKIDQELQDLINKQKQKAKRLKKN ANELKQKEIIRNQMNMLTDMNIGIEAAQIGADSLFNLKTAEKTGQLDKLAKGKKKMIF NDEELAKDNEIHIDEEEINDNDKDSADELDELENQLDDMYHQYQARKAERDANYRAKQ ARGDADDEAWNGIEEDNDDVESGKDYEMESESDDDDDEHIRLIAEKKSNGSLSRTARN FFASDSIFNELSDDVILEEIENKTKGSNGKMVESIQEQVANDNNENDDGDNDEEESDF EIVPNQKSDDDDDDESMNSDDDEVSTTTKSTTHQQKVDLATVEAMTLAHQVALGQKNK YDLIDEGINRYSFRDKDNLPDWFIDDEKKHSKLIKPITKEAAIAIKEKQKQLNARPIK KVLEAQSRKKLRALKRLEKIKKKSDLINEDSGKSERDKADEISKLMKKLNKKQKQKPK TTVVVARGSNRGLSGRPKGVKGKYKMVDGVMKNEQRALKRIAKKYKK" misc_feature 1..612 /gene="SPB1" /locus_tag="CAALFM_C604160CA" /note="23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ [Translation, ribosomal structure and biogenesis]; Region: RlmE; COG0293" /db_xref="CDD:440062" misc_feature 736..1209 /gene="SPB1" /locus_tag="CAALFM_C604160CA" /note="Domain of unknown function (DUF3381); Region: DUF3381; pfam11861" /db_xref="CDD:463375" misc_feature 1870..2523 /gene="SPB1" /locus_tag="CAALFM_C604160CA" /note="Spb1 C-terminal domain; Region: Spb1_C; pfam07780" /db_xref="CDD:462264" ORIGIN 1 atgggtaaac aacaaaagaa gcatagtaaa ggtcgtttag atagatatta ttatcttgcc 61 aaagaaaaag ggtatagagc acgttcatca tttaaaatca ttcaaattaa tgaaaaatat 121 ggccattttt tagaaaaatc caaagttgtc attgatttat gtgctgcacc aggttcatgg 181 tgtcaagtag catcacaatt atgtccgatt aattcattaa ttattggagt tgatattgtt 241 cctattaaac cattacctaa tgtaatcaca tttcaatctg atattactac tgaagattgt 301 cgaagtcgat tacgaggtca tatgaaaact tggaaagccg atactgtatt acatgatggt 361 gcacctaatg ttggtcttgg ttgggttcaa gatgctttta cacaatctca attaacttta 421 caagcattga aattggcggt tgagaattta actgctggtg ggacatttgt caccaaaatt 481 ttccgatcaa gagattataa taatttaatg tgggtattcc aacaattatt tgaaaaagtt 541 gaagctacta aaccaccagc atcacgtaat gtatcagcag aaatttttgt tgtttgtaaa 601 ggatttaaag ctcctaaaaa attagatcct cgattattag atccaaaaga agttttcgaa 661 gaattgggtg gtggtaacga aagtaaacaa aataatgaag ctaaaatttt taatcctgag 721 aaatttagta gtcaaagaca aagacaaggt tatcaagaag gtgattatac attatttcat 781 accatgccta taatggattt tattaaacaa gatgatccta taaatcaatt aggatcttta 841 aataaatttg acttaccagc accaaaagat gacgataatg atgacgatga ccatgaccac 901 gaatggaaaa tcttgagtaa acttaaatta tgtacaccag aattattaga atgtatcaaa 961 gatttaaaag ttttgggaag aaaagaattt aaaatgattc ttaaatttag aaaacaagcc 1021 agagatattc ttggtataga taaagatgaa aaagaagaag aagaagaaaa tccaaaaatt 1081 gaggttgaac cattgactga agaacaaaaa attgatcaag aattacaaga tttaatcaat 1141 aaacaaaaac aaaaggctaa acgattgaaa aaaaatgcta atgaattaaa acaaaaagaa 1201 attattagaa atcaaatgaa tatgttaact gatatgaata ttggtataga agcagcccaa 1261 attggtgcag attcattatt taatttgaaa acggcggaaa aaaccggtca attggataaa 1321 ttagctaaag gtaaaaagaa aatgattttt aatgatgaag aacttgccaa agataatgaa 1381 attcatatcg acgaagaaga gataaatgat aacgataaag attctgctga tgaattggat 1441 gaattggaaa atcaattgga tgatatgtat catcaatatc aagctagaaa agctgaaaga 1501 gatgccaatt atcgtgccaa acaagctcgt ggtgatgccg acgatgaagc atggaatggt 1561 attgaagaag ataatgatga tgttgagtct ggaaaagatt atgaaatgga atctgaatct 1621 gatgatgatg atgatgaaca tataagactt atagctgaga aaaagtcaaa tggatcattg 1681 tctagaactg ctcgtaattt ttttgcatcc gattcgattt ttaatgaatt aagtgatgat 1741 gttattttag aagaaattga aaataaaacc aaaggcagta atgggaaaat ggtcgaatca 1801 atacaagaac aagttgccaa cgacaacaac gaaaatgatg acggtgacaa cgatgaagaa 1861 gaaagtgatt ttgaaattgt acctaatcaa aaatcagacg atgatgatga tgatgaatca 1921 atgaattctg atgatgatga agtgtcgact actactaaat ccactacaca tcaacaaaaa 1981 gtcgatcttg ctacagttga agccatgaca ttagctcatc aagttgcatt aggacaaaaa 2041 aacaaatatg atttaattga tgaaggaatc aatagatatt cattcagaga taaagataat 2101 ttacctgatt ggtttattga tgatgaaaaa aaacattcca aattaattaa acccatcact 2161 aaagaagcag caattgccat taaagaaaaa caaaaacaat taaatgctcg accaattaaa 2221 aaagttttag aagctcaaag tcgtaaaaaa ttacgagccc ttaaaagatt agaaaaaatt 2281 aaaaagaaat ctgatttaat taatgaagat tcagggaaat ctgaaagaga taaagctgat 2341 gaaatttcaa aattaatgaa aaaattgaat aaaaaacaaa aacaaaaacc taaaactacc 2401 gtggtggtgg ctcgtggatc taatagagga cttagtggta gacctaaagg agttaaaggt 2461 aaatataaaa tggttgatgg tgttatgaag aatgaacaac gtgcattaaa gagaatagcc 2521 aaaaagtaca agaagtag