Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_070219251 7241 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_070219251 VERSION XM_070219251.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7241 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7241 /gene="Ubr1" /note="Ubr1 ubiquitin ligase; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108062312" CDS 419..6127 /gene="Ubr1" /codon_start=1 /product="E3 ubiquitin-protein ligase UBR1 isoform X1" /protein_id="XP_070075352.1" /db_xref="GeneID:108062312" /translation="MDRYDMEDVVVAPPAECSSPLKEWRLKRQAGTLARSDFIEFFKR ESPKYFDYQTGGTETDTNALTRCRGVNYMMGGRHRVSQSDNLRIGVLFQLTHHHANLV PEIKRLQQSKQGPIRGSLKCMFKEALAKEEIIDVLVEFMLGDNPASALEKLRLEGNTA TVCGKVFKNGEPTYSCRECGVDPTCVLCVNCFKRSAHRFHKYKMSTSGGGGCCDCGDD EAWKKDHYCQLHLANRKNPLESKILTDAVLERAEICFGAILAFCVNYLEIEPNASLQC LDGNVEGGQVDGAQYCTVLYNDESHTFDQVIQTLTKIAKCKHKDAMEIVAAIDREGRA VVKCDTFKECNDLKTAIENQMIPATALLTNPRNNQSLRTSVLHIGAVACQQFALQLLG WFQEFLVRHYLFRKTFAELVQRKQEAFCIRHILEYDVKLWKTARTCWHRLLISGMLME YDNKMVLAQEFSRRYATIVEDFISDDHDHAFSIVSLSVQLFTVPSIAHHLIAHEGIFD KLLHTFYHVAIEKFIQNKTLHFSKNIASLTFFKRANYILYDLRYLLSLKPELLNNDLR SGFLEGCRALMRVLNVMQGMESITRQTGQHMDYEPEWECAFNLHIKLATTISQVIEWA AGDVKLLRKLYKMTVRALVSNSFIVGGEKTETRSVAGHVANCLMYDVSVKPVSIHLPL SRFYAGIYLHLGAHEMTYDSLQTETEALSIKLTPREIIEPVLCTHAMIAQVAAGMWRR NGYSLLHQLYFYRNVRCRVEMLDRDIVCLQIGASLMESNEFLIHVLNKFNLIAWAQAT YETMLAESPVDDEFMRQLSMIDEFLELLIVIIGERWMPGVSMVTEEDRLRKEIIQLLC TKSYSHSELSRALPDGNSGNSDNIFEDVINTVAVFKKPVGVESKGVYELKEHLFEEFN VYFYHYTKEDKSKAEELQRERRKAKKQLVCCPPPMLPQLTPAFTSMANILQCNVFLSI CTLVMERALDARSRSFTESHLQKILHLLGFAIQEELSEHYPFLSFYERSQHYGILEKL DDLARCPRLEAHRDFVVWTIKRYKELQAKQAPSDSQPSGSQQCSGGGGASEEQPLSSE EQARQEKEIRARLAAERRAKIMAQMQSAQKSFMKSNAEMFAASEKETSGSTGAMEWED IPAEGEEAAQDDGQEQEQGAVALRPTVVACLGPERKIYQGSEANFKCILCFENCAISR SGPPLVSSAFVQTSRVIFTTPNMRAGPSALHMSCCGHVMHHSCWQEYYSNEESKEQRR PHRNRVALSQAHNVEFHCPYCRTLSNTVLPVTEALPAFSPAPSASDSYLPLDSFVEIM RTLAADLGAMRDEEMCQFPSVAGILRKSGVVGDMAQFERSVQLIRDPPKLHANYSDVM AFLSKALLNARQSQQSHLKEQQGTSTGTATLDPDSIELVPLLWDTCSYTLQALEIYLF EVQKPLKAELPMRHQSCAINLVRACSRFAASRCNFELELGEIPLSPSLRLQAEYSARL LNEIFNQKGSSVLEWDCFRKLVPLQFGVLNLMTAESANQTVIPSGSMFDFYILQTMFL AQLTKAVLCFDVDREQAKRPGHAELTQLAYVEQLPARIRDNMVAFYRRYNIAARVLQA SKQKQLAEEQQKEGDQQQQQTTVVIPCEPHHLALLLEYVQRQMSSFLRCACLFYRCLT DIDFPDTFPTDQPDRFELMCQYLGLEPQLGVYFDMETVYATMMHSFASHPHIGREIEQ RGQPEEVRRCLQLEPCLRPLPRLKPLYDDYSDLINSVSDIFCPNNEREEMKTPTMCLI CGSILCGQSYCCQPELGKMSVGACTHHAHACGAEVGIFLRIRDCQVVYLGRGKGCFVQ PPYLDEYGETDQGLRRGNPLRLCQAAYSRIFLQWLGHGLHEEIARLNDNTNVAVTQWH HM" misc_feature 902..1108 /gene="Ubr1" /note="UBR-box found in ubiquitin-protein ligases, E3-alpha-1 (UBR1), E3-alpha-2 (UBR2), and similar proteins; Region: UBR-box_UBR1_like; cd19672" /db_xref="CDD:439070" misc_feature order(905..907,944..946,953..955,980..982,989..991, 1007..1009,1016..1018,1055..1057,1061..1063,1097..1099, 1106..1108) /gene="Ubr1" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:439070" misc_feature 1286..1477 /gene="Ubr1" /note="ATP-dependent Clp protease adaptor protein ClpS; Region: ClpS; pfam02617" /db_xref="CDD:460621" misc_feature 4118..4294 /gene="Ubr1" /note="RING finger, H2 subclass, found in ubiquitin-protein ligase E3-alpha-1 (UBR1), E3-alpha-2 (UBR2), and similar proteins; Region: RING-H2_UBR1-like; cd16482" /db_xref="CDD:438145" misc_feature 4646..6052 /gene="Ubr1" /note="Proteolysis_6 C-terminal; Region: PRT6_C; pfam18995" /db_xref="CDD:465944" polyA_site 7241 /gene="Ubr1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttcagttcca ccatcgcaac gccgttcaca tgcgcgcgca tggcttcgga gtgcttcttc 61 ttcctattgt tcattacgaa attgtaaagt taaatagcag acaaatttgc gttctgccag 121 tataaatagc tagatataaa caaagaaatt ttgtaaatta ctagtgaatt ccccaagagc 181 catacggaag agcgaaaatt tttcatagca acatttaggc aaataagtaa cacaacaaat 241 gcaacaacaa caacaagcac aacagcaaga ccagcaacag caacaacaac aagtaccaga 301 accacaggaa taacaaggac aaggacacaa caaaacaaga cacccacgcg cggaggccag 361 aaagagacgg cagcacagga gccacagcga gtgcgagaga gcgagagcga gagcaacgat 421 ggatcgctac gacatggagg acgttgtggt ggcgccacct gcagagtgca gttcgccgct 481 caaggagtgg cgcctcaagc gccaggcggg cacactagcc cggtccgatt ttatcgaatt 541 ctttaagcgc gagtcgccca agtactttga ttaccagacg ggcggtacgg agacagatac 601 caatgcgctt actcgctgtc gcggggtgaa ctatatgatg ggcgggcgcc atcgggtttc 661 gcaatcggat aacctgcgca tcggcgtgct cttccagttg acccatcatc acgcgaacct 721 ggtgccggag atcaagcggc tgcagcagag caagcaaggt ccgatccgtg gctccctcaa 781 gtgcatgttc aaggaggcgc tggccaagga ggagatcatc gatgtcctgg tcgagttcat 841 gctgggcgac aatcccgcct ccgcactgga gaagctccgg ctggagggca acacggccac 901 cgtttgcggc aaggtcttca agaacggtga gcccacctac agttgccgcg agtgcggcgt 961 cgatcccacc tgcgtgctct gcgtcaattg cttcaagcgc tcggcgcatc gcttccacaa 1021 gtacaagatg tccacctccg gcggcggcgg ttgctgcgac tgcggcgacg acgaggcctg 1081 gaagaaggat cactactgtc agctgcatct ggcaaatcgc aagaatccgc tggagagcaa 1141 gatcctaacc gacgccgtgc tcgagcgcgc cgagatctgc tttggtgcga tcctggcctt 1201 ctgcgtcaac tacctggaga tcgagccgaa cgccagtctg cagtgcctcg acgggaatgt 1261 cgaaggcggc caggtggatg gggcgcagta ctgcacggtg ctctacaacg acgagtcgca 1321 cacgttcgat caggtcatcc agacgctgac caagatcgcc aagtgcaagc acaaggacgc 1381 catggagatt gtggcggcga tcgatcgcga gggacgggcg gtggtcaagt gcgatacctt 1441 taaggagtgc aacgacctga aaacagccat cgagaatcaa atgatcccgg cgaccgcgct 1501 gctgacgaat ccgcgcaaca accagtcgct aaggacatcg gtgctgcaca ttggggccgt 1561 ggcctgccag cagtttgccc tgcagctgct cggctggttc caggagttcc tggtgcgcca 1621 ctacctcttc cgcaagacct tcgccgagct ggtgcagcgc aagcaggagg ccttctgcat 1681 ccgccacata ctcgagtacg acgtgaagct gtggaagacg gcgcgcacct gctggcaccg 1741 cctcctcatc tccggcatgc tgatggagta cgacaacaag atggtgctgg cccaggagtt 1801 ctcgcgtcgc tacgccacca ttgtcgagga ctttatcagc gacgatcacg accatgcctt 1861 ctcgattgtc tcgctcagcg ttcagctgtt cacggtgccc agcattgccc atcatctgat 1921 cgcccacgag ggcatcttcg acaagctgct gcacaccttc taccacgtgg ccatcgagaa 1981 gttcatacag aacaagacgc tgcactttag caagaacatc gccagtttga ccttcttcaa 2041 gcgggccaac tacatcctgt acgatctgcg ctatctgctc agtttgaagc cggagctgct 2101 gaacaacgat ctgcgcagcg gattcctaga aggctgccgt gcgctgatgc gcgtgctaaa 2161 cgttatgcag ggcatggagt cgatcacgcg gcagacgggc cagcacatgg actacgagcc 2221 ggagtgggag tgcgccttca atctgcacat caagctggcc accaccattt cgcaggtgat 2281 cgagtgggcg gccggggatg tgaagctgct gcgcaagctg tacaagatga cggtgcgagc 2341 gctggtgagc aacagcttca ttgtgggtgg cgagaagacc gaaacgcgca gtgtcgctgg 2401 ccatgtggcc aactgtttga tgtacgatgt gtcggttaag ccggtatcga ttcatttgcc 2461 gctgtcgcgc ttctatgccg gcatctatct gcatctgggc gcccacgaga tgacctacga 2521 cagcctgcag accgaaacgg aggcgctgag catcaagctg acgcccaggg agattatcga 2581 gccggtgctg tgcacgcatg cgatgatcgc ccaggtggcc gccggaatgt ggcgtcgcaa 2641 tggctactcg ctgctgcacc agctctactt ctatcgcaac gttcgctgcc gcgtcgagat 2701 gctggacagg gatattgttt gcctgcaaat tggcgcctcg ctgatggaga gcaacgagtt 2761 tctgattcat gtgctcaaca aattcaatct gattgcctgg gcgcaggcca cgtacgaaac 2821 gatgctggcc gagagtccgg tggacgatga gttcatgcga cagctgtcga tgattgacga 2881 gttcctcgag ctgctgatcg tcatcatcgg cgagcgttgg atgccgggcg tatcgatggt 2941 gacggaggag gaccggctgc gcaaggagat catccagctg ctgtgcacca aatcctattc 3001 gcattcggag ctgagtcgcg cgctgccgga cggcaatagc gggaatagcg acaacatatt 3061 cgaggacgtc atcaacacgg tggccgtctt caagaagccc gtgggcgtcg agtccaaggg 3121 cgtctacgag ctgaaggagc atctgttcga ggagttcaac gtgtacttct atcactacac 3181 caaggaggac aagtccaagg ccgaggagct gcagcgggag cggcgcaagg ccaagaagca 3241 gctcgtctgc tgcccgccgc cgatgctgcc gcaattgacg ccggccttta catccatggc 3301 gaacatactg cagtgcaacg tgttcctcag catctgcact ttggtcatgg aacgggcctt 3361 ggacgcacgc agtcgctcct tcaccgaatc gcatctccag aagatcctcc acctgctggg 3421 cttcgccatc caggaggagc tgagcgagca ctatcccttc ttgagcttct acgagcgctc 3481 ccagcactac ggaatcctcg agaagctgga cgatctcgcc cgctgtccca ggttggaggc 3541 tcatcgcgac tttgtcgtgt ggaccatcaa gcggtacaag gagctgcagg ccaagcaggc 3601 gcccagcgac tcccagccca gtggctccca gcaatgcagc ggcggcggcg gagcctcgga 3661 ggagcagccg ctcagctccg aggagcaggc gcgccaggag aaggagatac gcgcccgttt 3721 ggcggccgag cggcgggcca agatcatggc tcagatgcag agtgcccaga agtcgttcat 3781 gaagagcaat gccgagatgt ttgcggccag tgagaaggag acaagtggta gtacgggtgc 3841 catggagtgg gaggatatac ccgccgaggg tgaggaggcg gcgcaggatg atggacagga 3901 gcaggaacag ggagcggtgg ccctcaggcc cacggtggtg gcctgtctgg ggccggagcg 3961 caaaatctac cagggcagcg aggcgaactt caagtgcatt ttgtgcttcg agaactgcgc 4021 catcagccgc agcggtccgc cgttggtcag ctccgccttt gtccagacct cgcgggtgat 4081 cttcaccacg ccaaatatgc gcgcagggcc gagcgccctg cacatgagct gctgcggcca 4141 tgtgatgcac cacagctgct ggcaggagta ctacagcaac gaggagtcca aggagcagcg 4201 gcgtccgcac cgcaatcgcg tggccctcag ccaggcgcac aacgtcgagt tccactgtcc 4261 gtattgccgg acgctgagca acaccgtgct cccggtgacc gaggcgctgc ccgccttctc 4321 gccagctccc tcggccagcg atagctatct gccgctggac agcttcgtcg agatcatgcg 4381 cactttggcc gccgatttgg gcgccatgag ggacgaggag atgtgccagt ttcccagcgt 4441 cgccggcatt ttgcgtaaat ccggcgtggt tggcgacatg gcgcagttcg agcggagcgt 4501 tcagctcatc cgggatccgc ccaagctgca cgccaactac agcgatgtga tggccttcct 4561 cagcaaggcg ctgctaaatg cccggcagag ccagcagtcg catctgaagg agcagcaagg 4621 aaccagcact ggaacagcca ccctagatcc cgatagcatc gagctggtgc cgctgctctg 4681 ggacacatgc agctacacgc tgcaggcgct cgagatctat ctgttcgagg tgcagaagcc 4741 gctgaaggcc gaactcccta tgcgccacca gagctgcgcc atcaatctgg tgcgcgcctg 4801 ctcccgcttc gccgcctcgc gctgcaactt tgaactggag ctgggcgaga ttccgttgtc 4861 gccgtcgctg cgcctgcagg cggagtactc cgcccggctg ctgaacgaga tcttcaacca 4921 gaagggcagc agtgtgctcg agtgggactg cttccgcaag ctggtgccgc tgcagtttgg 4981 cgtcctcaat ctgatgaccg ccgagagtgc caaccaaacc gtcataccca gcggcagcat 5041 gttcgacttc tacatcctgc agaccatgtt cctggcccag ctgaccaagg cggtcctctg 5101 cttcgatgtg gaccgggagc aggccaagcg gccaggccat gccgagctca cgcaactggc 5161 ctacgtggag cagctgccgg ccaggatccg tgacaatatg gtggccttct atcgccgcta 5221 caacattgcg gccagagtgc tgcaggcgag caagcagaag cagctggccg aggagcagca 5281 gaaggaagga gatcaacagc agcagcagac gactgttgtc ataccctgcg aaccgcatca 5341 cttggccctg ctgctcgagt acgtgcagcg tcagatgagc tccttcctgc gctgcgcctg 5401 cctcttctac cgctgcctca ccgacatcga cttcccggac acgtttccca ctgaccagcc 5461 ggatcgcttc gagctaatgt gccagtattt gggcctcgag ccccagctgg gcgtgtactt 5521 tgacatggag acggtgtacg ccacgatgat gcactcgttc gcctcgcatc cgcacattgg 5581 acgcgaaata gagcagcgcg gccagccgga ggaggtgcgt cgctgcctcc aactggagcc 5641 ctgcctgcga ccgctgccgc gtttgaagcc gctgtacgac gactacagcg atctgatcaa 5701 cagcgtgtcg gacatcttct gcccgaacaa cgagcgcgag gagatgaaga cgccgacaat 5761 gtgtctgatc tgcggctcga tcctctgcgg ccagtcgtac tgctgccagc cggagctggg 5821 caagatgtcg gtgggcgcgt gcacacatca tgcgcacgcc tgcggcgcgg aggtgggtat 5881 cttcctgcgc atccgcgact gccaggtggt ctatctgggc aggggcaagg gctgcttcgt 5941 ccagccgccg tatctcgatg agtacggcga aacggatcag gggctgaggc gcggcaatcc 6001 gctgagactc tgccaggcgg cctacagcag gatcttcctg cagtggctcg gccatgggct 6061 gcacgaggag atcgcccggc tgaacgacaa caccaatgtg gcggtgacgc agtggcatca 6121 catgtagtcc tgcgcagacg atgatcatga tgacgattac agttacgata aaggagcagg 6181 cggcggcggc ggcggcagtc aatgtgatta ttacatacta acattaggag agcctattta 6241 tacgtctaag cattttacta cttgtccgtt ttggaagaag cgcccactca tccaacatca 6301 aacatccaac accatccaca aaccacgaac acgccaccat caccaccacc aaatcctgtc 6361 cagcagcggc ccccaatcga caattgcaac gattgtccaa ctttcttctt attaattaat 6421 attaattcat taaaatatta ttatgatttt ttttttgaac taaccttaga atacttgttg 6481 atagtttgag cggctcagcg ccctcctcta gttatatata tatatataat atcatatgct 6541 aaatatataa cgactaggtt agacttttgc ccagcacttc aaatgtcgca gcagctgaag 6601 gaagcaaagc tacgttgaaa taaaagcaac aaaatatgca agtcctgctc tctctctatc 6661 ttttgtctcg ctcgcgcggc cccactcgat gtatatatag tcccgatctt tgagtgccga 6721 tgatcctaac catgttgagg tcctattttt ggcgtttgtt gatttgtaca tttagttagt 6781 gtaaaaatat tgataccgct taagagtata cccgaaattt gttgtccccc cttcaagcag 6841 aagtttagat tcgtagtcgc ccgaccaatc cacttatcca tagcccacac aatcgccctc 6901 tcttccagag ccccccgctt ttctacccca tctcaatcca acccaaggaa cgcagttaaa 6961 atagtcatca tgtttacttg atcaatatac ttaacaccct atacgactat atatttacat 7021 attaacaagc gtatatatat atatattata gatacataac acgcatattt ctttttatgt 7081 attgtacaac aaacaacaaa atcgactatg tatgtgaagt tctagcaaaa agcaaaaaat 7141 aaatgttctt gaaaaagtaa atcttcaaaa tgaaacagca aaaaaaaaga aacaacagaa 7201 ataaaatgca aagtttgcaa aattttagtg atattcaaga a