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LOCUS XM_070219087 2609 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_070219087 VERSION XM_070219087.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2609 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2609 /gene="kdn" /note="citrate synthase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108054783" CDS 81..1634 /gene="kdn" /codon_start=1 /product="probable citrate synthase, mitochondrial isoform X1" /protein_id="XP_070075188.1" /db_xref="GeneID:108054783" /translation="MFVLRLVSASSRQYFSMQHRSLAKKSIWDAKPFGFQRLRSKQED DTTGQLKEQQQPSPESLGKVSEAQKLPNVGAYVRMISADGKSLRDVLTAKVPQEQERV KNFRKQHGATKMGETTIDMMYGGMRGIKALVTETSVLDADEGIRFRGLSIPECQKVLP AADGGTEPLPEGLFWLLLTGEVPTKSQVQQLSREWAERAALPQHVVTMLNNMPTTLHP MSQFAAAVTALNHDSKFAKAYSDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYCNTYR GGKGSRSIDSSLDWSANFVKMLGYDNAPFTELMRLYLTIHSDHEGGNVSAHTVHLVGS ALSDPYLSFAAGLNGLAGPLHGLANQEVLVWLRKLQKEAGNNPSEEQLKEYIWKTLKS GQVVPGYGHAVLRKTDPRYTCQREFALKHLPDDETFQLVSKIYKVVPPILTETGKVKN PWPNVDAHSGVLLQYYGMKEMNYYTVLFGVSRALGVLASLVWDRALGLPIERPKSFST DLLVKMVQK" misc_feature 339..1622 /gene="kdn" /note="Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or...; Region: ScCit1-2_like; cd06105" /db_xref="CDD:99858" misc_feature order(453..458,465..485,738..740,750..752,759..761, 1035..1037,1050..1052,1059..1064,1071..1076,1083..1091, 1101..1103,1122..1127,1134..1142,1284..1286,1575..1601) /gene="kdn" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99858" misc_feature order(459..461,1035..1037,1047..1049,1137..1148, 1152..1154,1161..1163,1263..1286,1293..1295,1308..1310, 1431..1433,1440..1442,1446..1448,1512..1514,1524..1526, 1575..1577,1584..1586) /gene="kdn" /note="active site" /db_xref="CDD:99858" misc_feature order(459..461,1137..1145,1152..1154,1161..1163, 1263..1286,1293..1295,1431..1433,1440..1442,1446..1448, 1575..1577) /gene="kdn" /note="coenzyme A binding site [chemical binding]; other site" /db_xref="CDD:99858" misc_feature order(459..461,1035..1037,1047..1049,1140..1145, 1263..1268,1272..1286,1308..1310,1440..1442,1524..1526) /gene="kdn" /note="citrylCoA binding site [chemical binding]; other site" /db_xref="CDD:99858" misc_feature order(1035..1037,1047..1049,1143..1148,1281..1286, 1308..1310,1446..1448,1512..1514,1524..1526,1584..1586) /gene="kdn" /note="oxalacetate/citrate binding site [chemical binding]; other site" /db_xref="CDD:99858" misc_feature order(1143..1145,1281..1283,1446..1448) /gene="kdn" /note="catalytic triad [active]" /db_xref="CDD:99858" polyA_site 2609 /gene="kdn" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aacatcacta ggcttgatat tcctttaaaa gaggaaagca aagtcggaaa attgaaagtt 61 tcttcacttt ttatacaatc atgttcgtgc ttcgccttgt aagtgcctct tcgaggcagt 121 atttttcaat gcaacaccgt tctttggcca aaaagtcaat ttgggacgcc aaaccctttg 181 gcttccaacg gttgcgctcc aagcaggaag atgatactac aggccaactg aaggaacagc 241 agcagccgag tcctgaatcc ttgggaaaag tctcggaagc gcaaaaactg ccaaatgtgg 301 gagcctacgt tcgcatgatc tccgccgatg gcaagagcct gcgcgacgtg ctgaccgcca 361 aggtgcccca ggagcaggag cgcgtgaaga acttccgcaa gcagcatggc gccaccaaga 421 tgggcgagac gaccatcgac atgatgtacg gcggcatgcg cggcatcaag gccctggtca 481 cggagacctc ggtgctggac gctgacgagg gcatccgctt ccgcggcctc tccattcccg 541 agtgccagaa ggttctgccg gccgccgatg gcggcactga gcccctgccc gagggtctct 601 tctggctgct gctcaccggc gaggtgccca ccaagtcgca ggtccagcag ttgtcccgcg 661 aatgggccga gcgtgccgct ctgccccagc acgtggtcac catgctgaac aacatgccca 721 ccaccctgca tccgatgtcg cagttcgccg ccgccgtcac cgctctcaac cacgacagca 781 agttcgccaa ggcctactcg gatggcgtgc acaagagcaa gtactgggag tacgtctacg 841 aggacagcat ggatctgatc gccaagctgc ccgtcgtggc ggccaccatc tactgcaaca 901 cctatcgcgg cggcaagggc tcccgctcga tcgactcgag cctggattgg tcggccaact 961 ttgtgaagat gctcggctac gacaatgccc ccttcaccga gctgatgcgt ctctatctga 1021 ccatccacag tgaccacgag ggcggcaatg tgtcggccca caccgttcat ctggtcggct 1081 cggccctcag cgatccctac ctgtccttcg ccgccggcct gaacggtctc gctggtcccc 1141 tgcacggcct ggccaaccag gaggtgctcg tgtggctgcg caagctgcag aaggaggccg 1201 gcaacaaccc ctcggaggag cagctcaagg agtacatctg gaagaccctc aagtcgggac 1261 aggtggttcc cggctacgga catgccgtgc tccgcaagac cgatccccgc tacacctgcc 1321 agcgcgagtt cgccctgaag cacctgcccg acgacgagac cttccagctg gtgtcgaaga 1381 tctacaaggt ggtgccccca atcctcaccg agaccggcaa ggtgaagaac ccctggccca 1441 atgtggacgc ccattccggt gtgctgctgc agtactacgg catgaaggag atgaactact 1501 acacggtgct gttcggcgtg tcccgcgccc tcggcgtgct ggcctccctc gtctgggatc 1561 gcgccctcgg cctgcccatc gagcgcccca agtccttctc caccgatctg ctggtcaaga 1621 tggtccagaa gtaagaggca tctggaggag caggaggagc gggtagagct ggagtgttca 1681 accttttata gccagaggat gatggacgat ggacgatgga tgcagaagct gtagattgta 1741 attgacgagg gagaggaaga tggagaggga gattcgattg acgatcgatc gatgtgacga 1801 cgctgatatt gagagagttg gatatgtgta gttggagaag gagaaggaga acagcaacca 1861 aatacgaacc aataggaaaa ccagaagaaa actgcaacac actgcaactg caacctgcaa 1921 cagcaaaaca ataagttgga aataaggcag aaacttattt ttagtagtaa aataattaac 1981 gaagagagaa accagcaaaa gcaaaagcaa ccacttaatt aattgtataa gctatatata 2041 tacatacacg attgactata tatataggga ggacaggcag agagaagaat gtttgcgcct 2101 attgtttatg ttcagcattt cccccttccc catctaaacc acccaccacc aacgatcccc 2161 cactctatat atttagtttg ttatgttttc atcttagccg atcgactaac caccaccacc 2221 accctaatgc tttatccccc caaaatgccc gaaatgtccg acccaccagc accaccaccc 2281 cgcctgaaaa cctaaaaaaa ttactaactt gataacattt tacttttaat ttaactataa 2341 tttattatgc aaacaagata caaacgagag aaatacaata cataaaaaca agtgtaaaga 2401 aaccaacaaa tacattaaaa aaacgaaaca aaactcaata aaaaaacaga acaataaata 2461 atataaagca tagagagtag ttattgccaa caactatcta aaaccagtgg aatctgcaaa 2521 gcgttcgttc attgccttgt gtgcaagtgt gtattcgaga aagcaaaccc acaataaatc 2581 gtagcaaact tgaagatcga aaatcgtaa