Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_070218877 5275 bp mRNA linear INV 09-DEC-2024 1A (RhoGAP1A), transcript variant X4, mRNA. ACCESSION XM_070218877 VERSION XM_070218877.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5275 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5275 /gene="RhoGAP1A" /note="Rho GTPase activating protein at 1A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108055801" CDS 275..4237 /gene="RhoGAP1A" /codon_start=1 /product="active breakpoint cluster region-related protein isoform X3" /protein_id="XP_070074978.1" /db_xref="GeneID:108055801" /translation="MASFKEKFKLWSRGKSSLNLRESSTSSGGKDKDRLSLNTDNKYT THTNAAGSGSGGGTAAGAGAGSTSGPLHSAPPTGKRIAELNFEREERDKDSGNEKDTN GALQQCITELAASIKAQPDNGASSTGGGGAGGAGGSTDGGDKEKQPLRKSTSQYVTVI QVKEAKEKEGDDGGASDPQQSQQPTPPSTFARYAEASAPPLSPSLTSYAAHVEAKKKM PPRPPPKNIRRVEPPTIPSQQQQQLSSSPKRETPFVGSSMPLPSSSGGSLSSDSPGNS LERNIKPSDILRQKSSENLDSKYAANRKTTPELGKFVNVNNPELMEELGRKMVGKTDS LEQAKRNDSSPSGGGSLGRTASTPGRSLTPGRTGVGASPTGSLNKTAKLAAADSSSTS SLEKKSRNCLQASDAEGGTGTNQRSVGSKESLASQGISEVIKSYESVSSLSSESAKAA ATAAASQQSAADNEPYYDSVPLDNGDGEYVFIKPGRTGSSSSRDDLSTPGSSTLPLAN PADPESPGRTSNYVNIDYFLQQSNETRSSSLDSDGEYEGPPILRTISHDEQTTSQTTP GALRKNLVSAILVSGNARGAKIRSILSSIIQSETIYVECLNKMMQYKKAIHATLNTSQ PVIKEEEENTIFFKIDELHDLHTAFLSDLKTIVSHEGGDVLIGEPFRRLADMFDLYSA FLHNYKNAIETVKKCSANNPQFKKIVSTIVVNLQTEQSLTLEDLLHKPVARVQINALV FNDLLRETPMAHPDHQPLRQAQKIIQMFLNQFNVVNQRLPSESNRNLRRMVRNSFIVE LVDGHRKLRHLFLFNDVIACAKYKALGRDRIDYELKWFIPLKEISIIEEADPAAELKE SSPANISQVKRNLRSVRDQLAMEVANSGGGGVRSGDKYRRKLADLESQLVLATPNLVL RLANKANNKTMTFFLSSDFERTQWIDSITSLKQKCNLPGANTINSLEVTAFIVAMQKG MKTEMGSYLMRNTNDESLLVGDLHMAVQGLGGLEQAADLYICIEVDSYGHYFRKATTK MVCRSQTPLWNESFMLELEGSQNVRILLYEAKERPLLRAKHILKLSLSWLTETTQPRT IKLSETLELGCSFRFVPGELCRATTKPGALFGAKMSQVLKREKRDIPFIISACIREVE RRGMLEVGCYRVSGSASDLAKLKKAFESDAYEAEQLLREVDIHSVTGILKTFLRELPE ALFTDQLYPRFFDTFSAFSNNNESTRINELLKVFEELPQVNKASINSILDHLIRVHEK ETDNKMSLHNLAMVFGPTLLRPGQTQVKQKDPLAASTVDVMAQAGILYCFLQARIKKD " misc_feature 2045..2593 /gene="RhoGAP1A" /note="Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Region: RhoGEF; smart00325" /db_xref="CDD:214619" misc_feature order(2054..2056,2066..2068,2357..2359,2444..2449, 2456..2461,2465..2470,2477..2482,2489..2494,2501..2503, 2579..2581,2591..2593) /gene="RhoGAP1A" /note="GTPase interaction site [polypeptide binding]; other site" /db_xref="CDD:238091" misc_feature 2573..3133 /gene="RhoGAP1A" /note="Breakpoint Cluster Region-related pleckstrin homology (PH) domain; Region: PH_BCR_arthropod; cd13368" /db_xref="CDD:270174" misc_feature 3257..>3454 /gene="RhoGAP1A" /note="C2 domain; Region: C2; cl14603" /db_xref="CDD:472691" misc_feature 3629..4216 /gene="RhoGAP1A" /note="GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to...; Region: RhoGAP; cl02570" /db_xref="CDD:470621" misc_feature order(3743..3745,3860..3862,3872..3874,4088..4090, 4097..4102,4190..4192) /gene="RhoGAP1A" /note="GTPase interaction site; other site" /db_xref="CDD:239852" misc_feature 3743..3745 /gene="RhoGAP1A" /note="catalytic residue [active]" /db_xref="CDD:239852" polyA_site 5275 /gene="RhoGAP1A" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttttttttt ttgcattcgt agagctccgt cttccgtttt tcgcgtgtgt gtgtgtttat 61 gttaacgtgt tttttttcgg ttgactcaag tttcgtggtc gtcgtcgcct agtcatcgtc 121 actaagtcgt cggatcgccc cctttttttc cagccccggg attacaatag ggtactacac 181 tccctcggat ttgcggtcgt attattattt ttaaaccaaa acaaaggggg cgaataagga 241 aaataaccca acaaagtggc gctgatttcg gagcatggct tcttttaagg agaaattcaa 301 attatggtcc agagggaaat ccagtttaaa tctgcgcgag tcctcgacgt cgtccggcgg 361 caaggacaag gatcgcctgt cgctcaacac ggacaacaag tacacaacac acacgaatgc 421 cgctggcagt gggagtggcg gcggtacggc agcgggagcg ggggcgggat ccaccagcgg 481 tccgcttcac tctgccccgc cgacgggcaa acggatagcg gagctgaatt tcgagcgaga 541 ggagcgcgac aaggacagtg gcaacgagaa ggacaccaac ggagctctgc agcagtgcat 601 cacagagttg gcggcctcga taaaagccca gccggataat ggggcatctt caacaggagg 661 aggaggagct ggaggagcag gaggatcaac cgatggcgga gataaggaga aacaaccgct 721 gcgcaaatcc acctcgcaat acgtcaccgt catccaggtg aaggaggcca aagagaaaga 781 gggcgacgat ggaggagcca gtgacccaca gcagtcgcag cagcccacgc cgccctcaac 841 attcgctcgc tatgcggagg ccagtgctcc tccgctgtcg ccgtcgctca cctcgtacgc 901 agcccacgtg gaggccaaaa agaaaatgcc acccagacct ccgccaaaga acattcgccg 961 cgtggagccg cccaccattc ccagccagca gcagcagcag ctgtcgtcgt cgccaaaaag 1021 agagactccc tttgtgggca gctcgatgcc gctgcccagc agctccggcg gcagcctctc 1081 ctccgacagt ccgggcaatt cgctggagcg caacatcaag ccctcggata ttctgcgcca 1141 gaagtcgtcc gagaatctgg attccaaata tgcggcgaat cgcaaaacaa caccggagct 1201 gggcaaattt gtgaatgtca ataatcctga gctaatggag gagctgggcc gcaagatggt 1261 gggcaagacg gacagtctgg agcaggccaa gcggaatgac tcctcgccct cgggcggcgg 1321 cagtctggga cgcactgcct ccacaccggg gcgatcattg acaccgggac gaacgggcgt 1381 cggggcctcg cccacgggta gcctaaacaa gaccgccaaa ctggcggcag cggacagcag 1441 ttcgacgagc agtctggaga agaagtcgcg caactgcctg caggccagcg atgcagaggg 1501 tggaacggga acgaatcagc ggagtgtggg ctccaaggag tcgctggcat cgcaaggcat 1561 atcagaggtg atcaagagct acgagagtgt ctcctcgctg agttcggaaa gcgccaaggc 1621 ggcggcgacg gcggcagcat cccagcaatc ggcggcggac aacgagccgt actacgatag 1681 cgtgccgctg gacaacggcg acggggagta cgtgttcatc aagcccggtc gcaccggttc 1741 ctcctccagt cgcgatgatt tgtcaacgcc cggcagcagc actctgccgc tggccaatcc 1801 ggcggatccc gaatctccag gcaggacctc caactacgtc aacatcgact acttcctaca 1861 gcaaagcaat gagacgcggt ccagttcgct ggacagcgac ggggagtacg agggtccgcc 1921 catattgcgc accatttccc acgacgagca gaccacgtca caaactacgc cgggagcact 1981 tcgcaagaac ttagtttcag cgatacttgt ttctggaaat gcccgcggtg ccaaaatacg 2041 atctatactc agctcaatca ttcagagcga gacgatctac gtggagtgcc tcaataaaat 2101 gatgcagtac aagaaggcga tccacgctac cctgaacaca tcgcagcctg tgatcaagga 2161 ggaggaggag aacacgattt tcttcaagat cgacgagctc cacgatctgc acaccgcctt 2221 cctgtccgac ctgaagacga tcgtttccca cgagggcggc gatgtgctga tcggtgagcc 2281 cttccgtcga ctggccgata tgttcgatct gtatagcgcc ttcttgcaca actacaagaa 2341 cgccatcgag acggtgaaga agtgcagtgc gaacaatccg cagttcaaga agatcgtctc 2401 caccatagtg gtcaatctgc agacggagca atcgctgacg ctggaggatt tgctgcacaa 2461 gccagtggct cgagtgcaaa taaatgcctt ggtcttcaat gatttgctgc gcgaaacgcc 2521 gatggcgcat ccggatcacc agccattgcg gcaggcgcaa aagatcatcc agatgttcct 2581 gaatcaattc aatgtcgtca atcagcggct gcccagcgaa tcgaatcgaa atctgcgacg 2641 catggtccgt aattcgttca ttgtggagct ggtcgatggc catcgcaagt tgcggcatct 2701 cttccttttc aacgatgtga tcgcatgcgc caagtacaag gcactgggca gggatcgcat 2761 cgactatgag ctcaaatggt tcataccact gaaggagatt tcgatcatcg aggaggcgga 2821 tccggcggcc gaactgaagg aatctagtcc agcgaacata tcgcaagtga agcgcaattt 2881 gcgctccgtt cgagatcaat tggccatgga ggtggcgaac agtggaggcg gcggtgtgcg 2941 ttccggcgac aagtatcgcc gcaagctggc cgatctggag tcacagcttg tgctggccac 3001 gcccaatttg gtgctccggc tggccaataa ggcgaataac aagaccatga ccttcttcct 3061 cagctcggat ttcgagcgga cgcagtggat cgactcgatc acgtcgctca agcaaaagtg 3121 caacctgccc ggagccaata cgatcaattc gctggaggtc accgccttca ttgtggccat 3181 gcagaagggc atgaagactg aaatgggctc gtatctgatg cgcaacacca acgacgagag 3241 cctgctggtg ggagatctgc acatggccgt ccagggattg ggcggcttgg agcaggcggc 3301 cgacctgtac atctgcatcg aggtggactc ttacggtcac tatttccgca aggccaccac 3361 caagatggtg tgtcgcagtc agacgccgtt gtggaacgag agctttatgc tggaactgga 3421 gggcagccag aatgtgcgca ttcttctcta cgaggccaag gagcggccgc tcctgagagc 3481 caagcacata ctcaagttga gcctcagttg gctgacagaa accacgcagc cgcgaacaat 3541 taagcttagt gagaccctgg agctcggctg cagcttccgg tttgtgcccg gcgagctatg 3601 ccgcgccacc actaagccag gagccctctt tggtgccaaa atgagtcaag tattaaaacg 3661 cgagaaacgc gacattccgt tcatcatcag tgcctgcatt cgtgaggtgg agcggcgggg 3721 aatgctggag gttggctgct atcgcgtcag cggttccgcc tccgatttgg ccaagctcaa 3781 gaaggcattt gagtcggatg cctatgaggc ggagcagctg ctgcgcgaag tggacatcca 3841 ttcggtcacg ggcattttga agaccttcct aagagagctg cccgaggctt tattcacgga 3901 tcagctatat ccacgattct tcgacacatt cagcgccttt agcaacaaca acgaatccac 3961 gcgaatcaac gagctgctca aagttttcga ggagctgccg caggtcaaca aggcctccat 4021 caattcgatt ctagatcatc tgattagagt ccacgaaaag gagacggaca acaagatgtc 4081 gctgcacaat ctggccatgg ttttcgggcc caccctgctg aggccgggac aaacgcaggt 4141 gaagcaaaag gatccgctgg ccgcgagcac cgtcgatgtg atggcccagg ccgggatcct 4201 ctactgcttc ctgcaggcgc gcatcaagaa ggattaggac tttggaacag ccgtctgcac 4261 agatatacat atggaatata tatatatata aacatatata tatatatgca cataaattat 4321 atattttttt tacatagcaa tagcggtaat acgaacgaaa ttcgatggat agcctacgca 4381 tacaccacgc ccccacctgt cagccaccac acgccccctg cacaaagtat acacacacaa 4441 aaaaaacagc taaacacctt aaaaccttcc gggaaacgcc tgaaaaaaca ccttgaaaac 4501 gcttatagag cttgaaaaat atcgaaagtt tgctatttct tgatatttaa tttgaaaaca 4561 tcgatattat cgaattaata ttatcgaaaa tatcgataat tttcaagttc taattgaaaa 4621 aaacacttaa atacacctgc gctgccaatt gtatatacca gaaaccgaaa ctgcaactaa 4681 aagctgaaga tatggatgga tctggcgagg aatacggacg gaggaggccc cttttcgggg 4741 atgtgaacaa atctgctcaa tggcgggctc acacacacac gcacaacgca acacaacaca 4801 acacacacac atcagcaaca cacacctggg atgatcaagt gtctaacact aattagctgc 4861 tcctccgctt actaaatatt attcccatgt attacagata tttccgtaga tctgtagact 4921 gtatgctgct ttacctttag attgcgacct ttattagctt actgcaacta ttgcaaaaaa 4981 aaaaagagaa agaaagaagg gaaagcagaa aattgcaaat attttcaata ttacacgtat 5041 atatctagag acatatatac gcaacctata tataattaat tactactact agtactataa 5101 tttactaaag tgaggtagca agtttttccg gctgattgat caatgattga tatacgatgt 5161 acgatgtatg tgtttgctta aaaaattctg tttttttttt tcgtcttgtt ttatattaat 5221 tatttaggtt tttatataaa cagaagcgta aaataaaata tattctattt agaaa