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LOCUS XM_070218818 1910 bp mRNA linear INV 09-DEC-2024 5A (RhoGAP5A), mRNA. ACCESSION XM_070218818 VERSION XM_070218818.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1910 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1910 /gene="RhoGAP5A" /note="Rho GTPase activating protein at 5A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108058452" CDS 134..1579 /gene="RhoGAP5A" /codon_start=1 /product="N-chimaerin" /protein_id="XP_070074919.1" /db_xref="GeneID:108058452" /translation="MPRNTEAGAPEPSSPVQKVWKPELYKLQLEAPAPCPLRCQRTLP LPPAKSTAEAVEANNLAGRLYGSEYHGLMGHLEAEQLLANARDGSYFVRRSPQSDGYY TLSLRFNKRPKHYKLLYKTGCGHYLRGQDKRFDTVHDMVADGLINFHMQLHASPIIQQ INQQTKNCYQQSPYMTLNGRKLRALSNELGKQSKEQPQPEEQQPEEEEELPATASTVD PMPLVYEKPHHFKVHTFKGLNWCEFCANFLWGFTAQGRKCEACGFVAHSKCSELVPAK CVPDLKRIRGVFGTDLTTMVQLEPHHQIPFVVRRCVEEVEARGMLQEGIYRVSGFADE IEALKLALDREGERTDMSETAYGNVNVIAGTLKLYLRLLPVPLITFQAYPSFMAAGRS GKPAEQRQLMAEAVRRLPPAHHACLQYMLEHLKRVASHYAVNKMNEHNLATVFAPTLI ATPQHMTNLTEEIFMLSSLIAHCQTIFATTS" misc_feature 314..589 /gene="RhoGAP5A" /note="Src homology 2 (SH2) domain found in alpha2-chimerin and beta2-chimerin proteins; Region: SH2_a2chimerin_b2chimerin; cd10352" /db_xref="CDD:198215" misc_feature order(356..358,410..412,473..475,479..481) /gene="RhoGAP5A" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198215" misc_feature order(476..478,551..553) /gene="RhoGAP5A" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198215" misc_feature 812..970 /gene="RhoGAP5A" /note="protein kinase C conserved region 1 (C1 domain) found in the chimaerin family; Region: C1_CHN; cd20806" /db_xref="CDD:410356" misc_feature order(830..850,872..886,893..895) /gene="RhoGAP5A" /note="putative DAG/PE binding site [chemical binding]; other site" /db_xref="CDD:410356" misc_feature 995..1564 /gene="RhoGAP5A" /note="GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to...; Region: RhoGAP; cl02570" /db_xref="CDD:470621" misc_feature order(1112..1114,1232..1234,1244..1246,1451..1453, 1460..1465,1520..1522) /gene="RhoGAP5A" /note="GTPase interaction site; other site" /db_xref="CDD:239837" misc_feature 1112..1114 /gene="RhoGAP5A" /note="catalytic residue [active]" /db_xref="CDD:239837" polyA_site 1910 /gene="RhoGAP5A" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ccctgcattt cgccggcctg gcaaccctgt tcgcctgccc aagcaaaaca ttaagtttaa 61 tttcattaac ttaagaatta actaaagtta tcaacaaaat taattagtta attagcagcc 121 aggcggaagg aggatgcccc ggaacacgga ggcgggcgcc cccgagccca gttcaccggt 181 tcagaaggtc tggaagccag aattgtacaa gctgcagttg gaggccccgg ctccctgtcc 241 gttgcgctgc cagcgcacgc tgcccctgcc gccggcgaaa agcaccgcgg aggccgtgga 301 ggccaacaat ttggccggcc gcctctacgg ctccgaatat catggtctca tgggccacct 361 ggaggcggag cagctcctgg ccaatgcccg cgatggcagc tactttgtgc gtcgcagtcc 421 ccagtccgat ggctattata cgctcagtct ccgcttcaat aagcgcccca aacactacaa 481 attgctctat aaaacgggct gcggtcacta tctgcgcggc caggacaaac gcttcgatac 541 ggtccacgat atggtggccg atgggctcat caacttccac atgcagctcc acgccagccc 601 catcatccag cagatcaatc agcagaccaa gaattgctat cagcagagtc cctacatgac 661 tttgaacgga aggaagttga gggctctctc gaatgagctg ggcaagcaat ccaaggagca 721 gccacagccg gaggagcagc agcccgagga ggaggaggag ctgccagcga ctgcctctac 781 ggtagatccc atgccgttgg tctacgagaa accgcatcat ttcaaggttc acacttttaa 841 aggcctcaat tggtgcgagt tctgtgccaa tttcctgtgg ggctttacgg cgcagggcag 901 gaaatgcgag gcctgcggct ttgtggcgca cagcaagtgc tccgaactgg tgccggccaa 961 gtgtgtgccg gatctcaagc gcatacgtgg cgtatttggc acggatttga cgaccatggt 1021 gcagctggag ccgcaccatc agataccctt tgtggtgcgg cgctgcgtgg aggaggtgga 1081 ggccaggggc atgctgcagg agggtatata ccgagtatcg ggctttgccg atgagatcga 1141 ggcgctcaaa ttggccctcg atcgggaggg tgagcggacg gacatgtcgg agacggcgta 1201 cgggaatgtg aatgtgattg ccgggacatt gaagctatat ctgcgcctgc tgcccgtgcc 1261 gctgatcaca ttccaggcgt atcccagctt catggcagca ggacgcagcg gaaagccagc 1321 ggagcagcgg cagctcatgg cggaggcagt gcgtcgcctg ccgcccgccc atcacgcctg 1381 tttgcagtac atgctggagc acctgaagcg cgtggcctcc cattatgccg tcaacaagat 1441 gaacgagcac aatctggcca ccgtctttgc gcccacactg attgccacgc cccagcacat 1501 gacgaacctg acggaggaga tcttcatgct ttcctcgctc atcgcccact gccagaccat 1561 ctttgcgacc acgtcctgaa aaggaaagaa agccttaaat cttaaacttt aaactttaaa 1621 ctcagcccaa tgccaaaatg aagtccacag gggccctctg ataggccctc tctttcgaaa 1681 cggaacccag atgtggttta ctcgacgatt ccaccaaaaa tgtagcctaa gatcaaatat 1741 ccaatgcttt ttaatccctt ctttttaaac acacacacac aaaaatccag tagaatacat 1801 tgaatgttgt aggagtacga atttaacgat ttttcgaaat attttttagg tgaagtattt 1861 tatgtcacaa taataaagat atgtatttat ttttactttt tacaatgtaa