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LOCUS XM_070218700 1507 bp mRNA linear INV 09-DEC-2024 alpha7 (nAChRalpha7), transcript variant X3, mRNA. ACCESSION XM_070218700 VERSION XM_070218700.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1507 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1507 /gene="nAChRalpha7" /note="nicotinic Acetylcholine Receptor alpha7; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108066885" CDS 246..1343 /gene="nAChRalpha7" /codon_start=1 /product="neuronal acetylcholine receptor subunit alpha-7 isoform X3" /protein_id="XP_070074801.1" /db_xref="GeneID:108066885" /translation="MKRQSLSRRLDNLFCSSQETNMSFPQPHTLPEAPANGGKMLVYG LGLLIMIPACTAGPHEKRLLHALLDNYNSLERPVVNESDPLQLSFGLTLMQIIDVDEK NQLLITNIWLKLEWNDMNLRWNSSEFGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTY ATNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQD EAGGDISSFITNGEWDLLGVPGKRNEIYYNCCPEPYIDITFAILIRRKTLYYFFNLIV PCVLIASMALLGFTLPPDSGEKLSLGVTILLSLTVFLNMVAETMPATSDAVPLLDKSN IPLLVTLHIAHAKTRTGWLRMSAAALIIEFI" misc_feature 507..1043 /gene="nAChRalpha7" /note="extracellular domain of nicotinic acetylcholine receptor; Region: LGIC_ECD_nAChR; cd18997" /db_xref="CDD:349798" misc_feature order(528..530,534..536,552..557,576..578,642..644, 648..650,675..680,684..686,690..695,705..707,711..716, 726..734,738..740,768..770,774..776,780..782,792..794, 858..860,1041..1043) /gene="nAChRalpha7" /note="pentamer interface [polypeptide binding]; other site" /db_xref="CDD:349798" misc_feature 795..839 /gene="nAChRalpha7" /note="Cys-loop [structural motif]; Region: Cys-loop" /db_xref="CDD:349798" misc_feature 1047..>1235 /gene="nAChRalpha7" /note="transmembrane domain of Cys-loop neurotransmitter-gated ion channels, includes 5HT3, nAChR, and ZAC; Region: LGIC_TM_cation; cd19051" /db_xref="CDD:349853" misc_feature 1047..1121 /gene="nAChRalpha7" /note="TM1 helix [structural motif]; Region: TM1 helix" /db_xref="CDD:349853" misc_feature 1143..1208 /gene="nAChRalpha7" /note="TM2 helix [structural motif]; Region: TM2 helix" /db_xref="CDD:349853" ORIGIN 1 cgaaaagcat tagattagaa agaaagaaag tcagtggctc caaaaagttg gtaacaagta 61 gccgaagtaa ttcgaatatc gactataaca ccaacgtacc ggaggacaga caacaagcaa 121 aatgcaaaac tatggaagtg aacttaaggg aggctgagtc gtcttactaa cttgctaact 181 gtctgcgcgc ccaaacatct gattatcgga ttcggattcg gattccaagg gttaagaagt 241 aagatatgaa gaggcaatca ctgagtcgtc ggttggacaa tctattctgc tccagtcagg 301 aaacaaacat gagcttccca cagccgcaca cattgccgga agccccagca aacggtggta 361 agatgctggt ttatggcctg ggtcttctaa ttatgatacc ggcttgtacg gctggacccc 421 atgaaaagcg gttgctacac gcccttctgg acaactacaa cagcttagaa cgtccggtgg 481 tcaacgaatc cgatccattg caactgagct tcggactaac actcatgcag attatcgatg 541 tggatgaaaa gaaccaactg ctaattacga atatttggtt aaaattggaa tggaatgaca 601 tgaatcttcg atggaattcg agtgaattcg gaggtgtacg tgatcttcgg attccaccac 661 atcgcttatg gaaaccggat gttctaatgt acaatagtgc ggatgaggga ttcgatggga 721 cgtatgccac aaatgtggtg gtgcggaaca atggaagctg tctgtacgta cctccaggta 781 tattcaaatc tacatgcaag atcgatatta cgtggtttcc attcgacgat caaagatgtg 841 agatgaagtt tggttcatgg acctacgatg gttttcaatt ggacttgcaa ttacaagacg 901 aagcaggagg agatatttct agctttataa caaatggcga atgggacttg ttaggtgtgc 961 ccggtaaacg aaatgaaatc tactataatt gctgcccaga accttatatt gacataacat 1021 tcgccatttt gataagacgc aagacactgt actatttttt caatctgatt gtgccgtgcg 1081 tactgattgc ctcaatggca ctgctaggtt ttacactgcc accagattct ggtgaaaagc 1141 tttcgcttgg agttacaatt ttattatcgc ttacagtctt cctcaacatg gtggccgaaa 1201 caatgccggc gacctctgat gcagtgcccc tgctcgataa gagtaatatt cctttattgg 1261 ttaccttgca tattgcgcat gcaaagaccc ggacaggttg gctacgaatg tccgccgccg 1321 ccctcatcat cgagttcatc taattctggc gagaaaaagc aacagattca aaatgttgag 1381 ctcaaggaga gatcttccaa gtctctgctg gccaacgtcc tcgacataga cgatgacttt 1441 cgatgcaatc atcgatgtgc cagtgcgact ttgcctcacc agccaacgta ttacaggacg 1501 atgtaca