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LOCUS XM_070218655 2519 bp mRNA linear INV 09-DEC-2024 (Rhp), transcript variant X2, mRNA. ACCESSION XM_070218655 VERSION XM_070218655.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2519 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2519 /gene="Rhp" /note="GTP-Rho-binding protein rhophilin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056740" CDS 116..2293 /gene="Rhp" /codon_start=1 /product="rhophilin-2-A isoform X1" /protein_id="XP_070074756.1" /db_xref="GeneID:108056740" /translation="MFNLGAMDGKTDELAQRAGKNEENEDDEKLNELSFCFVRGSDPR AATCRSKLQNRRCKLNKEINKELRLRAGAENLYKATSNRKLRDTVALELSFVNSNLQL LKEQLAELNSSVEIYQSESHNGIMPMIPLGLKETKEINFMEPFSDFILEHYSEEPSMY IDAIADMTDTRQASKTPSRDALGVALLFRYYNTLYYVERRFFPPDRNLGVYFEWYDSL TGVPSCQRTIAFEKACTLFNLGGIYTQIGARHDRTTERGLDLAVDSFLRAAGIFRHIY DTFTNAPSMDLKPQVLDVLVSLMLSQARECLFEKLQLQIEAIGLSEFSCSDSQSFRDL AGEAAQISHEYNEMHKNIQANDTHTYLPECWAGLVPVKAELYKAFAHFYKARSIDATD EIKVSRNQDKLSTESFIGNSQEVESNFGTSEEAATSNANKLAHLKEALASIEEAQRLQ RMCRYLKNKSSLTEVMKEVHSKSQEELDRFRLQASANNIEEGDLLERVVEASSKFTLS LTGPDFTSHKVKDPFKRLGPIAIFSARRHWTAPRCVRLQKGSSSYHNVPANNRCPLDN DDEEHDGGFNLYKEEFENFGFHVRGDAPVIIAHVEINSLADLGGIKEGDFIVEIAGMD VKWYSHQQVVQLIQSCGSALELRVITPMDRNYLKPLSSKGSLSTLSAASSSGISSGFP SPTSIAAKPKLHLKTSSSSRAAGSVSSSSWNPFRRTPSLAKIF" misc_feature 233..487 /gene="Rhp" /note="Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Rhophilin-1; Region: HR1_Rhophilin-1; cd11633" /db_xref="CDD:212023" misc_feature order(284..286,293..295,302..307,314..319,323..328, 335..340,344..349,392..397,404..406,413..418,425..427) /gene="Rhp" /note="putative Rho binding site 1 [polypeptide binding]; other site" /db_xref="CDD:212023" misc_feature order(308..313,317..322,329..334,338..343,350..355, 377..382,386..388) /gene="Rhp" /note="putative Rho binding site 2 [polypeptide binding]; other site" /db_xref="CDD:212023" misc_feature 497..1684 /gene="Rhp" /note="Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains; Region: BRO1_Rhophilin; cd09244" /db_xref="CDD:185767" misc_feature order(842..844,851..853,890..892,899..904,1034..1036, 1043..1048,1103..1105,1112..1117,1634..1636,1640..1642, 1646..1648,1652..1654) /gene="Rhp" /note="putative ESCRT-III binding site; other site" /db_xref="CDD:185767" misc_feature 1868..2062 /gene="Rhp" /note="canonical PDZ domain; Region: PDZ_canonical; cl49608" /db_xref="CDD:483948" misc_feature order(1868..1885,1907..1909,1916..1918,2003..2005, 2015..2017,2024..2029) /gene="Rhp" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467153" polyA_site 2519 /gene="Rhp" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 actaccgagc gaaataacca gttttagact ttacggtggt tcggaaactc gtacctggcg 61 ctatagttgt cgaaagtagt ataaacactt aagaggactc ccatcggatc tccgaatgtt 121 taatcttgga gccatggatg ggaaaaccga tgaactggcc cagagagctg ggaaaaatga 181 ggagaacgag gatgacgaga agctgaatga gttatccttc tgttttgttc ggggttccga 241 tcccagagcg gcaacatgtc gtagcaaact gcaaaacagg cggtgcaagt tgaacaaaga 301 gattaacaag gaactccgct taagagctgg tgctgagaat ctatataagg ccacatccaa 361 ccgaaagtta cgagacacag ttgccttgga actgagcttt gtcaattcaa atttgcaatt 421 gctgaaggag cagctggctg agttgaattc ctcggtggaa atctatcaga gtgaaagtca 481 caatggcatt atgcccatga taccactggg cttgaaggaa accaaggaga ttaactttat 541 ggaaccgttt tccgacttca ttttggaaca ctacagcgaa gagccctcga tgtacataga 601 tgccatagcg gatatgacag atacgagaca ggcctccaaa acgccatcac gtgacgccct 661 cggggtggcg ctacttttcc gctactacaa cacactgtac tacgtggagc gtcgcttctt 721 tccgcccgat cgcaatttgg gtgtctactt cgagtggtac gactccctga cgggcgttcc 781 ctcgtgccag cgcaccattg ccttcgagaa ggcctgcacc ctgttcaatc tgggggggat 841 atacacccag atcggggccc ggcatgatcg caccaccgaa aggggtctcg atttggccgt 901 ggatagcttt ctccgggcag cagggatctt ccgtcacatc tacgatacat tcacgaatgc 961 cccttcgatg gatctgaagc cgcaggtcct cgatgtcctt gtctcgctga tgctctccca 1021 ggcacgcgag tgtctcttcg agaagttgca gctgcagatc gaggcgatag gtctctccga 1081 attcagttgc tccgattcgc agtcgtttcg ggatttggcc ggagaggctg cccagatatc 1141 gcacgagtac aatgagatgc acaagaatat ccaggcgaac gatacgcaca catatctgcc 1201 ggaatgttgg gctggtctgg tgccagtcaa ggcggaactc tacaaagctt ttgcccattt 1261 ctacaaggca cgcagcatag atgcgacgga cgagatcaag gtgtccagga accaggacaa 1321 attatccacg gaatccttta tcggcaactc ccaggaggtg gagtccaatt ttggcaccag 1381 cgaggaggcc gccacttcca acgccaacaa gctggctcat ctgaaggagg cactggccag 1441 catcgaggag gcccagcgat tgcagcgaat gtgtcggtac ctaaagaaca agtcatcgct 1501 cactgaggtc atgaaggagg tgcattccaa gtcgcaggag gagttggata ggttcagact 1561 tcaggcttcg gcgaataata tcgaagaggg cgaccttctg gagcgagtcg ttgaagcttc 1621 ctcaaagttc acgttatccc tgacgggacc cgatttcacc tcgcacaagg tgaaggatcc 1681 cttcaagcgc ctcgggccca ttgcaatctt ctcggcgcga cgccactgga ctgcgccgcg 1741 atgtgtgcgc ctgcagaagg gttcatcctc gtaccacaac gtgcccgcca ataacagatg 1801 tccgctggac aacgacgacg aggagcacga cggcggcttc aatctgtaca aggaggagtt 1861 cgagaacttt ggcttccatg tgcgcggcga tgcgccggtc ataattgccc acgttgagat 1921 caattcgctg gcagacctgg gcggcatcaa ggagggggac ttcatagtcg agatagctgg 1981 catggatgtc aagtggtatt cgcatcagca ggtcgtccag ctcatccagt cgtgcggctc 2041 cgcactcgag ctgcgggtca taacgcccat ggatcgcaac tatctgaagc ctctgtcgtc 2101 gaagggctcg ctgtccacgc tctcggcggc cagctcatcg ggcatctcct ccggctttcc 2161 cagtcccacg agcattgcgg ccaagcccaa gcttcatctg aaaacgtcgt ccagttcgcg 2221 agccgccggc agcgtttcgt ccagttcgtg gaatcccttt cggcgaactc cgagcttagc 2281 taaaatattt taggtagcga ccagttttac tttgtgtttt cttggccatt tcagtttaga 2341 gctaatgtta ggcaataaac ttaattattt tttacaaact taatcatgca tcacgttcgt 2401 taaattataa acttatttaa ttttcctcct cctcttctcc caccaagaaa taatctgcta 2461 aataaaaatt aactctaatc attttatttt ttgtaaataa atcaaaataa ttaccttca