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LOCUS XM_070218575 9031 bp mRNA linear INV 09-DEC-2024 factor 2 (Trf2), transcript variant X7, mRNA. ACCESSION XM_070218575 VERSION XM_070218575.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9031 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..9031 /gene="Trf2" /note="TATA box binding protein-related factor 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:108070355" CDS 540..5198 /gene="Trf2" /codon_start=1 /product="uncharacterized protein Trf2 isoform X4" /protein_id="XP_070074676.1" /db_xref="GeneID:108070355" /translation="MKENEKIPSNLLEIMGIVDSGQRTSTSTSDVNEENRVSSFEPGR RLVLNEVSGEFAQERDTENTSSPSPRKEESNEESADSSDKENQYPNHRPSRADDSRSP DSVAETENFKDSDVEIGANSVVLSESQIQHEQDESLVSDPLEEEEEKEHEEEVASGNE SEEKDSPRQNSFEEGTSGDNNSDKDSPSKASNSSSSTPKRPYSGSDNRSSEERTPKRR RQSVSDSEDNRRTLFTDSEDNPIKQRRLTYREQVEAYRRRVDAGSTPGRKSSSSEEEP PPPSPPFRYSELYWEQRRASDADSEPDSAFKYRPNANYHRTSPRNYSDEEEEEEIPES DTDQNSGGPLGYRVETRSTNYESSETSEDEARRRTVRRVVRRRRRPRNPEHREPEYRG EEQSESSPLPSSESPDRQDNSDENESDEEEKRVIPSRRRTTDDQQPSFSGWGYLTCRQ DADYFSEPTDGKIIRKRKSPFEEESSNQSKRRPSEDTESEDSEKEDSEKVDSEKEDSE KEDSDKEDSDKEDSDKEDSDKEDSDKEDSEKEDSEKEDSDKEDSDNGGSDTEKEDRNT DKRDSDTDNDSNTEDPQDPRDSQDSASDNEQVPDSTGEPDQDNEQFPDSTEEPDQDNE QFPDSTEEPDQDKELGQTAAWTITPDDPKGIQDFQDFVLKQVQLINEIIEVGHQVFQL GSIVCHGDFTFFQTLYERKVPIEEVVELVYRGILGVKEELRVALIARQDLSEPHSKDI IRPGDKLAYLRLDLFNKFVSKVNQSERIVDQRLLELQEVRKQQGLLEQKQRVLERVRQ QREQHRLQQLQVEREREERQEEEQRRLELERHLERWKEDFNRQLRLQREQEEIKLRQE EENRKREEERRSNYDSYYCQLPKHKHREQMQNEMVSIPVANLNGGLKAASSGSGGVVG VVTSSGVVSSAVLANAPRVYLTPSSTFMANRGQVAAGAGATGKIAGGSNVTSSVGTSS ATAGTVRYFSQFSKMQTAGGPSLQRKLANGDTIVLANGNKSLFLSSSGGVGGDKATNG NSLLTAKTELLEEEVMQPGTVIVDCDDDDDEDENENEDEDDEDGEDKDEKNNSHTAKS SGVQQEQPLALTTATNNAAASDDEPELDIVINNVVCSFSVGCHLKLREIALQGSNVEY RRENGMVTMKLRHPYTTASIWSSGRITCTGATSEAMAKVAARRYARTLGKLGFPTRFL NFRIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLKIFST GSVTVTAASVSHVESAIQHIYPLVFEFRKQRSLEELQHLRQKQHKQAGGDPSELEKLI VAENKAAGLDDIFLNTTAAHTKPSPNERTPATSGILTSTIDSMQRLKQIENYSHMMKL TQEERRHIPFQGEKVNPAAASTSAAAAASSGDNICANARRRATECWATKLQYKRPRYN DPGTTGTVNASSTAASSSAASSSSSQAAPHLRTNPLKTAALANARMRGAKMPTVLKPG TRLAPIGGGYLQHQQHLQQQQQLQQQQQKMRQTSFSPSEFDVDDLIEEEESNELDMQY " misc_feature <1890..2453 /gene="Trf2" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 3882..4403 /gene="Trf2" /note="TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the...; Region: TLF; cd04517" /db_xref="CDD:239953" misc_feature order(3897..3902,3906..3908,3984..3989,3999..4001, 4005..4007,4026..4028,4032..4034,4044..4046,4050..4052, 4056..4058,4062..4064,4152..4154,4167..4169,4173..4175, 4260..4265,4278..4280,4317..4319,4323..4325,4329..4331, 4341..4343) /gene="Trf2" /note="putative DNA interaction surface [nucleotide binding]; other site" /db_xref="CDD:239953" misc_feature order(3942..3944,3963..3971,3975..3977,3987..3989, 4005..4007,4011..4013) /gene="Trf2" /note="putative TFIIA interaction surface [polypeptide binding]; other site" /db_xref="CDD:239953" misc_feature order(4203..4208,4242..4256,4263..4265,4278..4280) /gene="Trf2" /note="putative TFIIB interaction surface [polypeptide binding]; other site" /db_xref="CDD:239953" polyA_site 9031 /gene="Trf2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agccagcaag agagagggag agcagcagca gcagcgcggc ggcggccaca gcaacaaagc 61 cacaaaagag agcgacggcg agagagacag agagagaggg ggagagaact agacgacgcg 121 acgacctact acaaaaaaag gctctccaag gaagaaagga taaaagaaga aacaaccatt 181 caaatattta aggactttta agagactgca aaggaacaac aaaaactaca agctaattta 241 aataggagaa agaacggaag actagacata atcgtaatac agagtagttt agcattaggg 301 aaccgacaac aacaaaaacc actgcaaaca ctaattctaa ttcaaaatta cactaaaaga 361 gtattttttc agccctaaga gcaaacacac acacacatac acaccacaca cacaaacgaa 421 agaagaagaa tttgtagaag aatcactttt agccttatat acaactacaa agaaaaaaaa 481 aagaacgcaa gttagtatta agttaagatg ctagaaagag aggacgtagc aagaatccta 541 tgaaagaaaa cgagaagatt ccaagtaatt tgcttgaaat catggggatt gtcgattccg 601 ggcaaaggac ttcgacttcg acttctgacg tgaatgaaga aaacagggta tcttcattcg 661 agccagggcg tcgtcttgtc ttaaacgaag taagcggaga attcgctcaa gaaagagaca 721 ccgagaacac aagttccccg tcgccacgca aggaagaaag caacgaagaa tcagcagatt 781 cttcggataa ggagaatcaa tacccgaatc atcgtccttc aagggcagac gatagtagat 841 ctccggattc tgtcgcggaa actgaaaact ttaaggattc tgacgttgaa atcggcgcaa 901 actcggtagt actttctgaa tcccaaattc agcacgaaca ggacgaatca ttagtatctg 961 atcctctcga agaagaagaa gaaaaagaac acgaagaaga ggtcgctagc ggtaacgagt 1021 cggaagaaaa ggatagtccg aggcaaaata gcttcgagga aggaacttca ggcgataata 1081 atagcgataa agatagtccg tcgaaagctt caaattcttc aagttcgact ccaaagcggc 1141 cttattcggg ttcagacaat cgaagctccg aagaaaggac ccccaagagg cgacgtcagt 1201 cagtttcaga tagcgaggac aaccgccgaa ctttatttac tgactcggaa gataacccca 1261 ttaaacagag gagattaact taccgtgaac aagtagaagc ctatagacgt agagttgacg 1321 ccggaagtac accaggacgg aagagttcat cttcagaaga agaaccgccg ccgccttcgc 1381 caccatttag atattcggaa ttatattggg agcagcggcg tgcttcagac gccgactctg 1441 aacctgattc cgccttcaaa tatagaccta atgcgaatta tcaccgtaca tcaccgcgaa 1501 attatagtga cgaagaggaa gaggaggaga tcccagaaag cgataccgat cagaattcag 1561 gaggaccact aggctatagg gtagaaaccc gtagtaccaa ttacgagtca agcgaaacgt 1621 cagaagacga ggctcgcagg aggaccgtga ggcgtgtagt tcgccggcgt cgtagaccac 1681 gcaatcccga acatcgcgaa cctgagtatc gcggggaaga gcaaagtgag agttcgccac 1741 taccgtccag tgaatccccc gatcgccaag acaacagcga cgaaaacgag agcgacgaag 1801 aggagaagcg ggttatacct tcaaggcgtc gcactaccga cgatcagcag cccagcttct 1861 caggctgggg atatctaacg tgtcgtcagg acgcagacta tttctcggaa cccaccgacg 1921 ggaagatcat caggaagagg aagtcgccat ttgaggaaga atcctcgaat caatcaaaga 1981 gacgaccatc agaagacacc gagagcgaag actctgagaa ggaagactct gagaaggtag 2041 attctgagaa ggaagattct gagaaggaag attctgataa agaagattct gataaagaag 2101 attctgataa agaagattct gataaagaag attctgataa agaagattct gagaaagaag 2161 attctgagaa agaagattct gataaagaag attcggacaa cggaggttct gataccgaga 2221 aggaagatcg aaataccgat aaacgcgatt ccgataccga taacgattcc aatactgaag 2281 atccgcaaga tcccagagat tctcaagatt cggcttctga caacgagcag gttcccgatt 2341 ctactgggga gcccgaccaa gacaacgagc agtttcccga ttctaccgag gagcccgacc 2401 aagacaacga gcagtttccc gattctaccg aggagcccga ccaagacaag gaactaggac 2461 agactgccgc ttggaccatc acacccgatg atcccaaggg cattcaagac ttccaagact 2521 tcgtcctaaa gcaggtgcaa ctgatcaatg aaatcatcga ggtcggccat caagtattcc 2581 aactgggatc aatagtttgc catggtgact ttacgttctt tcaaacactt tacgagcgga 2641 aagttccaat agaagaggtc gttgagctag tctaccgggg cattctcggt gtcaaggagg 2701 agctcagggt ggcattgata gcccgccaag atctaagcga gccacattcg aaagacatca 2761 tcaggccagg agataaacta gcctatttaa gattggattt gttcaataaa tttgtatcaa 2821 aagtcaatca gtccgagagg atcgtggatc aacgccttct tgagctgcag gaggtacgga 2881 aacagcaggg actactggag cagaagcagc gcgtcttgga gagagtgcgc cagcagcggg 2941 aacagcaccg cctgcagcag cttcaggtgg agcgggagcg tgaggagcgc caggaggagg 3001 agcagcggcg cctggagctc gaacgccact tggagcgttg gaaggaggac ttcaatcgcc 3061 agctgcgact gcagcgcgag caggaggaga tcaagttgag gcaagaggag gagaacagga 3121 agcgagaaga ggagcgcagg agcaactacg acagctacta ctgccaactg ccgaagcaca 3181 agcaccgcga gcagatgcaa aacgaaatgg tcagcattcc agtggctaat ttgaacggtg 3241 gcctcaaggc ggccagcagt ggatccggtg gtgtggtcgg tgtggtcacc tcctccggcg 3301 ttgtctcctc ggccgtgctg gccaatgcgc cgcgtgtcta tctgacgccc tcctccacat 3361 tcatggccaa tcgtggtcag gtggcggcgg gggcgggggc caccggaaag attgcaggag 3421 ggagcaacgt aacttcatcc gtcggcacat cttcggccac cgccggcact gtacgctact 3481 tttcgcaatt cagcaaaatg caaaccgccg gcggacccag tttgcagcgt aaactggcca 3541 acggcgacac cattgtgctg gccaacggca acaagagtct gttcctcagc agcagtggag 3601 gcgttggagg cgacaaggcc accaatggca atagtttgct aacggccaaa acggagcttc 3661 tcgaggagga agtcatgcag ccgggaactg tgattgtcga ctgcgacgac gacgacgacg 3721 aggatgagaa tgagaatgag gatgaggacg atgaagatgg ggaggataag gatgagaaga 3781 acaacagcca cactgccaaa tccagtgggg ttcaacagga gcagccgttg gctttgacca 3841 ccgcaaccaa caatgcagcc gcctccgatg atgaacccga actggatatt gttattaata 3901 atgtggtatg ctccttcagc gtgggctgcc acctcaagct gcgcgaaatc gctctccagg 3961 gctcaaatgt cgagtaccgt cgtgagaacg gtatggtgac aatgaagctc cgccatccgt 4021 acacgacggc atccatttgg tcctcgggca ggatcacgtg cactggagcc acctccgagg 4081 caatggccaa ggttgcggct cgccgctatg cgaggaccct gggcaagctg ggatttccca 4141 cccgctttct caacttccgg atcgtgaatg ttctgggcac ctgcagcatg ccctgggcca 4201 tcaagatcgt caatttctcg gagcgccatc gcgagaatgc gagctacgag cccgagctgc 4261 acccgggcgt gacctacaag atgcgcgatc ccgatcccaa ggccacgctc aagatcttct 4321 ccaccggcag cgtgaccgtg acggcggcca gcgttagcca cgtggagtcg gccattcagc 4381 acatttaccc gctcgtcttt gagttccgca agcagcgttc gctggaggag ctgcagcatc 4441 tgcgccagaa gcagcacaag caagcgggcg gtgatcccag cgaactggag aagctgatcg 4501 ttgcggagaa caaggcggcc ggactggatg atatcttcct caacacaacg gcggcgcaca 4561 cgaagccctc gccgaatgag cgtacgccgg ccacatcggg catcctcacg agcaccatcg 4621 atagcatgca gcgtttgaag cagatcgaga attattctca catgatgaag ctgacgcagg 4681 aggagcgccg acacataccc ttccagggtg agaaggttaa cccggcggcg gcttctactt 4741 cggcggcagc tgctgcttcg tcgggggata atatctgtgc caatgcccgt cgccgggcca 4801 ccgagtgctg ggccaccaag ctgcagtaca agcgtccgcg ttacaatgat cccggcacca 4861 cgggcaccgt caatgcctcg tcaacagccg cctcctcctc agctgcctcg tcatcctcct 4921 cacaggcagc gccacacctg cgtactaatc ctctcaagac ggccgctttg gccaatgccc 4981 gcatgcgtgg cgccaaaatg ccaacggtgc tcaagccggg cacgcgtcta gcgcccatcg 5041 gcggtggcta tctgcagcac cagcagcatc tgcagcagca gcagcagctg caacagcagc 5101 agcagaagat gcgccagacc agcttctcgc ccagcgagtt cgatgtggac gatttgatcg 5161 aggaggagga gagcaacgag ctggacatgc agtattgagc tagccaagca gctgcccaag 5221 ccaaaaaaac acatttaaac attaacattt aaatgatgat aattcgatgg aaaagaaaag 5281 caaacagaga gcttttcccc gaatttgttg gcactttgtt taagccattt ttcatcacaa 5341 tacaaacaca cacatttatt tttgtgctcg ccgcatttaa aacacgaact cgaggaaaac 5401 cggacgcagg agcgaaaaca aaaaaatatt taaaaacaaa aaaggatgaa aggagaacat 5461 tttaatccaa agcgaaacaa aattcccagc agcaacacca actaaatagc agcagcaaca 5521 acaaaaccaa gagccaaata tttaacttat aagatttacg tttaaacgac tttgtaactt 5581 aagcgagcac atctgaaaca aactagcaga gttagcatat agcgatgatt tcgaacccga 5641 aggattccca gcagcagcag caacctcaag aacatccaga tggtaaacac acagagagag 5701 cttaccacaa cgtaaaccta agtgtagact taaagaaagc gttatgaata cgtatatgcc 5761 agcgttttac gtatgcaacc aaaaaaaacg aaatgtgcgg attgctttga aggaggagga 5821 gttacaatct attttttttt tactcggttt aaatagttaa tttatgtgag caagaccacc 5881 gcctaagcaa atactgtaaa cccgaatgga tcacatacga cttatatata tcaagatagc 5941 ctttcccttt ttttttgttg tttgaccaag accaagttct tccggagcaa accaaaattc 6001 tcaagaggaa aggagcagag gaggagacca gagaaaacac taggataata ttaactgatt 6061 tatttcatgt attttcacac acccatttaa taattttttt tgttttcgct cgtaagttct 6121 agatgctata agcgttgctt catgtgaagc aaaacaaaca aaaacatttg aatacgatta 6181 taattatatt ataataccaa cacacacaca aacacctata tctggtcact aataaccaat 6241 tataacaaaa ctgaaaatac agcaagtaat tatgttttaa tttatgctag tagtttttgg 6301 gttgcgcaga agaacactca atcgaattag gaataaacac ctggatgata gaagattgtt 6361 gtagggttta tttttaaagc aaccaggtga atgcgcgact tgaaactatt atcagacgat 6421 gtatacctaa tgcatatatt cgtatatata ctataaaata tattaatgtt ttttttttat 6481 gtaattcgca ttattcgcat aatttaatga caaatttaga ggaagcaact ttaagcgtag 6541 atttacaaac ttgttcctgt gttgttaaaa tcagaaagta aagaacttat tttagttaac 6601 gaaacttaac gaagcatacg catacacaaa cactcacaca cacacacaca ttaacacaag 6661 catacgtata catatacata atgttaaggc atccaaacaa agcaacaaac aaacaaacaa 6721 aagagcgaat cataagcaat aatagaatgt tttcgttgta aagaggtaaa aactaaacaa 6781 acaaatactc acgttaaaca taaaaaataa actctagatg ttttggcgtg ccttcacccg 6841 taaataggaa aaacaaaaag cgagatacga tagccaattg tacaatcatt gaaatagtac 6901 ttccagacca gaacgaaccc aaaactcttt gtacatagac ccaaaattga tgttttccaa 6961 ttgaacgtga atattgcctc atcaacttga aatttctttt gtgcttaacg taaaaaccaa 7021 ctttcatatc gttcaaaact tatgcataat caaaatagct aaaacaaaca aaagagatgg 7081 ggaatattta agagacgtaa tatcatatat ttttttttat atttttttta ttttgtattc 7141 tgtctttctt tgataattta tattttgatt tgcataaaca aaatcgagaa atgaaaatgc 7201 ctttagggaa caaataacta gcgcggaaag gaaagagagg ggagataggt ttaggtattg 7261 agaaagcgag agatagagag aaggatattg aacagatcaa ttggagccga aatgtatttt 7321 tttgtgtatg cgaatgtgga tagagatagt agggatagga ataggtctcg agacagaccc 7381 gaacgtgtta caattgcaaa attaactagc cactaagcca cttagcccta agttagctga 7441 gaaacggaat actaaattgt aagccaaaat gcatatagca atctaacaaa aaaaacaaaa 7501 tctaatggaa cctaacgacg agaacctaaa tgtaatctaa atgtacataa aatagttgtt 7561 aacaaatcac aaaaaacaaa cgaaagcaag aaaccaacaa tagagtaaag tcttcacgtc 7621 taactgcctt cgaaaaaaca aaaagaaaga tacagaaaaa gaaaaagaaa ggaaaatcgg 7681 aagtattcta ttctaaacac cgactgtaaa ttgcttgtac tttcaccaca ttttcttttt 7741 tgttaaagca acgacagcaa caacaacaac attaatagaa cagaacagac ggatcgaaag 7801 gcctaaataa gtgtatttgg tttcaagaac tttaaaaaag caaaactaaa tattaatgat 7861 agtatacaga tatatttttg attattatgt atttaatgag aacaatgtaa tgaaaatgat 7921 gcaagtatcg atatcgatat gataactaag agaaaacaaa ttgagaaatc aaatagcata 7981 attctgtttt tgttttgccg taaagactgc attataccaa caattaatta tatacaaaat 8041 aataataata ataatattaa taaatcaata actgataaat ggcgagtaag cgagagcttt 8101 gcattgagca gagaccaaaa cggatgaata aatatatata tatatattaa aacaaccaga 8161 aaaaatattc taaaaacgaa tacaaaaaaa aaaacaaaac aaacaaatat gaaagaaaaa 8221 caaaaaacat ggaaaacaaa accaagaaac atttatttat tagatcctaa gagaagtttc 8281 gctagcggag atcgagtcag gccagagcgg accttaaagg taccccgcat cccagaacga 8341 aaagcaagat gaaattacct taccaaaacg tgggcgagtc tacaaaagtc tataataggg 8401 cgatagggag aatcggaata attagagaac tatcgtatga taaatcaatt accaactaac 8461 tggctaactt atacccacta agatttatag ttccccctaa tccctgaaac tagttctaag 8521 tacataagtt gcaagcgaaa aaaaaactaa aagttagatt tatacacaaa aggatatata 8581 catcatatat atatatatat gtggagaagg aggaaggttt actttggttt tgagattgcc 8641 gcatcttcac atctcaagca atacgtttgt ataccatttg ttattccgaa acgcgacggt 8701 tttcgaaatc gccagttttg ggcgattcga aacatcgaaa cgtttcgtag ctaacacttg 8761 gatatgaata tttaacaaaa agccacacaa acattaacac gacaacaaca acaacactca 8821 tttgatgtat ttagtttaac gtttagcccc tagtttcaag aaaaatcaca cacgaaacaa 8881 gaaaacgcaa aattcgagga acgtgaaaat gcctttcctg aactgcagtc aacactcaaa 8941 tatatggcaa caaaaaaaca acaaaaatga gaaaagaaac aaaccaacca aatgaaagca 9001 aattgtttga ataaaaatca aattacataa a