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LOCUS XM_070218574 9034 bp mRNA linear INV 09-DEC-2024 factor 2 (Trf2), transcript variant X6, mRNA. ACCESSION XM_070218574 VERSION XM_070218574.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9034 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..9034 /gene="Trf2" /note="TATA box binding protein-related factor 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:108070355" CDS 540..5201 /gene="Trf2" /codon_start=1 /product="uncharacterized protein Trf2 isoform X3" /protein_id="XP_070074675.1" /db_xref="GeneID:108070355" /translation="MKENEKIPSNLLEIMGIVSDSGQRTSTSTSDVNEENRVSSFEPG RRLVLNEVSGEFAQERDTENTSSPSPRKEESNEESADSSDKENQYPNHRPSRADDSRS PDSVAETENFKDSDVEIGANSVVLSESQIQHEQDESLVSDPLEEEEEKEHEEEVASGN ESEEKDSPRQNSFEEGTSGDNNSDKDSPSKASNSSSSTPKRPYSGSDNRSSEERTPKR RRQSVSDSEDNRRTLFTDSEDNPIKQRRLTYREQVEAYRRRVDAGSTPGRKSSSSEEE PPPPSPPFRYSELYWEQRRASDADSEPDSAFKYRPNANYHRTSPRNYSDEEEEEEIPE SDTDQNSGGPLGYRVETRSTNYESSETSEDEARRRTVRRVVRRRRRPRNPEHREPEYR GEEQSESSPLPSSESPDRQDNSDENESDEEEKRVIPSRRRTTDDQQPSFSGWGYLTCR QDADYFSEPTDGKIIRKRKSPFEEESSNQSKRRPSEDTESEDSEKEDSEKVDSEKEDS EKEDSDKEDSDKEDSDKEDSDKEDSDKEDSEKEDSEKEDSDKEDSDNGGSDTEKEDRN TDKRDSDTDNDSNTEDPQDPRDSQDSASDNEQVPDSTGEPDQDNEQFPDSTEEPDQDN EQFPDSTEEPDQDKELGQTAAWTITPDDPKGIQDFQDFVLKQVQLINEIIEVGHQVFQ LGSIVCHGDFTFFQTLYERKVPIEEVVELVYRGILGVKEELRVALIARQDLSEPHSKD IIRPGDKLAYLRLDLFNKFVSKVNQSERIVDQRLLELQEVRKQQGLLEQKQRVLERVR QQREQHRLQQLQVEREREERQEEEQRRLELERHLERWKEDFNRQLRLQREQEEIKLRQ EEENRKREEERRSNYDSYYCQLPKHKHREQMQNEMVSIPVANLNGGLKAASSGSGGVV GVVTSSGVVSSAVLANAPRVYLTPSSTFMANRGQVAAGAGATGKIAGGSNVTSSVGTS SATAGTVRYFSQFSKMQTAGGPSLQRKLANGDTIVLANGNKSLFLSSSGGVGGDKATN GNSLLTAKTELLEEEVMQPGTVIVDCDDDDDEDENENEDEDDEDGEDKDEKNNSHTAK SSGVQQEQPLALTTATNNAAASDDEPELDIVINNVVCSFSVGCHLKLREIALQGSNVE YRRENGMVTMKLRHPYTTASIWSSGRITCTGATSEAMAKVAARRYARTLGKLGFPTRF LNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLKIFS TGSVTVTAASVSHVESAIQHIYPLVFEFRKQRSLEELQHLRQKQHKQAGGDPSELEKL IVAENKAAGLDDIFLNTTAAHTKPSPNERTPATSGILTSTIDSMQRLKQIENYSHMMK LTQEERRHIPFQGEKVNPAAASTSAAAAASSGDNICANARRRATECWATKLQYKRPRY NDPGTTGTVNASSTAASSSAASSSSSQAAPHLRTNPLKTAALANARMRGAKMPTVLKP GTRLAPIGGGYLQHQQHLQQQQQLQQQQQKMRQTSFSPSEFDVDDLIEEEESNELDMQ Y" misc_feature <1893..2456 /gene="Trf2" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 3885..4406 /gene="Trf2" /note="TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the...; Region: TLF; cd04517" /db_xref="CDD:239953" misc_feature order(3900..3905,3909..3911,3987..3992,4002..4004, 4008..4010,4029..4031,4035..4037,4047..4049,4053..4055, 4059..4061,4065..4067,4155..4157,4170..4172,4176..4178, 4263..4268,4281..4283,4320..4322,4326..4328,4332..4334, 4344..4346) /gene="Trf2" /note="putative DNA interaction surface [nucleotide binding]; other site" /db_xref="CDD:239953" misc_feature order(3945..3947,3966..3974,3978..3980,3990..3992, 4008..4010,4014..4016) /gene="Trf2" /note="putative TFIIA interaction surface [polypeptide binding]; other site" /db_xref="CDD:239953" misc_feature order(4206..4211,4245..4259,4266..4268,4281..4283) /gene="Trf2" /note="putative TFIIB interaction surface [polypeptide binding]; other site" /db_xref="CDD:239953" polyA_site 9034 /gene="Trf2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agccagcaag agagagggag agcagcagca gcagcgcggc ggcggccaca gcaacaaagc 61 cacaaaagag agcgacggcg agagagacag agagagaggg ggagagaact agacgacgcg 121 acgacctact acaaaaaaag gctctccaag gaagaaagga taaaagaaga aacaaccatt 181 caaatattta aggactttta agagactgca aaggaacaac aaaaactaca agctaattta 241 aataggagaa agaacggaag actagacata atcgtaatac agagtagttt agcattaggg 301 aaccgacaac aacaaaaacc actgcaaaca ctaattctaa ttcaaaatta cactaaaaga 361 gtattttttc agccctaaga gcaaacacac acacacatac acaccacaca cacaaacgaa 421 agaagaagaa tttgtagaag aatcactttt agccttatat acaactacaa agaaaaaaaa 481 aagaacgcaa gttagtatta agttaagatg ctagaaagag aggacgtagc aagaatccta 541 tgaaagaaaa cgagaagatt ccaagtaatt tgcttgaaat catggggatt gtcagcgatt 601 ccgggcaaag gacttcgact tcgacttctg acgtgaatga agaaaacagg gtatcttcat 661 tcgagccagg gcgtcgtctt gtcttaaacg aagtaagcgg agaattcgct caagaaagag 721 acaccgagaa cacaagttcc ccgtcgccac gcaaggaaga aagcaacgaa gaatcagcag 781 attcttcgga taaggagaat caatacccga atcatcgtcc ttcaagggca gacgatagta 841 gatctccgga ttctgtcgcg gaaactgaaa actttaagga ttctgacgtt gaaatcggcg 901 caaactcggt agtactttct gaatcccaaa ttcagcacga acaggacgaa tcattagtat 961 ctgatcctct cgaagaagaa gaagaaaaag aacacgaaga agaggtcgct agcggtaacg 1021 agtcggaaga aaaggatagt ccgaggcaaa atagcttcga ggaaggaact tcaggcgata 1081 ataatagcga taaagatagt ccgtcgaaag cttcaaattc ttcaagttcg actccaaagc 1141 ggccttattc gggttcagac aatcgaagct ccgaagaaag gacccccaag aggcgacgtc 1201 agtcagtttc agatagcgag gacaaccgcc gaactttatt tactgactcg gaagataacc 1261 ccattaaaca gaggagatta acttaccgtg aacaagtaga agcctataga cgtagagttg 1321 acgccggaag tacaccagga cggaagagtt catcttcaga agaagaaccg ccgccgcctt 1381 cgccaccatt tagatattcg gaattatatt gggagcagcg gcgtgcttca gacgccgact 1441 ctgaacctga ttccgccttc aaatatagac ctaatgcgaa ttatcaccgt acatcaccgc 1501 gaaattatag tgacgaagag gaagaggagg agatcccaga aagcgatacc gatcagaatt 1561 caggaggacc actaggctat agggtagaaa cccgtagtac caattacgag tcaagcgaaa 1621 cgtcagaaga cgaggctcgc aggaggaccg tgaggcgtgt agttcgccgg cgtcgtagac 1681 cacgcaatcc cgaacatcgc gaacctgagt atcgcgggga agagcaaagt gagagttcgc 1741 cactaccgtc cagtgaatcc cccgatcgcc aagacaacag cgacgaaaac gagagcgacg 1801 aagaggagaa gcgggttata ccttcaaggc gtcgcactac cgacgatcag cagcccagct 1861 tctcaggctg gggatatcta acgtgtcgtc aggacgcaga ctatttctcg gaacccaccg 1921 acgggaagat catcaggaag aggaagtcgc catttgagga agaatcctcg aatcaatcaa 1981 agagacgacc atcagaagac accgagagcg aagactctga gaaggaagac tctgagaagg 2041 tagattctga gaaggaagat tctgagaagg aagattctga taaagaagat tctgataaag 2101 aagattctga taaagaagat tctgataaag aagattctga taaagaagat tctgagaaag 2161 aagattctga gaaagaagat tctgataaag aagattcgga caacggaggt tctgataccg 2221 agaaggaaga tcgaaatacc gataaacgcg attccgatac cgataacgat tccaatactg 2281 aagatccgca agatcccaga gattctcaag attcggcttc tgacaacgag caggttcccg 2341 attctactgg ggagcccgac caagacaacg agcagtttcc cgattctacc gaggagcccg 2401 accaagacaa cgagcagttt cccgattcta ccgaggagcc cgaccaagac aaggaactag 2461 gacagactgc cgcttggacc atcacacccg atgatcccaa gggcattcaa gacttccaag 2521 acttcgtcct aaagcaggtg caactgatca atgaaatcat cgaggtcggc catcaagtat 2581 tccaactggg atcaatagtt tgccatggtg actttacgtt ctttcaaaca ctttacgagc 2641 ggaaagttcc aatagaagag gtcgttgagc tagtctaccg gggcattctc ggtgtcaagg 2701 aggagctcag ggtggcattg atagcccgcc aagatctaag cgagccacat tcgaaagaca 2761 tcatcaggcc aggagataaa ctagcctatt taagattgga tttgttcaat aaatttgtat 2821 caaaagtcaa tcagtccgag aggatcgtgg atcaacgcct tcttgagctg caggaggtac 2881 ggaaacagca gggactactg gagcagaagc agcgcgtctt ggagagagtg cgccagcagc 2941 gggaacagca ccgcctgcag cagcttcagg tggagcggga gcgtgaggag cgccaggagg 3001 aggagcagcg gcgcctggag ctcgaacgcc acttggagcg ttggaaggag gacttcaatc 3061 gccagctgcg actgcagcgc gagcaggagg agatcaagtt gaggcaagag gaggagaaca 3121 ggaagcgaga agaggagcgc aggagcaact acgacagcta ctactgccaa ctgccgaagc 3181 acaagcaccg cgagcagatg caaaacgaaa tggtcagcat tccagtggct aatttgaacg 3241 gtggcctcaa ggcggccagc agtggatccg gtggtgtggt cggtgtggtc acctcctccg 3301 gcgttgtctc ctcggccgtg ctggccaatg cgccgcgtgt ctatctgacg ccctcctcca 3361 cattcatggc caatcgtggt caggtggcgg cgggggcggg ggccaccgga aagattgcag 3421 gagggagcaa cgtaacttca tccgtcggca catcttcggc caccgccggc actgtacgct 3481 acttttcgca attcagcaaa atgcaaaccg ccggcggacc cagtttgcag cgtaaactgg 3541 ccaacggcga caccattgtg ctggccaacg gcaacaagag tctgttcctc agcagcagtg 3601 gaggcgttgg aggcgacaag gccaccaatg gcaatagttt gctaacggcc aaaacggagc 3661 ttctcgagga ggaagtcatg cagccgggaa ctgtgattgt cgactgcgac gacgacgacg 3721 acgaggatga gaatgagaat gaggatgagg acgatgaaga tggggaggat aaggatgaga 3781 agaacaacag ccacactgcc aaatccagtg gggttcaaca ggagcagccg ttggctttga 3841 ccaccgcaac caacaatgca gccgcctccg atgatgaacc cgaactggat attgttatta 3901 ataatgtggt atgctccttc agcgtgggct gccacctcaa gctgcgcgaa atcgctctcc 3961 agggctcaaa tgtcgagtac cgtcgtgaga acggtatggt gacaatgaag ctccgccatc 4021 cgtacacgac ggcatccatt tggtcctcgg gcaggatcac gtgcactgga gccacctccg 4081 aggcaatggc caaggttgcg gctcgccgct atgcgaggac cctgggcaag ctgggatttc 4141 ccacccgctt tctcaacttc cggatcgtga atgttctggg cacctgcagc atgccctggg 4201 ccatcaagat cgtcaatttc tcggagcgcc atcgcgagaa tgcgagctac gagcccgagc 4261 tgcacccggg cgtgacctac aagatgcgcg atcccgatcc caaggccacg ctcaagatct 4321 tctccaccgg cagcgtgacc gtgacggcgg ccagcgttag ccacgtggag tcggccattc 4381 agcacattta cccgctcgtc tttgagttcc gcaagcagcg ttcgctggag gagctgcagc 4441 atctgcgcca gaagcagcac aagcaagcgg gcggtgatcc cagcgaactg gagaagctga 4501 tcgttgcgga gaacaaggcg gccggactgg atgatatctt cctcaacaca acggcggcgc 4561 acacgaagcc ctcgccgaat gagcgtacgc cggccacatc gggcatcctc acgagcacca 4621 tcgatagcat gcagcgtttg aagcagatcg agaattattc tcacatgatg aagctgacgc 4681 aggaggagcg ccgacacata cccttccagg gtgagaaggt taacccggcg gcggcttcta 4741 cttcggcggc agctgctgct tcgtcggggg ataatatctg tgccaatgcc cgtcgccggg 4801 ccaccgagtg ctgggccacc aagctgcagt acaagcgtcc gcgttacaat gatcccggca 4861 ccacgggcac cgtcaatgcc tcgtcaacag ccgcctcctc ctcagctgcc tcgtcatcct 4921 cctcacaggc agcgccacac ctgcgtacta atcctctcaa gacggccgct ttggccaatg 4981 cccgcatgcg tggcgccaaa atgccaacgg tgctcaagcc gggcacgcgt ctagcgccca 5041 tcggcggtgg ctatctgcag caccagcagc atctgcagca gcagcagcag ctgcaacagc 5101 agcagcagaa gatgcgccag accagcttct cgcccagcga gttcgatgtg gacgatttga 5161 tcgaggagga ggagagcaac gagctggaca tgcagtattg agctagccaa gcagctgccc 5221 aagccaaaaa aacacattta aacattaaca tttaaatgat gataattcga tggaaaagaa 5281 aagcaaacag agagcttttc cccgaatttg ttggcacttt gtttaagcca tttttcatca 5341 caatacaaac acacacattt atttttgtgc tcgccgcatt taaaacacga actcgaggaa 5401 aaccggacgc aggagcgaaa acaaaaaaat atttaaaaac aaaaaaggat gaaaggagaa 5461 cattttaatc caaagcgaaa caaaattccc agcagcaaca ccaactaaat agcagcagca 5521 acaacaaaac caagagccaa atatttaact tataagattt acgtttaaac gactttgtaa 5581 cttaagcgag cacatctgaa acaaactagc agagttagca tatagcgatg atttcgaacc 5641 cgaaggattc ccagcagcag cagcaacctc aagaacatcc agatggtaaa cacacagaga 5701 gagcttacca caacgtaaac ctaagtgtag acttaaagaa agcgttatga atacgtatat 5761 gccagcgttt tacgtatgca accaaaaaaa acgaaatgtg cggattgctt tgaaggagga 5821 ggagttacaa tctatttttt ttttactcgg tttaaatagt taatttatgt gagcaagacc 5881 accgcctaag caaatactgt aaacccgaat ggatcacata cgacttatat atatcaagat 5941 agcctttccc tttttttttg ttgtttgacc aagaccaagt tcttccggag caaaccaaaa 6001 ttctcaagag gaaaggagca gaggaggaga ccagagaaaa cactaggata atattaactg 6061 atttatttca tgtattttca cacacccatt taataatttt ttttgttttc gctcgtaagt 6121 tctagatgct ataagcgttg cttcatgtga agcaaaacaa acaaaaacat ttgaatacga 6181 ttataattat attataatac caacacacac acaaacacct atatctggtc actaataacc 6241 aattataaca aaactgaaaa tacagcaagt aattatgttt taatttatgc tagtagtttt 6301 tgggttgcgc agaagaacac tcaatcgaat taggaataaa cacctggatg atagaagatt 6361 gttgtagggt ttatttttaa agcaaccagg tgaatgcgcg acttgaaact attatcagac 6421 gatgtatacc taatgcatat attcgtatat atactataaa atatattaat gttttttttt 6481 tatgtaattc gcattattcg cataatttaa tgacaaattt agaggaagca actttaagcg 6541 tagatttaca aacttgttcc tgtgttgtta aaatcagaaa gtaaagaact tattttagtt 6601 aacgaaactt aacgaagcat acgcatacac aaacactcac acacacacac acattaacac 6661 aagcatacgt atacatatac ataatgttaa ggcatccaaa caaagcaaca aacaaacaaa 6721 caaaagagcg aatcataagc aataatagaa tgttttcgtt gtaaagaggt aaaaactaaa 6781 caaacaaata ctcacgttaa acataaaaaa taaactctag atgttttggc gtgccttcac 6841 ccgtaaatag gaaaaacaaa aagcgagata cgatagccaa ttgtacaatc attgaaatag 6901 tacttccaga ccagaacgaa cccaaaactc tttgtacata gacccaaaat tgatgttttc 6961 caattgaacg tgaatattgc ctcatcaact tgaaatttct tttgtgctta acgtaaaaac 7021 caactttcat atcgttcaaa acttatgcat aatcaaaata gctaaaacaa acaaaagaga 7081 tggggaatat ttaagagacg taatatcata tatttttttt tatatttttt ttattttgta 7141 ttctgtcttt ctttgataat ttatattttg atttgcataa acaaaatcga gaaatgaaaa 7201 tgcctttagg gaacaaataa ctagcgcgga aaggaaagag aggggagata ggtttaggta 7261 ttgagaaagc gagagataga gagaaggata ttgaacagat caattggagc cgaaatgtat 7321 ttttttgtgt atgcgaatgt ggatagagat agtagggata ggaataggtc tcgagacaga 7381 cccgaacgtg ttacaattgc aaaattaact agccactaag ccacttagcc ctaagttagc 7441 tgagaaacgg aatactaaat tgtaagccaa aatgcatata gcaatctaac aaaaaaaaca 7501 aaatctaatg gaacctaacg acgagaacct aaatgtaatc taaatgtaca taaaatagtt 7561 gttaacaaat cacaaaaaac aaacgaaagc aagaaaccaa caatagagta aagtcttcac 7621 gtctaactgc cttcgaaaaa acaaaaagaa agatacagaa aaagaaaaag aaaggaaaat 7681 cggaagtatt ctattctaaa caccgactgt aaattgcttg tactttcacc acattttctt 7741 ttttgttaaa gcaacgacag caacaacaac aacattaata gaacagaaca gacggatcga 7801 aaggcctaaa taagtgtatt tggtttcaag aactttaaaa aagcaaaact aaatattaat 7861 gatagtatac agatatattt ttgattatta tgtatttaat gagaacaatg taatgaaaat 7921 gatgcaagta tcgatatcga tatgataact aagagaaaac aaattgagaa atcaaatagc 7981 ataattctgt ttttgttttg ccgtaaagac tgcattatac caacaattaa ttatatacaa 8041 aataataata ataataatat taataaatca ataactgata aatggcgagt aagcgagagc 8101 tttgcattga gcagagacca aaacggatga ataaatatat atatatatat taaaacaacc 8161 agaaaaaata ttctaaaaac gaatacaaaa aaaaaaacaa aacaaacaaa tatgaaagaa 8221 aaacaaaaaa catggaaaac aaaaccaaga aacatttatt tattagatcc taagagaagt 8281 ttcgctagcg gagatcgagt caggccagag cggaccttaa aggtaccccg catcccagaa 8341 cgaaaagcaa gatgaaatta ccttaccaaa acgtgggcga gtctacaaaa gtctataata 8401 gggcgatagg gagaatcgga ataattagag aactatcgta tgataaatca attaccaact 8461 aactggctaa cttataccca ctaagattta tagttccccc taatccctga aactagttct 8521 aagtacataa gttgcaagcg aaaaaaaaac taaaagttag atttatacac aaaaggatat 8581 atacatcata tatatatata tatgtggaga aggaggaagg tttactttgg ttttgagatt 8641 gccgcatctt cacatctcaa gcaatacgtt tgtataccat ttgttattcc gaaacgcgac 8701 ggttttcgaa atcgccagtt ttgggcgatt cgaaacatcg aaacgtttcg tagctaacac 8761 ttggatatga atatttaaca aaaagccaca caaacattaa cacgacaaca acaacaacac 8821 tcatttgatg tatttagttt aacgtttagc ccctagtttc aagaaaaatc acacacgaaa 8881 caagaaaacg caaaattcga ggaacgtgaa aatgcctttc ctgaactgca gtcaacactc 8941 aaatatatgg caacaaaaaa acaacaaaaa tgagaaaaga aacaaaccaa ccaaatgaaa 9001 gcaaattgtt tgaataaaaa tcaaattaca taaa