Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_070218340 8533 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_070218340 VERSION XM_070218340.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8533 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8533 /gene="ct" /note="homeobox protein, cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108060310" CDS 1125..7649 /gene="ct" /codon_start=1 /product="homeobox protein cut isoform X2" /protein_id="XP_070074441.1" /db_xref="GeneID:108060310" /translation="MQPTLPQAAGTADMDLTAVQSINDWFFKKEQIYLLAQFWQQRAT LAEKEVNTLKEQLSTGNPENSDNSDTATVAAATNDSEEDQQQQQQQQQQQSDSDKLLN SSIVAAAITLQQQNGSNLLANTNTPSPSPPLLSAEQQQQLQSSLQQSGGGACLNPKLF FNHAQQMMMMEAAAAAAAAALQQQQQQQSPLHSPATEVAIPAEQPAATTGAATAAAAT PIASGNIKSSSNINHSNNTSNNNSHQEQEDQELEEDEDEEEEDEDEDDEEENASMQSN ADDMELDAQQETRTEPSATTQQQDLADLEEQNKDAGEASLNVSNNHTTDSNNSCSRKN NNGGGNESEQHVANSAEDDDCANNNTNTSNNNNTSSTTATSNTNNNNNNNNSSSGNSE KRKKKNNNNNNGQPAVLLAAKDKEIKALLDELQRLRALEQTHLVQIQRLEEHLEVKRQ HIMRLEARLDKQQINEALAEATALAAAAATNNNNNSQSSDNNKQSNKAGEAATPLDAS SSVISIGDLPEATKTSAAVPSAAAAEDEDEDEDQAMLVDSEEAEEKPEEHQRGDDDEE EEEEAEDREAVNATNTTTTTDSNELKIKKEQHPLDLNVLSPNSALATAAAAAAAAACA NDPNKFQALLIERTKALAAEALKNGASDAISEDAHHHQQQHHQQQQQQHHHQQHHQQQ QQHHQQQQQHHHHHHLQNSGSNSNPATNSDLNHHGHHLHHLHHLHHESSSNSSTPSVT AASGNGGSNNAGNQATQATAQLAASLASTLNGAQKSLLQEDSNGLATAAAMAAHAHLG PVSGFLPGLPAFQFAAAQVAAGGGDGRVGHYRFADSELQLPPGASMAGRLGESLIPKG DPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTV SELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVMLLKSLIPKKDSGLPQYAGRGAGG AGGDDSMSEDRIAHILSEASSLMKQTSVAHREHRELQQERRSHGEDSHSNEDSKSPPQ SCTSPFFKVEQQLKQQQHQQQQHLTPEQAAAAQQREREREQREREREQQQRLRHEDLA QDKMARLYQELIARTPRETAFPSFLFSPSLFGGAAGMPGAAGNAFPAMADENMRHVFE REIAKLQQHQQQQQQQQQAAAAQFPNFSSLMALQQQVLNGAQDLSLAAAAAASKDIKL NGQRSSLEHSAGSSSSCSKDGEREDGYRKSEGGGTPAPPAPPAGAAPLPSGGAPTGAP GGATSGNSAAPSPLSNSILPPALSSQGEEFAATASPLQRMASITNSLITQPPVTPHHS TPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGS VSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSG SPQMPQGLASKMQAVGSLPMQKMMSELKLQEPGAAQAQHLMQQMQAAAMSAAMQQQQQ QQVAQQHHQQQHLVAQQQQQHLAAQQQQQQHLVAQQQQQQQQHAAAAALHHQSMLLTS PGLPPQHAISLPPSAGNPSSNPNPSSNPGEKKPMLMPVHGTNAMRSLHQHMSPTVYEM AALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIK GREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFY TSSPGPGSVGSGVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGL ATRTITNWFHNHRMRLKQQVPHGPAGQDNPIPSRESTSATPFDPVQFRILLQQRLLEL HKERMGMSGAPIPYPPYFAAAAILGRSLAGIPGAAAAAGAAAAAAAVGAATGDELQAL NQAFKEQMSGLDLSMPTLKRERSDDYQELDLELEGGSGHNLSDNESEMEGGQEEDKTT SDYEKALHKSALAAAAAYMSNAVRSSRRKPAAPQWVNPAGAVTNPSAVVAAVAAAAAA AAAADNERIINGVCVMQGSGSSSSVEPTDSGATNEEAEEHEHAQLEIDQRFMEPEVHI KQEEDDDEEEQPTATAENSGEENSELKLKVVNEEKLRMVRVRRLSSNGGGSSEEMPAP LAPPPSAGAATSSSSGAVESTSCSSSSTPAVTTAAAAASWNY" misc_feature 3759..3968 /gene="ct" /note="CUT domain; Region: CUT; pfam02376" /db_xref="CDD:460543" misc_feature 5151..5378 /gene="ct" /note="CUT domain; Region: CUT; pfam02376" /db_xref="CDD:460543" misc_feature 5970..6197 /gene="ct" /note="CUT domain; Region: CUT; pfam02376" /db_xref="CDD:460543" misc_feature 6360..6530 /gene="ct" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" polyA_site 8533 /gene="ct" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcgtgactgg caacgtcgcc tggctaacgt cgccccgttc gaaagaaatc gagactttcg 61 gaagaagact tgggactcgg actccgattc tccactgccc cgctagaagg cagtgctttc 121 tgcagtcgca ttcttctgct gcctcttctt cttcttcgta gccgcggcgc gggtgtgtga 181 gtgcgtgtgc cagcccccct ctctctctcg ctcgttcgat tcgatctacc tgctgctgtg 241 tgtgtacgcg cgtgtgtgtg tgtgtgtgtg cgggcagaag aatccaaacc acccactact 301 ccacacaatc acaacaaaat agaaatgcaa gtgcattaat tacctgtaaa tcgatgaaga 361 agaagaaacg gtaaagagat caaagccaaa aaaaccaaac aaaaacaaaa cgaagcacac 421 aaaaggacta gaaagcgaaa ctgtttatta tttttttcaa gtgtatttct gttcgctgac 481 ataaaaatat gtgcgcgtgt atgagtgtca agtgtaagca acaacaagag cagcaacaac 541 aagagccaca gcaacaacaa cgacagcaaa catgtgcaaa ataagccaaa gccagcaagc 601 aacaacaaca taataataat aataataatg gcttgaaaaa tcataataaa aaatcaagca 661 cacacaacaa ccaaaacaac aacaacatca aaccctcacc attcgccaac aactacaact 721 acaacaatcc ccccacacaa ctacaacaac aagccccttt tctaaaaaat aaataccaga 781 atttatttga ttcgaaactt gaaagtgaaa ataattaaat taataaaata ttaacacaca 841 gaaattggct tatttatgaa tttttttgag cacgtaactg aaaacataga atacttaagg 901 tgtaaatgtg atgactaaaa cctaaaaaca tagaaatcaa tataataaca actaacaaaa 961 acaaagaaaa gaacctatat aatgccaggc cttattagcc ccaaattggt agaatccaaa 1021 aactgaagag cgaaaaaaaa aacaacacaa ctaaaaaccc gaaaaccaaa accgtggaaa 1081 accaaactga ctgagcaatt gaattaaccc cagaaagccc acgaatgcag ccaacattgc 1141 cacaagccgc tgggacagcc gatatggatc tgacggctgt tcaatcaatc aacgattggt 1201 ttttcaaaaa ggagcaaatt tatttattgg cacagttttg gcaacagcgc gctaccctgg 1261 ccgagaagga ggtgaacaca ctcaaagagc agctatccac aggcaatccc gagaacagcg 1321 acaacagcga cacagcaaca gttgcagcag caacaaacga cagtgaggag gatcaacagc 1381 agcagcagca gcagcaacaa cagcaaagcg acagcgacaa gctgctgaac agctccattg 1441 ttgcagcggc cataacgctg caacagcaga acggcagcaa tctgctggcg aacacaaata 1501 cgccgtcgcc ctcgccgccg ttgctcagcg ccgagcagca gcagcagttg cagagcagtt 1561 tgcaacagag cggcggtggc gcctgcctca atccgaagct cttcttcaat cacgcccagc 1621 agatgatgat gatggaggcg gcagctgcgg cagcagcggc ggcactgcaa cagcagcagc 1681 aacagcaatc gccgttgcat tcgccggcga ctgaggtggc aattcccgca gaacagccag 1741 cagcaacaac gggagcggct acagcagcag cagcaacacc gattgccagt ggcaacatca 1801 agagcagcag caacatcaat cacagcaaca acaccagcaa caacaacagt caccaggagc 1861 aggaggacca ggagctggaa gaagatgagg atgaggagga ggaggatgag gacgaggacg 1921 atgaggagga gaatgcctcg atgcaatcga atgccgatga tatggagctg gatgcacagc 1981 aagaaaccag aactgagcca agtgcaacaa cgcaacagca ggatcttgcc gatcttgagg 2041 agcagaacaa ggatgcgggg gaggctagtt taaatgttag caataatcac acaaccgata 2101 gcaataatag ttgtagtcga aagaacaaca atggtggcgg caatgagagt gagcaacatg 2161 ttgccaattc ggcggaggac gatgattgcg ccaacaacaa tacaaacacc agcaataaca 2221 acaataccag cagcaccacc gccaccagca acaccaacaa caacaataac aacaacaaca 2281 gcagcagtgg caacagcgag aagcgcaaga agaagaacaa taacaacaac aatggccagc 2341 ctgctgttct attagctgcc aaagataaag agattaaagc acttctggac gaactgcaac 2401 gcctgagggc gctggagcag acgcatctgg tgcaaatcca gcgactggag gagcatttgg 2461 aggtcaagcg ccagcacata atgcgattgg aggcgcgtct cgataagcag cagatcaatg 2521 aggctctcgc cgaggcgacc gctttggcgg cagcagctgc caccaataac aacaataata 2581 gccagagcag cgacaacaat aagcagagca acaaggcagg agaagccgcc acaccgctgg 2641 atgcgtcatc atccgtcatc agcattggcg atctgccgga ggccacaaag acttcagcag 2701 cagttccttc tgccgccgcc gctgaggatg aggatgagga cgaggatcag gccatgctgg 2761 ttgactccga ggaggcggag gagaagccag aggagcacca gcggggtgac gacgacgagg 2821 aggaggagga ggaggccgag gatcgggagg cggtcaatgc caccaacacc accaccacca 2881 ccgatagcaa cgagctcaaa atcaaaaagg aacagcatcc gctggatctg aatgtgctca 2941 gtccgaattc agctttggcc actgcagctg cggccgccgc tgccgccgcc tgcgccaacg 3001 accccaacaa attccaggcg ctgctcatcg agcggaccaa agccctggcc gccgaggcgc 3061 tcaagaatgg cgccagtgat gccatcagcg aagatgccca ccaccaccag cagcaacatc 3121 accagcaaca gcagcagcaa caccaccacc agcaacatca ccagcagcag cagcaacacc 3181 accagcaaca gcagcaacac caccatcatc atcacctgca aaatagcggc agcaacagca 3241 atccagcgac caacagcgac ttgaatcatc atggccatca cttgcatcat ttgcatcact 3301 tgcatcacga atccagttcg aattcgagta caccttcggt tacggcggcg tctgggaacg 3361 gtggtagcaa caatgctggc aaccaggcca cccaggccac cgctcaactg gccgccagtt 3421 tggccagcac actgaacgga gcacagaaat cgctgctgca ggaggatagc aatggactgg 3481 ccaccgccgc cgcaatggcc gctcatgccc atttgggtcc agtatccggt tttctgcccg 3541 gcctaccggc ctttcaattt gccgccgccc aagtggccgc cggtggtggc gatggacgtg 3601 tgggtcacta tcgtttcgcc gattcggaac tgcaattgcc tcccggagcc tcgatggccg 3661 gccgtttggg tgaatcactg atacccaagg gcgatcccat ggaggccaag ctgcaggaga 3721 tgctgcgcta caacatggat aagtacgcca atcaggcgct ggataccctg cacatttcgc 3781 gtcgcgttcg ggaactcctg tcggtgcaca acattggcca gcggctgttt gccaaataca 3841 tattgggcct gtcgcaaggc accgtctcgg agctgttgag caaacccaag ccatgggaca 3901 agctgacgga gaagggacgc gatagctacc gcaaaatgca cgcctgggcc tgtgacgata 3961 atgccgtcat gctgctcaaa tcgctgatac ccaagaaaga ttctggcctg ccgcagtatg 4021 cgggtcgtgg agccggcggc gctggcggcg atgattccat gtccgaggac cggattgccc 4081 acatcctcag cgaggcctcg tcgctgatga agcagacgag cgtggcccat cgggagcatc 4141 gggagctcca gcaggagcgt cgcagtcacg gcgaggattc gcacagcaac gaggacagca 4201 agtcgccgcc gcagagctgc acctcgccct tcttcaaggt cgagcagcag ctgaagcagc 4261 agcagcacca gcagcagcag catctcactc ccgaacaggc agcggccgcc cagcagaggg 4321 aaagggagag ggagcagcgg gagagggagc gagagcagca gcaacgactg aggcacgagg 4381 acttggccca ggacaagatg gcccggctct accaggagct aattgcacgc actcccaggg 4441 agacggcctt tccaagcttc ctcttctcac cctcgctgtt cggaggagcc gccggcatgc 4501 cgggagcggc tggcaatgcc tttcccgcca tggccgatga gaatatgcgt catgtcttcg 4561 agcgcgagat cgccaagctg cagcagcacc agcagcagca gcagcaacag caacaggcgg 4621 ccgccgccca gttccccaac ttctcgagcc tgatggccct gcagcagcag gtgctcaatg 4681 gcgcccagga tctctcgctg gccgccgcgg ccgccgcctc caaggacatc aagctgaatg 4741 gccagcgatc ctcgttggag cacagcgccg gcagcagtag cagctgctcc aaggatggcg 4801 aacgggagga tggctaccgg aagtccgagg gaggcggtac accagctccc ccagcaccgc 4861 cagcgggagc agctccactg cccagcggag gagcaccaac tggagcacca ggtggagcaa 4921 ccagcggcaa ctcggcggcg cccagtccgc tgagtaactc catcttaccc ccagctttaa 4981 gcagccaagg agaggagttt gcggccacgg ccagtccgct gcagcgaatg gcctcgataa 5041 ccaactcgct gatcacccag ccgccggtga cgccgcatca cagtactcca caaagaccca 5101 ccaaggcggt cctgccgccc atcacccagc agcagttcga tatgttcaac aatctcaaca 5161 cggaggatat cgtgagaagg gtcaaggagg cgctctcgca gtactccatt tcccagcgtt 5221 tgtttggtga atctgtgctg ggattatcgc agggttccgt ctctgatttg ctggcgcggc 5281 ccaaaccctg gcacatgctc actcaaaagg gtagggagcc cttcatccgc atgaagatgt 5341 tcctggagga cgagaatgcg gtgcacaagc tggtggccag tcagtacaag attgcccccg 5401 agaaactgat gcgcacgggc agttacagcg gcagtccgca aatgccgcag ggattggcca 5461 gcaaaatgca ggcggtgggc tccctgccca tgcagaagat gatgagcgag ctgaagttgc 5521 aggaaccggg agctgcccaa gcgcagcatc tcatgcaaca gatgcaggcg gcggccatgt 5581 cggcggccat gcagcagcag cagcagcagc aggtggctca gcagcatcac cagcaacaac 5641 atctcgttgc ccagcagcag cagcaacatc tggctgctca gcagcaacag cagcaacatc 5701 tcgtcgccca gcagcagcag caacagcagc aacatgccgc ggccgctgca ctgcatcacc 5761 agagcatgct gctcacctcg cccggcctgc cgccccagca tgccatcagc ctgcctccgt 5821 cggctggcaa tccgagttcc aatcccaatc cgagcagcaa tcccggcgag aagaagccca 5881 tgctgatgcc cgtgcatggc acgaatgcca tgaggagtct gcaccagcac atgtcgccca 5941 cggtctacga gatggctgcc ttgacccagg atctggatac gcatgatatt accaccaaga 6001 tcaaggaggc cctgttggcc aataacattg gccagaagat attcggtgag gctgtgctgg 6061 gactctcgca gggatccgtc tccgagctgc taagcaaacc gaagccgtgg catatgttgt 6121 ccatcaaggg aagggaaccc ttcattcgga tgcagctgtg gctgagcgat gccaacaatg 6181 tggagcgatt gcagctgctg aaaaatgagc ggcgggaggc gagcaagcga aggaggagca 6241 cgggaccgaa tcagcaggac aacagcagcg atacctcgag caatgatacc aatgatttct 6301 ataccagcag tccgggaccg ggttcagtgg gttccggtgt gggtggagca ccgccgagca 6361 aaaagcagcg tgtgctcttc tccgaggagc aaaaggaggc tctccgattg gcctttgccc 6421 tggatcccta tcccaatgtg ggcaccattg aatttctggc caatgaattg ggtttggcca 6481 ctcgaaccat caccaattgg ttccacaatc atcgcatgcg cttgaagcaa caggttcccc 6541 atggacccgc cggccaggat aatccgatac cgagtcgcga gagcaccagt gccacgccct 6601 tcgatcccgt ccagttccgc atcctgctgc agcagcgtct gctggagctg cacaaggagc 6661 ggatgggcat gagtggtgca ccgattccgt atcccccgta ctttgcagct gctgccattt 6721 tgggacgcag cttggcgggg attcctggag cagcggcggc ggcaggagca gctgcagcag 6781 cggccgccgt gggagcagcc accggtgatg aactgcaggc cctgaatcag gccttcaagg 6841 agcagatgag cggattggat ttatccatgc ccacgttgaa gcgcgagcgc agcgatgact 6901 atcaggaact ggacttggag ctagagggag gttcgggtca caacctcagc gacaatgagt 6961 ccgaaatgga gggtggtcag gaggaggata agacaaccag cgattacgag aaggctttgc 7021 acaagtccgc tttagcagcc gccgccgcct acatgtcgaa tgcggtgcgc agttcgcgac 7081 gcaagccggc tgccccccag tgggtcaatc ccgccggtgc agtgaccaat cccagtgccg 7141 tcgtggcagc cgtggcagcg gcagcagcag cagccgcagc agcggacaac gagcgcatca 7201 tcaacggggt gtgcgtgatg cagggatcgg gatcctcctc ctccgtcgaa ccaacggata 7261 gtggggccac aaacgaggag gcggaggagc atgagcatgc ccagctggag attgatcagc 7321 ggttcatgga gccggaggtg cacatcaagc aggaggagga cgacgacgag gaggagcaac 7381 caacggcgac agcggagaac agcggcgagg agaacagcga gctgaagctg aaagtggtca 7441 acgaggagaa gctgcgaatg gtgcgggtgc gacgactgag cagcaatggc ggtggctcct 7501 ccgaggagat gcccgccccg ctggcgcctc caccttcagc aggagcggcc acttcatcat 7561 ccagtggagc agtggaaagc accagttgca gtagcagctc cacaccggca gtgaccacag 7621 cagcagccgc cgccagttgg aattactaga taaaaactat taagtaaaaa ctaaaaatat 7681 atatgaatat aaattcagtg caattgtaga gagaaggaga gaagaaaaag cgcgtttact 7741 tgtgattaag tttgaatgtt taaacgatga ggatacacac ccatacatat attatacata 7801 tataaatagc acttaggaac acttaggaga actctatata tatatttttt tttgtttttt 7861 ttttttgtat tgtcattaaa cattaactac taaatatagg atgttagttg tagagttata 7921 agattatagc cttaggttga gcagttgtaa tagttgtagc taaaagttta gagaagctat 7981 gcgatggagg atagaagttg agatgaggga gcagcgcaaa agtattaatg agaaaaaata 8041 aacccattta agacccccga cttgccgaag aactttaacc aaaacgtcga gatccgattg 8101 ataaggaaag atttgatctt gctaagattt tcgatttcga tttttcaatt tgtttctact 8161 tgaagactgt aagcaaaggc ggtaggattg ataactacac acgtaattcg taattctatt 8221 ctatgcatac attatattct attttttttt tttgagtaac tattatctat gattattagc 8281 agtttagctg gcttaagtgt aaataaatca agttaaataa ataaatgaaa atgtacatag 8341 atttctcgcg aggcatgagg catgatcttg ctgtcgttct tcctaacaga tcctaccttc 8401 tacacaccac cctcagcaac cgacttgttt aactatcttt tgatctcaag caaaaaacaa 8461 aaacaaaaca aaaaacgtaa ccgatattta aaagggaatt gtggaaggag tggagtgaaa 8521 atccaaagta aaa