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LOCUS XM_070218326 3782 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_070218326 VERSION XM_070218326.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3782 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3782 /gene="Actn" /note="alpha actinin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108056774" CDS 220..2973 /gene="Actn" /codon_start=1 /product="alpha-actinin, sarcomeric isoform X1" /protein_id="XP_070074427.1" /db_xref="GeneID:108056774" /translation="MMMENGLSMEYGDGYMEQEEEWEREGLLDPAWEKQQKKTFTAWC NSHLRKAGTAIDNIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDF IASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQRK TAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLSKDNPLENLNTAFDVAEKY LDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGNVTHVPEPTRQYTYVPN NYNAETAANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWLNSRQADNSLAGV QKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYLPTEGKTVSDISNS WKGLELAEKAFEEWLLAETMRLERLEHLAQKFKHKADAHEDWTRGKEEMLQSQDFRQC KLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDCVSVNARCQRICDQW DRLGALTQRRRTALDEAERILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTM EEIQGLIQAHDQFKATLGEADKEFNLIVNLVREVESIVKQHQIPGGLENPYTTLTAND MTRKWSDVRQLVPQRDQTLANELRKQQNNEMLRRQFAEKANIVGPWIERQMDAVTAIG MGLQGSLEDQLHRLKEYEQAVYAYKPNIEELEKIHQAVQESMIFENRYTNYTMETLRV GWEQLLTSINRNINEVENQILTRDSKGISQEQLNEFRSSFNHFDKNRTGRLSPEEFKS CLVSLGYSIGKDRQGDLDFQRILAVVDPNNTGYVHFDAFLDFMTRESTDTDTAEQVID SFRILAADKPYILPDELRRELPPDQAEYCIQRMPPYKGPNGVPGALDYMSFSTALYGE TDL" misc_feature 310..624 /gene="Actn" /note="first calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt1; cd21214" /db_xref="CDD:409063" misc_feature order(325..327,337..339,469..471,481..489,496..501, 544..570,592..594,598..603,610..615,619..624) /gene="Actn" /note="actin binding site [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature order(370..372,376..378,448..456) /gene="Actn" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature 634..975 /gene="Actn" /note="second calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt2; cd21216" /db_xref="CDD:409065" misc_feature order(664..666,676..678,817..825,832..837,880..906, 937..939,943..948,955..960,964..969) /gene="Actn" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409065" misc_feature 1123..1794 /gene="Actn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1477..2160 /gene="Actn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1477..1494 /gene="Actn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1792..1809 /gene="Actn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1831..2499 /gene="Actn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 2155..2172 /gene="Actn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 2542..2745 /gene="Actn" /note="EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to...; Region: EFh; cd00051" /db_xref="CDD:238008" misc_feature order(2569..2571,2575..2577,2581..2583,2602..2604, 2692..2694,2698..2700,2704..2706,2725..2727) /gene="Actn" /note="Ca2+ binding site [ion binding]; other site" /db_xref="CDD:238008" misc_feature 2758..2958 /gene="Actn" /note="Ca2+ insensitive EF hand; Region: EFhand_Ca_insen; pfam08726" /db_xref="CDD:430177" polyA_site 3782 /gene="Actn" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttcagagttg gcagctggct ggcgcgacat cagttttgag ttggctatca acgcgagcgg 61 gtctttctct tcgcaagcga cacaccagca gcaactggat caccagcaac aacagcagca 121 ccaccaccag aagcagcgag agcgagagag agtgcagcgg gacagggaac gagctagata 181 tatacaacga gcgagcggga cttctgagag cgccacaaga tgatgatgga gaacggactc 241 tccatggagt acggagatgg gtacatggag caggaggagg agtgggagcg cgagggcctt 301 ctcgaccctg cgtgggagaa gcaacagaag aagacattta ccgcctggtg taacagtcat 361 ctgcgcaaag ccggcaccgc catcgacaac atcgaggagg acttccgcaa cggcctcaag 421 ctgatgctgc tgctggaggt gatctccggc gagacgctgc ccaagcccga tcgcggcaag 481 atgcgcttcc acaagatcgc caacgtgaac aaggctctcg acttcatcgc ctccaagggc 541 gtccacctgg tgtccattgg cgccgaggag atcgtcgatg gcaacctgaa gatgaccctg 601 ggcatgatct ggacgatcat cctgcgcttc gccatccagg acatctccgt ggaggagatg 661 accgccaagg agggtctgct gctgtggtgc cagcgcaaga cggctcctta caagaacgtc 721 aacgtacaga acttccatct gtcgttcaag gatggtctgg ccttctgcgc cctcatccat 781 cgccatcgtc cagatcttat cgactacgcc aagctgtcca aagacaatcc tctggagaat 841 cttaacactg ccttcgatgt ggccgagaag tatctggata ttccgcgcat gttggatcca 901 gatgatttga tcaacactcc gaaaccggat gaacgtgcca tcatgacgta cgtctcctgc 961 tactaccacg ccttccaggg agcccaacag gttggaaatg tgacgcatgt acccgaaccc 1021 acaagacaat acacctacgt cccgaataat tacaatgcgg aaaccgctgc caaccgcatc 1081 tgcaaggtgc tcaaggtcaa ccaggagaac gagcgcctca tggaggagta cgagcgtctg 1141 gccagtgatt tgctggagtg gatccgccgc accatgccgt ggctgaactc ccgccaggcg 1201 gacaactcgc tggcgggcgt gcagaagaag ctggaggagt accgcaccta ccggcgcaag 1261 cacaagccgc cacgcgtcga gcagaaggcc aagctggaga cgaacttcaa cacgctgcag 1321 accaagctgc gcctgtccaa ccggcccgcc tacctgccca ccgagggcaa gaccgtctcg 1381 gacatctcca actcgtggaa gggcctcgag ctggccgaga aggccttcga ggagtggctg 1441 ctcgccgaga ccatgcgcct ggagcgcctc gagcatctgg cccagaagtt caagcacaag 1501 gccgatgccc acgaggactg gacgcgcggc aaggaggaga tgctgcagtc gcaggacttc 1561 cgccagtgca agctcaacga gctgaaggcc ctcaagaaga agcacgaagc ctttgagtct 1621 gacctggccg cccaccagga tcgcgtcgag cagatcgccg ccatcgccca ggagctgaac 1681 accctggagt accatgactg cgtgtcggtg aacgccaggt gccagcgcat ctgcgaccag 1741 tgggaccgcc tgggcgccct cacccagcgc aggcgcaccg ctttggacga ggccgagcgc 1801 attctggaga agatcgacat cttgcatttg gagttcgcga agcgggcggc gccgttcaac 1861 aactggctgg acgggacgcg cgaggatctg gtcgacatgt tcatcgtgca caccatggag 1921 gagatccagg gcctgatcca ggcgcacgac cagttcaagg cgacgctggg cgaggccgac 1981 aaggagttca acctgatcgt gaacctggtc cgcgaggtgg agtcgattgt gaagcagcac 2041 cagatccccg gcggcctgga gaacccctac accacgctga ccgccaacga tatgacgcgc 2101 aagtggagcg acgtccgcca gctggtccct cagcgcgacc agacgctggc caacgagctg 2161 cgcaagcagc agaacaacga gatgctgcgc cgccagttcg ccgagaaggc caacattgtc 2221 ggcccctgga tcgagcggca gatggacgcg gtgacggcca tcggcatggg actgcaggga 2281 tcgctggagg accagctgca ccggctcaag gagtacgagc aggccgtcta tgcctacaag 2341 ccgaacatcg aggagctgga gaagatccac caggcggtgc aggagtcgat gatcttcgag 2401 aaccgttaca ccaactacac gatggagacg ctgcgcgtcg gctgggagca gctgctcacc 2461 tcgatcaacc gcaacatcaa cgaggtggag aaccagatcc tcacccgcga ctccaagggc 2521 attagccagg agcagctgaa cgagttccgc agcagcttca atcacttcga caagaaccgc 2581 accggccgcc tgtcgcccga ggagttcaag tcgtgcctcg tctcgctggg ctactcgatc 2641 ggcaaggatc gccagggcga cctcgacttc cagcgcatcc tcgcggtcgt cgatccgaac 2701 aacactggct acgtgcactt cgacgccttc ctcgacttca tgacccgcga gagcaccgat 2761 accgacactg ccgaacaagt gatcgactcg ttccgaatcc tggcagccga taagccatac 2821 attttgcccg acgaactgcg ccgcgagttg cccccagacc aggccgagta ctgcatccag 2881 cgcatgccgc cctacaaggg acccaacgga gtgcccggcg ccctggacta catgtccttc 2941 agcacagctc tctacggcga gaccgacttg taggagcacc tgggcctggg catcgaggca 3001 ccacccggat ccgagcagag ccagatcata taataatgat aacctttaat aataataata 3061 ttaataaaca tagatttatt atacctacac tcgtaacggt agctgcagaa gaacttcaga 3121 gcatcatgtg aggatgaata tatttattaa tttccgtctc gagccgatgt atgcgaccca 3181 cacatacaac atacaacaaa aaacaaaagt gaaaaacaag aaattatgaa atgaaacaca 3241 cacgtacatc aaatacattt gtaaaacagc aaggcaacca tcaagtgcat atcgaatatt 3301 taaatctaat tctaaacacc aagtccaaaa caaaacaaac aaacaaaaac atcaacaaaa 3361 cgctaaaaac attatttttt gaaatttatg ttaataaaaa caaaatccat acataaaaac 3421 caaaaacaaa tgaaatcgcc aaatccgaaa gagattactt tctttgaaat aaaaacataa 3481 atactgaggg ggagggagat agccaaacaa agtggcgaaa cttgagacta cttccgcttc 3541 cgtttacgaa ccttcaagaa ccagatagac agagacggca atactgctag agacagagag 3601 agatagagag agaccactac acgaaagaaa gagttctgtt ctatattcac acaattacta 3661 tagctattta ttcatcgaca atttcagaac attagctttc gcttatctcg aatatattca 3721 cattttcaga acattttaca caactcagat aacgaatgat gaataaagcg atttcttggt 3781 ga