Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_070218192 4679 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_070218192 VERSION XM_070218192.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4679 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4679 /gene="Top1" /note="topoisomerase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108060319" CDS 597..3686 /gene="Top1" /codon_start=1 /product="DNA topoisomerase 1 isoform X1" /protein_id="XP_070074293.1" /db_xref="GeneID:108060319" /translation="MTDAQLLHCPQLYLTPSLTLSPSLSNQNIHIQNGGSCGEVVQSN GVTTNGHGHHHHHSSSGSSGSSKHKSSSKDKHRDKDREHKSSGSSSSSKDHKSSSRDK DRHKSSSSSSSSSKHRDKDKDKEHRSSSSSSHRDKDGSSSSSSSKHKSSSSSSSSSGH HKSSSKDKERRDKDKDRSSSSSSSSSSRHKSSSSSSSSRDKERSSSSSHKSSSSSSSS SSKSKHSSSRHSSSQSSSSKEPPSYDGVFVKPEPVSQPLMQQQQEHSGPIDPFHMQQL INCNGNGNGNDYKNGYEESIVDIKKEDESFNNLSQASSCDYSMSQFRADEPAFEVKHE QSYAEEDSTMNDNDQDEEADNEPEEMDNDNEEEDDDEEDVPLAMRKRKQEAPDQADGG MDDDDDDIPLLARKKVKKEPKEKSKKNKRVKEEPDDEYGSVKPKKKKIKKEHEIKTEV VSSSPTKRQKVKEEEEEVWRWWEEEKRADGVKWTTLEHKGPVFAPPYERVPRNVRFYY DGKPLELSEETEEAATFYAKMLNHDYCTKDVFNNNFFKDFRKSMTSKEKEIIKDFRKC NFQEMFNFFQAESEKRKAATKEEKLIKKNENEALMKEFGFCMIDGHKEKIGNFRLEPP GLFRGRGEHPKMGMIKRRIQSSDVSINCGKDSKVPSPPYGSRWKEVRHDNTVTWLASW IENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQ RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKD SIRYYNEVEVEKRVFKNLELFMEHKKEGDDLFDRLNTQVLNEHLKELMDGLTAKVFRT YNASKTLQSQLDLLTDPGATVPEKLLAYNRANRAVAILCNHQRSVPKGHEKSMENLKE KIKTKRDAIDDCEAEYHDLKKAAKRGSVKEKVNADKKGKQLERLKDQLKKLELQETDR DENKTIALGTSKLNYLDPRISVAWCKKNGVPIEKIFNKTQRTKFLWAIHMADEHYRF" misc_feature 2040..2684 /gene="Top1" /note="Topoisomer_IB_N_htopoI_like : N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic); Region: Topoisomer_IB_N_htopoI_like; cd03488" /db_xref="CDD:239570" misc_feature order(2040..2042,2190..2192,2460..2465,2478..2480, 2484..2486,2493..2495,2514..2516,2622..2630,2667..2672, 2676..2678) /gene="Top1" /note="DNA binding site" /db_xref="CDD:239570" misc_feature 2472..3593 /gene="Top1" /note="DNA Topoisomerase I (eukaryota); Region: TOPEUc; smart00435" /db_xref="CDD:214661" misc_feature 2484..2486 /gene="Top1" /note="topo1 poison binding [active]" /db_xref="CDD:239570" polyA_site 4679 /gene="Top1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caagtgtccc agtcccattt tgcaattaca tttatatgtg cacatacaaa cgtacagagg 61 tgtttttttt ttttgtatat gcttgtgtgt cgtctgataa gacagatgtg ccaccccgaa 121 aaaaaaacac acttactaaa taatatgctg caacaacaac aaccccgtgt gtgtgtgtgc 181 aagtgtgtgc gtgtgtagcc ttgatgcagc gcccacgttg aaaaaaaaga agaatatatg 241 cagttaaaaa aaaaaatacg attttctgta ttctccaatt tgcgcgtgtg tgtgcgtgtg 301 tgttccattg tttggcagcg gtgtttttgt atttccattt catttaacct attcttccaa 361 cgggaagaat atcgggaacg atatttccaa tttcctgtcg ccatcgctct tcggctcctc 421 ttcttcttcc tgctcatcgc atttaaccca ttgctgcccg tttcaagtga attttcctac 481 gcggcatttg tgttagggtt gatttttcac cacgtggtga gcggatagac acgagataat 541 catagtaaat ccatcaaaag gcccaggaaa tcgtgaggaa gcgaacgaga gaagctatga 601 cggatgcaca gctgctccat tgcccacaac tctatctcac tccctctctc acgctctccc 661 cttctctctc taaccagaac atccacatac aaaatggtgg cagctgcggc gaggtggttc 721 aatccaacgg ggtgaccacc aacggacacg gacaccacca ccaccacagc agcagtggga 781 gcagcgggag cagcaagcat aaatcctcca gcaaggacaa gcaccgtgat aaggacaggg 841 agcacaagag ctccggatcc tccagctcgt cgaaggatca caagagcagc agtcgcgaca 901 aggatcgcca caaaagcagc agcagcagca gctcgtcgtc gaagcatcgg gacaaggaca 961 aggacaagga gcatcgcagc agctcttcgt ctagccacag ggacaaggat gggagcagca 1021 gcagtagcag cagcaagcac aagtcctcgt cgtcatcatc gtcctcgtcc ggccaccaca 1081 agagctcctc gaaggacaag gagcgacgcg acaaggacaa ggatcgcagc agcagcagca 1141 gcagcagctc ctccagccgg cacaagtcat cctcatcctc gtccagttcc cgtgataagg 1201 agcgcagcag cagcagcagt cacaagagct cctcctcatc gtcatcctcg tcatcgaaga 1261 gcaaacattc cagttcgcgg cacagcagct cgcagtcctc ctcctcgaag gagccgccat 1321 cgtacgatgg agtgtttgtc aagccggagc ccgtttcgca gccgctgatg cagcagcagc 1381 aggagcactc tggccccatc gatcccttcc acatgcagca gctcatcaat tgcaatggca 1441 atggcaatgg caacgactac aagaacggct acgaggaatc gattgtggac atcaagaagg 1501 aggacgagag cttcaacaat ctatcgcagg cgagctcctg cgactactcc atgtcccagt 1561 ttcgagccga tgagccggca ttcgaggtga agcacgagca gagctacgcc gaggaggata 1621 gcaccatgaa cgacaatgat caggacgagg aggctgataa cgaacccgag gaaatggaca 1681 acgacaacga ggaggaggac gacgatgagg aggatgtgcc gctggccatg cgtaagcgca 1741 agcaggaggc acccgatcag gccgatggcg gcatggatga cgacgacgac gacattccgc 1801 tgctggcgcg caagaaggtc aagaaggagc ccaaggagaa gtcgaagaag aacaagcggg 1861 tcaaggagga gcccgacgac gagtacggca gtgttaagcc caagaagaaa aagatcaaaa 1921 aggaacacga aattaagacc gaggtcgtat catcatcgcc caccaaacgt cagaaggtca 1981 aggaggagga ggaggaggtg tggagatggt gggaggagga gaagcgcgca gatggcgtca 2041 agtggacaac gctggagcac aagggacccg ttttcgcacc gccctacgag cgggtgcccc 2101 gcaatgtgcg gttctactac gacggcaagc cactggaact ctccgaggag acggaggagg 2161 cggccacctt ctatgcgaag atgttgaatc atgactactg caccaaggat gtgttcaaca 2221 acaacttctt caaggacttc cgcaagtcga tgacgtccaa ggagaaggag atcatcaagg 2281 atttccgcaa gtgcaacttc caggagatgt tcaacttctt ccaggcggag tccgagaagc 2341 gcaaggcggc caccaaggag gagaagctga tcaagaagaa cgagaacgag gcgctgatga 2401 aggagtttgg cttctgtatg atcgacggcc acaaggagaa gattggcaac tttcgcctgg 2461 agcctcccgg ccttttccgt ggccgtggcg agcatcccaa aatgggcatg atcaagcgtc 2521 gcattcagtc cagcgatgtg tccattaact gcggcaagga ctccaaggtc ccctcgcccc 2581 catacggatc gcggtggaag gaggtgcgcc acgacaacac ggtcacctgg ctggcctcct 2641 ggatcgagaa cgtgcagggc caggtcaagt acatcatgct gaatccctcc tcgaagctca 2701 agggcgagaa ggatcacatt aagtacgaga cggcacggcg actggacaag gtgatcgaca 2761 agattcgggc cacctatcgc gacgaatgga agtcgaagga gatgcgagtg cgccagcggg 2821 cggttgccct ctactttatc gacaagctgg cgctgagagc gggcaacgaa aaggacgagg 2881 atcaggcgga caccgtcggc tgttgctcgc tgcgcgtcga gcacgtccag ctgcacaagg 2941 agctcaacgg caaggagaac gtggtggtgt tcgacttccc cggtaaggat tccattcgct 3001 actacaacga ggtcgaggtg gagaagcgcg tcttcaagaa cctcgagctg tttatggagc 3061 acaagaagga gggcgacgat ctcttcgatc gcctcaacac tcaggtgctc aacgagcatc 3121 tcaaggagct gatggatgga ctcacggcca aggtattccg tacgtacaac gcttcgaaaa 3181 cactgcaaag ccagctggat ctgctcaccg atccgggtgc cacggtaccg gagaagctct 3241 tggcctacaa tcgggccaat cgcgccgtgg ccatcctgtg taaccatcag cgttccgtgc 3301 ccaagggcca cgagaagtcg atggagaatc tgaaggagaa gatcaagacc aagcgggatg 3361 ccatcgatga ttgcgaggct gaatatcatg atttaaagaa ggccgccaaa cggggatccg 3421 tgaaggagaa ggtcaatgcc gacaagaagg gcaaacagct ggagcgcctg aaggatcagc 3481 tgaagaaact agaattacaa gagactgata gagacgagaa taagaccatt gccctgggca 3541 catctaagct aaactatctc gatccacgca tatcggtggc ttggtgtaaa aagaacggag 3601 tgccgatcga gaagatattt aacaaaacgc aaagaaccaa atttctgtgg gccattcaca 3661 tggccgatga gcattatcgt ttttaaattg ggttgttatc ctcacaggca cgcccaccca 3721 cacacacaga tacgcccccc tctcacacac acaaagaagc atagacagcg caggttgaaa 3781 gactaggaac ccgaagacac tttgccccga aaagtttatg caaacagtag tgcatatgtt 3841 cagcttttcg gttttcggta aaggcatttc gggatgatta tactgctcct cccccagaaa 3901 agaaagggac ggatgtattc tagggatagg gatctggatc tgcgtctgtt ttgtctgctt 3961 tggaaaaaca aaaacgtttg attgtttcaa gtgcgcgcac tacgctgaag tctaacttgc 4021 gaaatgtaca caccaaaaac atgccacaca cgcgttcaca cttctatatt gatatatata 4081 tatggatata tatattttaa acacaatata tatatatata tattatatac gagacaacaa 4141 tttaaataaa caccaagaga agaagagaaa cctgtgcaag acgtcgccgc cacctaaaaa 4201 caaaataaga gcataatttt ctatgtttta ccgtctacaa aagaagcaac aaattttttc 4261 tttttttttt gtcgtcaaaa ctctgctgac ttctcttata tatttttaat taattaattt 4321 ttatatataa actataaaca aaaaagaaag agaaagaaag taaaagctaa aaaaaaaagg 4381 aaaagaacct acaagcaaac gaaaaatgat aaaattaacg gtttttttat gtttacctat 4441 agttgatttt tgtttagcga aaaaatgtct ttcactatta attaatatta attatacaat 4501 tactacgatt acgtatttaa gtgctaaatg aacagagaaa ccttgtagcc caactttttt 4561 agcatagcat aatttattca attcaaaaaa actctgatcc agcgcaattt acccaacacg 4621 atttatgatt ttagttaaaa ttaaaaaata aacgaatgct aaattcattt gcaaacaaa