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LOCUS XM_070218158 5708 bp mRNA linear INV 09-DEC-2024 transcript variant X5, mRNA. ACCESSION XM_070218158 VERSION XM_070218158.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5708 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5708 /gene="Hr4" /note="Hormone receptor 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108056780" CDS 225..5699 /gene="Hr4" /codon_start=1 /product="hormone receptor 4 isoform X5" /protein_id="XP_070074259.1" /db_xref="GeneID:108056780" /translation="MNAQQPLILEQPKASSVVVVAASPAAEIEAATSTEAVASASATS PESISNTQNGSGINGNNHGCRRISQEEQDQQDQKDHNDQVKDVVANKLTIIKTPLNKT LLKKCNSNGSLQLQLQPHNNGNSNLSSNNNNSTRNSNNSANSDNIEIGACDSGLQSGN SNEQEPFANNNNDRHHHIYHHHHHHYHHHHGGGGGGDDKGETTSGDVASSSSADLRQV KEEPSLQDNDNHVKATAGEEEADKGGAAAEGAIGGATATATAAATAATPCNPSKCNKC NSHNNNSNCNNNNNTISNNNNNTNNNNNINNNNHYNNYNNYYKKKSRMPPICRIMTLS RGPYSELDKMSLFQDLKLKRRKIDSRCSSDGESIADTSTSSPDLLAPMSPKLCDGGLG PGASSVGVGGVSLNLPLPLPMSLPLPLPLPLTSASSATAAVTVSLAAVVAAVAEGSGG GSVAGTTVVTASVAGPCVSTSSTTTAAAASSSTPSSLSSSLSSSSSSSSTNSSSSSST STTAGATSSTTATCPASSSSSSNKSGGSIKQELHTEIHSSSSAISAAAASTVMSPPPA EPARSSPETPTNESGSGGATGGSGGSATGGSAINEHQNNGNGSGGSSRASPDSLEEKP STTTTPTNGVMSSGGGAGNGGGATGSSAKLSEAGMSVIRSVKEERLLSVSSKMMAFHQ QREQESKAAGHVTVLVTPSRIKSEPPPPASPSSTSSTLRERERERERERERERERDRE RDISSSQQHLSSRISASGSPPTQLGHGQGAMGATIVQTHHLHQQLTQPLTLRKSSPPT EHLLSQSMQHLTQQQALHLHHLLGQQQQQQASHPQQQQQQQQQQQQQQQQQQQHSPHS LVRVKKEPNVGQRHLSPHHQQQSPHLQQQQQQQHLHQQQQQHLHQQQHHQQQQQPQAL ALMHPASLALRNSNRDAAILFRVKSEVHQQVAAGLPHLMQSAGGAAAAAAAAVAAQRM VCFSNARINGVKPEVIGGPLGNLRPVGGGGNGGGGLSGGGGGGGSSVQCPSPHPSSSS SSSQLSPQTPSQTPPRGTPTVIMGESCGVRTMVWGYEPPPPTVGQSVGGQQQQQQHPQ QQQQQQSPHHQPQQQQQQQHCLSSPSAGSLTPSSSGGGSVGGPLTPSSSVTPQNNEEA AQLLLSLGQTRIQDMRARPHPFRTPHALNMERLWAGDYSQLPPGQLQALNLSAQQQQW GSSNSGGGLGGGVGGGLGGRGGGLEAPHEPTDEDEQPLVCMICEDKATGLHYGIITCE GCKGFFKRTVQNRRVYTCVADGTCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMP GGRNSGAVYNLYKVKYKKHKKTNQKQQQQAAQQQQQQQQAAAQQQHQQQQHQQQQQHQ QHQQLHSPLHHHHHQVGHQSHHPQQQHHPQLSPHHLLSPQQQQLAAAVAAAAQHQQQQ QQQQQQQQAKLMDMKPMFLGPVLKPELLQAPPMHSPAQQQQQSSPHLSLSSPHQQQQQ QQNHHQQQQPGGVSGAQLPPHLVNGTILKTALTNPSEIVHLRHRLDSAVSSSKDRQIS YEHAVAMIQTLIDCDAMEDIATLPHFSEFLEDKSEISEKLCNIGDSIVHKLVSWTKKL PFYLEIPVEIHTKLLTDKWHEILILTTAAYQALHGKRRSGDSGSSRHSSPASTPSTLV TSPPGTPNASPAAQPLHKDDPEFVSEVNSHLSTLQTCLTTLMGQPIAMEQLKLDVGHM VDKMTQITIMFRRIKLKMEEYVCLKVYILLNKEVELESIQERYVQVLRSYLQNSSPQN PQARLSELLSHIPEIQAAASLLLESKMFYVPFVLNSASIR" misc_feature 3930..4199 /gene="Hr4" /note="DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers; Region: NR_DBD_DHR4_like; cd07168" /db_xref="CDD:143542" misc_feature order(3954..3956,3963..3965,4005..4007,4014..4016, 4062..4064,4080..4082,4110..4112,4119..4121) /gene="Hr4" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:143542" misc_feature order(3984..3992,4008..4013,4017..4019,4023..4025, 4032..4034,4041..4043,4101..4106,4113..4115,4122..4124, 4155..4157,4164..4166) /gene="Hr4" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:143542" misc_feature 4905..5684 /gene="Hr4" /note="The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4; Region: NR_LBD_DHR4_like; cd06953" /db_xref="CDD:132751" misc_feature order(4995..5000,5010..5012,5112..5114,5124..5126, 5133..5135,5334..5336,5403..5405) /gene="Hr4" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:132751" misc_feature order(5025..5027,5034..5036,5046..5048,5061..5063, 5076..5081,5085..5090,5097..5102) /gene="Hr4" /note="putative coactivator recognition site [active]" /db_xref="CDD:132751" ORIGIN 1 atcataatca tagtgttaga agaagaagtc cacgaaaaaa gaaatgacaa atggttgttg 61 tgatcgaaag tgtgttttct aattgttcga tgaaatgtgc ttgatgagaa tctgtatcga 121 tatcggtgtt tgccagccag ccacaaagat ggccaaccat catcactcgt ttatccgtct 181 gtatctgccc acctagagga gattagcccc gatttgccgc ccaaatgaat gcccagcagc 241 cgctgatcct ggagcagcca aaggccagca gtgttgttgt tgttgctgca tcgccagctg 301 cggaaattga ggcggcaacg agcacggaag cggtggcaag tgcatctgca acatcgccgg 361 aatcgatttc gaatacccaa aatggtagcg gaattaatgg caataatcat ggctgccgac 421 ggatcagcca ggaggagcag gatcagcagg atcagaagga tcacaatgac caggtcaagg 481 atgtggtggc caataagctg accattatca agacgccgtt gaacaagacg ctgctgaaga 541 agtgcaacag caatggcagc ctgcaactgc aactgcaacc gcacaataat ggtaacagca 601 acctcagtag caacaacaac aatagcactc gcaacagcaa caacagtgcg aatagcgaca 661 acatcgagat tggcgcctgc gattccggtt tgcaaagcgg aaatagcaat gaacaagaac 721 catttgccaa caacaataat gatcgccatc atcacattta ccaccaccac catcatcact 781 atcatcatca tcatggcggc ggcggcggcg gcgatgataa gggcgaaaca acgagcggcg 841 atgttgcatc ctcatcctcg gcggacttga ggcaggtcaa ggaggagcca tcgctgcagg 901 ataatgacaa tcatgtgaag gcaacagcag gagaagaaga agctgataaa ggaggagcag 961 cagcagaggg agcaattgga ggagcaactg caactgcaac agcagcagca acagcagcaa 1021 caccttgcaa tcccagcaag tgcaacaagt gcaattcgca caacaacaac agcaactgca 1081 acaacaacaa taataccatc agcaataata ataacaatac caacaacaac aacaacatca 1141 acaacaataa ccattacaac aattacaata actattataa gaaaaagtct cgtatgccgc 1201 ccatttgccg aattatgaca ctgagccgtg gcccgtacag cgagctcgat aaaatgagcc 1261 tttttcaaga cctcaaactc aaacggcgga aaatcgattc gcgatgcagc agtgacggcg 1321 agtccatagc ggacacgtcc acctcgtcgc cggatctgct ggcgcccatg tcgccgaagc 1381 tctgcgacgg cggattgggc ccaggggcat cgtcggtggg ggtggggggt gtgtccctga 1441 acctgcccct gccgctgccc atgtcgctgc ccctgcccct gcccttgcca ctgacttcgg 1501 cctcttcggc gacggcggcg gtcaccgttt cgctggcagc ggtggtggcg gcagtggccg 1561 agggatccgg tggaggatcg gtagccggga cgacagtggt gacggcctcg gtggcgggac 1621 cctgcgtctc cacctcctcg acgacgacgg cggcggcggc cagctcctcg accccctcct 1681 cgctatcgtc ctcgctatcc tcctcctcct cgtcatcgtc gaccaactcc tccagcagca 1741 gcagcacctc caccaccgca ggagccacct cctccaccac ggccacctgt ccagccagca 1801 gcagcagcag tagcaataaa agcggaggca gcatcaagca ggagctccac acggagatcc 1861 actcctcgag cagcgcgatt tcggcggcag ccgcctccac ggtgatgtca ccgccgcccg 1921 cagagccggc gagatcgagt ccagaaacgc ccacaaacga atcgggatcg ggaggagcaa 1981 caggaggatc aggaggatca gcaactggag gatctgcaat caatgaacac caaaacaatg 2041 gcaacggaag cgggggcagc agtcgcgcct cgcccgattc gctggaggag aagccctcga 2101 ccacgacgac gcccacgaat ggggtgatgt catccggagg aggagcagga aatggaggag 2161 gagccaccgg aagcagcgcc aagctgagcg aggcgggaat gagtgtgata cgctccgtta 2221 aagaggagcg tctgctcagc gtctccagca agatgatggc cttccaccag cagcgggagc 2281 aggagagcaa ggcggcggga catgtgacgg ttctagtgac gccctcgagg atcaaatcgg 2341 agccaccgcc acccgcctcg ccctcctcca catccagcac tctaagggaa agggaaaggg 2401 agagggaaag ggagagagaa agggaaaggg aacgagatag agagcgggac atcagctcct 2461 cgcagcagca tctgagcagc aggatctcgg ccagcggttc gccgcccact cagctgggac 2521 acggacaggg cgccatggga gccaccatcg tccagacgca ccatctccac cagcaactca 2581 cccagccact gactttgcgc aagagcagcc cgcccacgga gcatttgctc agccagtcga 2641 tgcagcatct cacccagcag caggccctcc acctgcacca cctgctcggc cagcagcagc 2701 agcagcaggc gtcgcatccc cagcagcaac agcaacagca gcaacagcaa cagcagcaac 2761 agcagcagca gcagcaacac tcgccgcact ccttggtgcg cgtgaagaag gaaccgaatg 2821 tgggccagcg gcacttatcg ccccatcacc agcagcaatc gccgcacctg caacagcaac 2881 agcagcagca acacctacac cagcagcagc agcaacacct acaccagcag caacaccacc 2941 agcagcagca gcaaccacag gcgctggccc tcatgcatcc cgcctcgttg gcgctgagga 3001 acagcaaccg ggatgcggcc attctgtttc gggtgaagag cgaggtgcac cagcaggtgg 3061 ccgccgggct gccgcatctg atgcagtccg ccggcggagc agcggcggca gcagcggcgg 3121 cagtggccgc ccagcggatg gtctgcttca gcaatgcgcg gatcaacggg gtcaagccgg 3181 aggtgattgg cggaccgctg ggcaatttgc gaccggtggg tggaggtggc aacggaggag 3241 gcggtttgag tggcggcgga ggaggagggg gctcatccgt gcaatgcccc tcgccgcatc 3301 cctcctcctc ctcctcctcg tcgcagctgt cgccgcagac gccctcgcag acgccgcccc 3361 gcggcacgcc caccgtcatc atgggcgaga gctgcggggt gcggaccatg gtctggggct 3421 acgagccacc gccgccaacg gtgggtcagt cggtgggggg acagcagcaa cagcagcagc 3481 atccccagca gcaacagcag caacagtcgc cgcaccacca gccgcaacag cagcagcagc 3541 agcaacactg cctctcctcg ccctccgccg gctccctgac gccctcctcc tccggcggcg 3601 gctcggtggg cggacccctg acgccctcgt cctcggtgac gccgcagaac aacgaggagg 3661 ccgcccagct gctgctctcc ctgggacaga cgcgcatcca ggacatgcgg gccaggccgc 3721 atcccttccg cacgccgcat gccctcaaca tggaacgcct gtgggcgggc gactactcgc 3781 aactgccgcc cggtcaactg caggccctca atctgagtgc ccagcagcag cagtggggca 3841 gcagcaactc gggcggcgga ctgggcggcg gagtgggcgg aggactgggc ggaaggggcg 3901 gaggcctgga ggcgccgcac gagccaaccg acgaggacga acagccgctc gtctgcatga 3961 tctgcgagga caaggccact gggctgcact acggcatcat cacgtgcgag gggtgcaagg 4021 gcttcttcaa gcggacggtg cagaaccgac gcgtctacac ctgcgtggcg gacggcacct 4081 gcgagataac caaagcacag cgcaaccgtt gtcagtattg tcgatttaag aagtgcatcg 4141 agcagggcat ggtgctgcaa gccgttcgcg aggatcgcat gccgggcggt cgcaacagcg 4201 gcgccgtcta caatttgtac aaggtgaagt acaagaagca caagaagacc aaccagaagc 4261 agcagcagca ggccgcccag cagcagcagc agcagcaaca ggcggcggcg cagcagcaac 4321 accagcagca gcaacaccag cagcagcagc aacatcagca gcaccagcag ctgcactcgc 4381 cgctgcacca tcaccaccac caggtgggtc accagtcgca ccacccgcag cagcagcacc 4441 acccgcagct gtcgccgcac cacctgttgt cgccgcaaca gcagcaactg gccgccgcgg 4501 tggccgcagc tgcgcagcac caacagcagc agcagcaaca gcaacagcag cagcaggcca 4561 agctgatgga catgaagccc atgttcctgg gaccggtgct caaaccggag cttctccagg 4621 caccgcccat gcacagtccg gcgcagcagc agcaacagtc gtcgccgcat ctctcgctca 4681 gctcgccgca ccagcagcag cagcagcaac agaatcacca ccagcaacag caaccaggtg 4741 gagtatctgg ggcacaactg ccgccgcatc tcgtaaacgg aacgatactg aaaacggcgc 4801 tgaccaatcc cagcgagatt gtgcatctgc gccaccgcct cgactcggcg gtgagctcct 4861 cgaaggaccg gcagatctcc tacgagcacg ccgtggccat gatccaaacg ctgatcgact 4921 gcgatgccat ggaggacatc gccacgctgc cgcacttcag cgagttcctc gaggacaagt 4981 cggagatcag cgagaagctg tgcaacatcg gcgactcgat tgtgcacaag ctggtgtcgt 5041 ggaccaagaa gctgcccttc tatctggaga tccccgtgga gatacacacc aagttgctga 5101 cggacaagtg gcatgagata ctcatcctga cgacggccgc ctatcaggcg ttgcatggca 5161 agcggcggag cggcgacagc ggcagcagca ggcacagttc accagcctcg acgccctcga 5221 cgctggttac ctcgccaccg ggaacgccca atgcctcgcc cgccgcccag ccgctgcaca 5281 aggacgatcc ggagttcgtg agcgaggtga actcgcatct gagcaccctg cagacctgcc 5341 tgaccacgct gatgggtcaa ccgattgcca tggagcagct gaagctggac gttggccata 5401 tggtggataa gatgacccag atcacgatca tgttccggcg cattaagctc aagatggagg 5461 agtacgtttg cctgaaggtc tacatactgc tgaacaaaga agtggaactg gagagcatcc 5521 aggagcggta tgtccaggtg ctgcgctcct acctgcagaa ctcctcgccg cagaatccgc 5581 aggcgaggct cagcgagctg ctctcccaca taccagagat ccaggctgcc gccagtctgc 5641 tgctcgagag caagatgttc tatgtgccct tcgtgctcaa ctcggcgagc ataaggtagc 5701 agatgctt