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LOCUS XM_070218154 5391 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_070218154 VERSION XM_070218154.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5391 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5391 /gene="Hr4" /note="Hormone receptor 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108056780" CDS 646..5382 /gene="Hr4" /codon_start=1 /product="hormone receptor 4 isoform X1" /protein_id="XP_070074255.1" /db_xref="GeneID:108056780" /translation="MLPERVTIIPKIQKHTKSKAKSNEKAKTKKPQANTHKSKARKAT TATAKAKTTIGKQENFLFLSKFEQSAKTRKNEIMTSIGIMTLSRGPYSELDKMSLFQD LKLKRRKIDSRCSSDGESIADTSTSSPDLLAPMSPKLCDGGLGPGASSVGVGGVSLNL PLPLPMSLPLPLPLPLTSASSATAAVTVSLAAVVAAVAEGSGGGSVAGTTVVTASVAG PCVSTSSTTTAAAASSSTPSSLSSSLSSSSSSSSTNSSSSSSTSTTAGATSSTTATCP ASSSSSSNKSGGSIKQELHTEIHSSSSAISAAAASTVMSPPPAEPARSSPETPTNESG SGGATGGSGGSATGGSAINEHQNNGNGSGGSSRASPDSLEEKPSTTTTPTNGVMSSGG GAGNGGGATGSSAKLSEAGMSVIRSVKEERLLSVSSKMMAFHQQREQESKAAGHVTVL VTPSRIKSEPPPPASPSSTSSTLRERERERERERERERERDRERDISSSQQHLSSRIS ASGSPPTQLGHGQGAMGATIVQTHHLHQQLTQPLTLRKSSPPTEHLLSQSMQHLTQQQ ALHLHHLLGQQQQQQASHPQQQQQQQQQQQQQQQQQQQHSPHSLVRVKKEPNVGQRHL SPHHQQQSPHLQQQQQQQHLHQQQQQHLHQQQHHQQQQQPQALALMHPASLALRNSNR DAAILFRVKSEVHQQVAAGLPHLMQSAGGAAAAAAAAVAAQRMVCFSNARINGVKPEV IGGPLGNLRPVGGGGNGGGGLSGGGGGGGSSVQCPSPHPSSSSSSSQLSPQTPSQTPP RGTPTVIMGESCGVRTMVWGYEPPPPTVGQSVGGQQQQQQHPQQQQQQQSPHHQPQQQ QQQQHCLSSPSAGSLTPSSSGGGSVGGPLTPSSSVTPQNNEEAAQLLLSLGQTRIQDM RARPHPFRTPHALNMERLWAGDYSQLPPGQLQALNLSAQQQQWGSSNSGGGLGGGVGG GLGGRGGGLEAPHEPTDEDEQPLVCMICEDKATGLHYGIITCEGCKGFFKRTVQNRRV YTCVADGTCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVK YKKHKKTNQKQQQQAAQQQQQQQQAAAQQQHQQQQHQQQQQHQQHQQLHSPLHHHHHQ VGHQSHHPQQQHHPQLSPHHLLSPQQQQLAAAVAAAAQHQQQQQQQQQQQQAKLMDMK PMFLGPVLKPELLQAPPMHSPAQQQQQSSPHLSLSSPHQQQQQQQNHHQQQQPGGVSG AQLPPHLVNGTILKTALTNPSEIVHLRHRLDSAVSSSKDRQISYEHAVAMIQTLIDCD AMEDIATLPHFSEFLEDKSEISEKLCNIGDSIVHKLVSWTKKLPFYLEIPVEIHTKLL TDKWHEILILTTAAYQALHGKRRSGDSGSSRHSSPASTPSTLVTSPPGTPNASPAAQP LHKDDPEFVSEVNSHLSTLQTCLTTLMGQPIAMEQLKLDVGHMVDKMTQITIMFRRIK LKMEEYVCLKVYILLNKAEVELESIQERYVQVLRSYLQNSSPQNPQARLSELLSHIPE IQAAASLLLESKMFYVPFVLNSASIR" misc_feature 3610..3879 /gene="Hr4" /note="DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers; Region: NR_DBD_DHR4_like; cd07168" /db_xref="CDD:143542" misc_feature order(3634..3636,3643..3645,3685..3687,3694..3696, 3742..3744,3760..3762,3790..3792,3799..3801) /gene="Hr4" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:143542" misc_feature order(3664..3672,3688..3693,3697..3699,3703..3705, 3712..3714,3721..3723,3781..3786,3793..3795,3802..3804, 3835..3837,3844..3846) /gene="Hr4" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:143542" misc_feature 4585..5367 /gene="Hr4" /note="The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4; Region: NR_LBD_DHR4_like; cd06953" /db_xref="CDD:132751" misc_feature order(4675..4680,4690..4692,4792..4794,4804..4806, 4813..4815,5014..5016,5083..5085) /gene="Hr4" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:132751" misc_feature order(4705..4707,4714..4716,4726..4728,4741..4743, 4756..4761,4765..4770,4777..4782) /gene="Hr4" /note="putative coactivator recognition site [active]" /db_xref="CDD:132751" ORIGIN 1 ctttatttcg ttcgcatgta cgcacgttgg ccgcggagca acatctcccc gaaacaagca 61 acaaaaaaaa aaacagaaaa cagaaaaaag aaacaaacag aaaataaaac aaaaccaaag 121 gcactgaaat taaacaacag caacaacaaa cacggcagca gccgtcgctc agacgcggaa 181 acttggctcg aactttagtt tggtttcagt tgccaaatgg atagtggcta gagtgcggcg 241 gtatcggttg aatcggttga atcggttgaa tcgtctgaat cggttgaatc gtctgaatcg 301 gtggaatcgc ctgtatcggt taggcacgcg ccaaaaaccc ttttttttaa gtttcttcaa 361 gttgttagtg gtactcaaaa aacaaaacaa aaacagcata cattatacat gtgtttatgt 421 aaagtatagg caagaatcga aagccaagag tgaaaattcc agtcaaacgt aaaagtgcaa 481 ccaacaattg gccaagacta ttgaaaaaac gaaaaaagac agaacaaaac agaaccccca 541 cccctaaaaa aaaacacaaa caaaaaaacc aaccctacaa acccactgga atgcatgctg 601 ccactgccac tctgctctgc agcagaacca aaaaaagcag tctagatgct tcccgaacga 661 gtcacaataa taccaaaaat ccaaaaacat actaaatcca aagccaaatc aaatgaaaaa 721 gcaaaaacaa agaaaccaca ggcaaacaca cacaaaagca aggcaagaaa agcaacgaca 781 gcaacagcaa aagcaaaaac aacgatcggc aaacaagaga attttttgtt tttatcaaaa 841 tttgaacaat cggcaaagac aagaaaaaac gaaattatga catccatagg aattatgaca 901 ctgagccgtg gcccgtacag cgagctcgat aaaatgagcc tttttcaaga cctcaaactc 961 aaacggcgga aaatcgattc gcgatgcagc agtgacggcg agtccatagc ggacacgtcc 1021 acctcgtcgc cggatctgct ggcgcccatg tcgccgaagc tctgcgacgg cggattgggc 1081 ccaggggcat cgtcggtggg ggtggggggt gtgtccctga acctgcccct gccgctgccc 1141 atgtcgctgc ccctgcccct gcccttgcca ctgacttcgg cctcttcggc gacggcggcg 1201 gtcaccgttt cgctggcagc ggtggtggcg gcagtggccg agggatccgg tggaggatcg 1261 gtagccggga cgacagtggt gacggcctcg gtggcgggac cctgcgtctc cacctcctcg 1321 acgacgacgg cggcggcggc cagctcctcg accccctcct cgctatcgtc ctcgctatcc 1381 tcctcctcct cgtcatcgtc gaccaactcc tccagcagca gcagcacctc caccaccgca 1441 ggagccacct cctccaccac ggccacctgt ccagccagca gcagcagcag tagcaataaa 1501 agcggaggca gcatcaagca ggagctccac acggagatcc actcctcgag cagcgcgatt 1561 tcggcggcag ccgcctccac ggtgatgtca ccgccgcccg cagagccggc gagatcgagt 1621 ccagaaacgc ccacaaacga atcgggatcg ggaggagcaa caggaggatc aggaggatca 1681 gcaactggag gatctgcaat caatgaacac caaaacaatg gcaacggaag cgggggcagc 1741 agtcgcgcct cgcccgattc gctggaggag aagccctcga ccacgacgac gcccacgaat 1801 ggggtgatgt catccggagg aggagcagga aatggaggag gagccaccgg aagcagcgcc 1861 aagctgagcg aggcgggaat gagtgtgata cgctccgtta aagaggagcg tctgctcagc 1921 gtctccagca agatgatggc cttccaccag cagcgggagc aggagagcaa ggcggcggga 1981 catgtgacgg ttctagtgac gccctcgagg atcaaatcgg agccaccgcc acccgcctcg 2041 ccctcctcca catccagcac tctaagggaa agggaaaggg agagggaaag ggagagagaa 2101 agggaaaggg aacgagatag agagcgggac atcagctcct cgcagcagca tctgagcagc 2161 aggatctcgg ccagcggttc gccgcccact cagctgggac acggacaggg cgccatggga 2221 gccaccatcg tccagacgca ccatctccac cagcaactca cccagccact gactttgcgc 2281 aagagcagcc cgcccacgga gcatttgctc agccagtcga tgcagcatct cacccagcag 2341 caggccctcc acctgcacca cctgctcggc cagcagcagc agcagcaggc gtcgcatccc 2401 cagcagcaac agcaacagca gcaacagcaa cagcagcaac agcagcagca gcagcaacac 2461 tcgccgcact ccttggtgcg cgtgaagaag gaaccgaatg tgggccagcg gcacttatcg 2521 ccccatcacc agcagcaatc gccgcacctg caacagcaac agcagcagca acacctacac 2581 cagcagcagc agcaacacct acaccagcag caacaccacc agcagcagca gcaaccacag 2641 gcgctggccc tcatgcatcc cgcctcgttg gcgctgagga acagcaaccg ggatgcggcc 2701 attctgtttc gggtgaagag cgaggtgcac cagcaggtgg ccgccgggct gccgcatctg 2761 atgcagtccg ccggcggagc agcggcggca gcagcggcgg cagtggccgc ccagcggatg 2821 gtctgcttca gcaatgcgcg gatcaacggg gtcaagccgg aggtgattgg cggaccgctg 2881 ggcaatttgc gaccggtggg tggaggtggc aacggaggag gcggtttgag tggcggcgga 2941 ggaggagggg gctcatccgt gcaatgcccc tcgccgcatc cctcctcctc ctcctcctcg 3001 tcgcagctgt cgccgcagac gccctcgcag acgccgcccc gcggcacgcc caccgtcatc 3061 atgggcgaga gctgcggggt gcggaccatg gtctggggct acgagccacc gccgccaacg 3121 gtgggtcagt cggtgggggg acagcagcaa cagcagcagc atccccagca gcaacagcag 3181 caacagtcgc cgcaccacca gccgcaacag cagcagcagc agcaacactg cctctcctcg 3241 ccctccgccg gctccctgac gccctcctcc tccggcggcg gctcggtggg cggacccctg 3301 acgccctcgt cctcggtgac gccgcagaac aacgaggagg ccgcccagct gctgctctcc 3361 ctgggacaga cgcgcatcca ggacatgcgg gccaggccgc atcccttccg cacgccgcat 3421 gccctcaaca tggaacgcct gtgggcgggc gactactcgc aactgccgcc cggtcaactg 3481 caggccctca atctgagtgc ccagcagcag cagtggggca gcagcaactc gggcggcgga 3541 ctgggcggcg gagtgggcgg aggactgggc ggaaggggcg gaggcctgga ggcgccgcac 3601 gagccaaccg acgaggacga acagccgctc gtctgcatga tctgcgagga caaggccact 3661 gggctgcact acggcatcat cacgtgcgag gggtgcaagg gcttcttcaa gcggacggtg 3721 cagaaccgac gcgtctacac ctgcgtggcg gacggcacct gcgagataac caaagcacag 3781 cgcaaccgtt gtcagtattg tcgatttaag aagtgcatcg agcagggcat ggtgctgcaa 3841 gccgttcgcg aggatcgcat gccgggcggt cgcaacagcg gcgccgtcta caatttgtac 3901 aaggtgaagt acaagaagca caagaagacc aaccagaagc agcagcagca ggccgcccag 3961 cagcagcagc agcagcaaca ggcggcggcg cagcagcaac accagcagca gcaacaccag 4021 cagcagcagc aacatcagca gcaccagcag ctgcactcgc cgctgcacca tcaccaccac 4081 caggtgggtc accagtcgca ccacccgcag cagcagcacc acccgcagct gtcgccgcac 4141 cacctgttgt cgccgcaaca gcagcaactg gccgccgcgg tggccgcagc tgcgcagcac 4201 caacagcagc agcagcaaca gcaacagcag cagcaggcca agctgatgga catgaagccc 4261 atgttcctgg gaccggtgct caaaccggag cttctccagg caccgcccat gcacagtccg 4321 gcgcagcagc agcaacagtc gtcgccgcat ctctcgctca gctcgccgca ccagcagcag 4381 cagcagcaac agaatcacca ccagcaacag caaccaggtg gagtatctgg ggcacaactg 4441 ccgccgcatc tcgtaaacgg aacgatactg aaaacggcgc tgaccaatcc cagcgagatt 4501 gtgcatctgc gccaccgcct cgactcggcg gtgagctcct cgaaggaccg gcagatctcc 4561 tacgagcacg ccgtggccat gatccaaacg ctgatcgact gcgatgccat ggaggacatc 4621 gccacgctgc cgcacttcag cgagttcctc gaggacaagt cggagatcag cgagaagctg 4681 tgcaacatcg gcgactcgat tgtgcacaag ctggtgtcgt ggaccaagaa gctgcccttc 4741 tatctggaga tccccgtgga gatacacacc aagttgctga cggacaagtg gcatgagata 4801 ctcatcctga cgacggccgc ctatcaggcg ttgcatggca agcggcggag cggcgacagc 4861 ggcagcagca ggcacagttc accagcctcg acgccctcga cgctggttac ctcgccaccg 4921 ggaacgccca atgcctcgcc cgccgcccag ccgctgcaca aggacgatcc ggagttcgtg 4981 agcgaggtga actcgcatct gagcaccctg cagacctgcc tgaccacgct gatgggtcaa 5041 ccgattgcca tggagcagct gaagctggac gttggccata tggtggataa gatgacccag 5101 atcacgatca tgttccggcg cattaagctc aagatggagg agtacgtttg cctgaaggtc 5161 tacatactgc tgaacaaagc agaagtggaa ctggagagca tccaggagcg gtatgtccag 5221 gtgctgcgct cctacctgca gaactcctcg ccgcagaatc cgcaggcgag gctcagcgag 5281 ctgctctccc acataccaga gatccaggct gccgccagtc tgctgctcga gagcaagatg 5341 ttctatgtgc ccttcgtgct caactcggcg agcataaggt agcagatgct t