Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_044396095 6482 bp mRNA linear INV 09-DEC-2024 (LOC123003484), transcript variant X2, mRNA. ACCESSION XM_044396095 VERSION XM_044396095.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044396095.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6482 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6482 /gene="LOC123003484" /note="uncharacterized LOC123003484; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:123003484" CDS 833..6043 /gene="LOC123003484" /codon_start=1 /product="uncharacterized protein isoform X2" /protein_id="XP_044252030.1" /db_xref="GeneID:123003484" /translation="MAADKDQEQGQASSDASLSNLHILQADIFERVKQLYQNFKKDSQ SRKTKIYFQTRINKLENFSKEFDTNHQTLLLNGCSPEHEYFTSQLAARFEESYLTYYC EIGDAFETRFPTVPSDATPSHSNSTMHNTTMLQAPGSTVQLPKLPVPSYSGKLTEWPA FHDVFQQLIHDNGALSSIQKFHFLKQALPADRDQDVHQMDLTEANYLVAWSLIVTRYN NPRLLFMHHMNTLYELPSISKESSAELKHMLNVANVCINEFKRLNIAIANCDHWIVHH LTTKLPSQTIQAWEHSLGSTKEIPTFFTLESFLNNRLFSIDIIEGRKVPPPPRQPQGV NGFQRNVIKHSGNAQTRISSCHTSGVTTNSVRCAHCNDQHILRRCPDFLAKDSFARKL IVDRSKVCLNCLSPTHSLSKCNSSKNCLQCGQRHHTLLHFPTQVKASDVAQSAGNITS LNSQGLTASSNTTQLISASASHSTPHTMILATALVRLHSNATGQSAVVRALIDHGSEG TLVTETVVQALGLPRFPVSAEISGVGGNSTNRCKYRTECTLSSTTNSGFKMWVENAFV LRTLTSPLPRTNLTLPTCPHLTGLELADPNFMHTNSIDVLLGVDTIPQFMMSGIRRGS YDQPIAQCTQLGWIIFGRITPKQTHTISIQCHHSNLETLVQKFFELEARKFQKKPDLY EQYSKVMEEYFELHQITEAITSEEQHRLADKGGSISYTACTLPHHAVLKADSSTTKLR VVYDASCKTSNGKSLNDILCIGPALQNDLGGVILNWRFLQYVFAADIQKMYRCIDVHP EDTHFQRIIWQRENNAIKDYCLTTVTFGTASAPYTAIRIMHQIAQDERDQFPLAEHVL RKEIYVDDLQSGHETIKGALQVRDDVIGALQSAGMELRKWAANHPSLLNSIPPEHMSN SKILEIENQESIKTLGLYWHPKEDFYGFKLKFTIDEIFTKRSILATVARLYDPLGFVA PVIIIAKVILKEVWSIRIQQADGTPAGLAWDATVPPVIQHKWKEYCTNLLKIESLRIP RWLQYLPSTIASLQLHIFCDGSSMAYAACAYVRVQHTNNSVYTHLIAAKSRVTPTKPL TIPRVELCGAVLAAQLGDWLCKQIDQPTHPISTYFWSDATIVLYWIAGDPLHWKTFVA NRVGRILESSSASQWRHVPTGDNPADCATRGLYPDQLAAYDLWWQGPSWLRLPESQWP SKIFDIPDSTNLSCEQKSLSLQTHSCVERNPNSLLTSFSSYNKLLFIMAYVRRFIHNS QTRVDSRQRGPVTAQEFQQALGHIVRLVQHETFKVEIQKIKTKTHLSRSNKLSQLSPF LDNEGVLRVRGRLKNALHLSPHQRTPIILPKDHHFTELVIRNAHLNTLHGGISLTLAV TRQTFWILNGKQAVKKILHKCVDCFKHRPKAVTQLMGDLPLHRVNPPKRAFEATGVDY TGALEIKASKFRGHHKYKAYIAVFICLATKAVHLEAVTGLSSQDFLWALQRFIGRRGY CQHIYSDCGTNFIGADKSLNLWHEEFRQSVIATVIPKLTAQQIQWHFNPPHSPNFGGL WEANVKAVKTHLHRTCKGALMTYEQLSTILVQIEACLNSRPLCPLSSDMEDLAVLTPA HFLIGDSMMALPNPSASDKSLNAQFLEGQRLLRTFWHRWSSDWLSHLQSRPKWQRVEE NLRLHDIVIIKDDRLPPNEWKLGRIVELHPGSDNLIRVASIKTASGIYKRSLSKICPL PLATYSEATE" misc_feature 1283..1726 /gene="LOC123003484" /note="Protein of unknown function (DUF1759); Region: DUF1759; pfam03564" /db_xref="CDD:281552" misc_feature 2297..2749 /gene="LOC123003484" /note="Cellular and retroviral pepsin-like aspartate proteases; Region: pepsin_retropepsin_like; cl11403" /db_xref="CDD:472175" misc_feature order(2339..2341,2345..2347,2351..2353,2420..2428) /gene="LOC123003484" /note="inhibitor binding site [active]" /db_xref="CDD:133137" misc_feature 2339..2347 /gene="LOC123003484" /note="catalytic motif [active]" /db_xref="CDD:133137" misc_feature 2339..2341 /gene="LOC123003484" /note="Catalytic residue [active]" /db_xref="CDD:133137" misc_feature order(2420..2431,2441..2452) /gene="LOC123003484" /note="Active site flap [active]" /db_xref="CDD:133137" misc_feature 3002..3646 /gene="LOC123003484" /note="conserved catalytic core domain of RNA-dependent RNA polymerase (RdRp) from the positive-sense single-stranded RNA [(+)ssRNA] viruses and closely related viruses; Region: ps-ssRNAv_RdRp-like; cl40470" /db_xref="CDD:477363" misc_feature order(3188..3205,3305..3310,3413..3415,3419..3424, 3632..3637) /gene="LOC123003484" /note="active site" /db_xref="CDD:238822" misc_feature order(3188..3205,3305..3307,3419..3421) /gene="LOC123003484" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:238822" misc_feature 3308..3310 /gene="LOC123003484" /note="nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:238822" misc_feature 3689..4210 /gene="LOC123003484" /note="Pao retrotransposon peptidase; Region: Peptidase_A17; pfam05380" /db_xref="CDD:461634" misc_feature 4886..5056 /gene="LOC123003484" /note="Integrase zinc binding domain; Region: Integrase_H2C2; pfam17921" /db_xref="CDD:465569" misc_feature 5747..6010 /gene="LOC123003484" /note="Family of unknown function (DUF5641); Region: DUF5641; pfam18701" /db_xref="CDD:465838" ORIGIN 1 cggacgtttg ctgtagttga gagaacataa acccaccact ctgttataac cgagttttat 61 gtaaagggag tcacaagaga gagaacgatc gacgattctt ttatgggcat cgaacagaag 121 cagtcatccc agccgctggt cgcgtttaat aatctaatat aataaattaa aattgatacc 181 attgtcagca ttgaagattg taaagtgaaa aaactgaatt cgaagtaatt gtagataata 241 aatagaccat ccatgaagtg caccttttag agttataatt ttcaaattgg tggaaaaacc 301 ccagagcatc tttgctcatc tttgacaata taaattgtca caacattttg gtggcccatg 361 aggggaccca tccaatcacg ccttctggaa taattatcta ctaatctgtt ttcgaattaa 421 ttaatcagtt tggatctaaa ctttgtgaaa tctggcacat ggttataaat tttccattcg 481 caactacata taaccagcaa acggcagcac atgtataagt gctgttacac tatcgtccca 541 tacgctttac cctccaactg cgctgccctg ccgatccatc gctttgccga agtcaacgtg 601 ggttaattta gatgctggag agaagctgtt tcgctgccga aatctatcac gtcgcatccc 661 ccacaccttt tcgtcaaacc tggagcgact tcacttggac ttccagactt ttcgttcaat 721 ttcgttacgt cacaacttga aaggggtaag tgtcgttgtg gtgtgttggt gagttgacaa 781 agtattgagt acatttttca gtgtataaga gtaatacaat caaagctgaa acatggcagc 841 agataaagac caggagcagg ggcaggcatc cagcgatgcc agcctatcaa acctacatat 901 acttcaagct gatatttttg aacgtgttaa acaactttat caaaatttta aaaaggatag 961 tcagtcaaga aaaactaaaa tctattttca aactcgtata aataaacttg aaaatttctc 1021 aaaggaattc gacaccaatc atcaaactct tttattgaac ggttgctcac ctgaacatga 1081 atattttacc tctcaactag cagcaaggtt tgaagagtct tacttaacat attattgcga 1141 gattggagac gccttcgaga cccggtttcc aacagttccc agcgacgcta ctcctagcca 1201 ttctaattca acgatgcaca acaccaccat gctacaagcg cctggctcta cagttcaact 1261 accaaaatta ccagtaccta gttattctgg caagctgact gaatggccag cctttcatga 1321 tgtctttcaa caacttattc acgataatgg tgcactttcc agcatacaaa aattccactt 1381 tctgaagcaa gcactcccag cggaccgaga tcaagacgtg catcaaatgg acttgactga 1441 agcgaattat ctcgtcgcct ggagtctcat tgttacgcgt tataataatc cccgattgtt 1501 attcatgcat catatgaata ccctatatga gttgccatca atttccaaag aaagttcagc 1561 cgaactaaaa catatgttaa acgttgccaa cgtttgcatc aatgagttca aacgcctcaa 1621 cattgcaatt gccaattgcg atcattggat tgtgcatcat ctcaccacta agctgccatc 1681 gcaaactatc caagcctggg aacacagtct tgggagtaca aaggaaatcc caaccttttt 1741 cactttggaa tcatttctca acaaccgact ttttagcatc gatataattg aaggtcgcaa 1801 ggttccacct ccaccacggc aaccacaagg agtcaacggc ttccaacgaa acgtcatcaa 1861 acattcaggc aacgcacaaa ccaggatcag tagctgccat acttcagggg ttactaccaa 1921 ctctgttcgc tgcgctcatt gcaatgacca acacatctta cgtcgttgtc cagacttttt 1981 agcaaaggat tctttcgctc gcaaacttat tgttgaccgc agtaaggtat gtctcaattg 2041 cctcagcccc acccattctc tgtcaaaatg taacagcagc aaaaactgtt tacaatgtgg 2101 acaacgccat cacactctct tacatttccc aacccaggta aaggctagtg atgtcgcgca 2161 gtctgcagga aacataacta gtctcaactc acagggtctg acagcatcta gcaacaccac 2221 acagctcatc agcgcgtcag cctcacattc aacacctcat acgatgattc tcgcaactgc 2281 tctggttcgt cttcatagta atgccacagg tcagtcagcg gtggtccgag cccttatcga 2341 tcatggatca gaaggtaccc ttgttacgga aactgtagtc caagcgctag ggcttccccg 2401 atttccagtc tcagcagaaa tatcaggggt aggagggaat tccaccaaca ggtgcaaata 2461 tcgcaccgaa tgtactttaa gctcaactac taattcagga ttcaagatgt gggtggaaaa 2521 tgccttcgtt ttgcgtaccc tgacttctcc tttaccaagg acgaatctaa ctctaccaac 2581 gtgtccacat ttaactgggt tggagctcgc cgacccaaat tttatgcaca ctaatagcat 2641 agatgtgctc ctcggcgtgg acaccattcc acaatttatg atgagtggaa tcaggagagg 2701 atcttacgat caaccaattg cccaatgcac gcaacttggt tggatcattt ttggcagaat 2761 tacgccaaaa cagacacaca cgatatccat acaatgtcat cattctaatc tggaaactct 2821 agttcaaaaa ttcttcgaat tggaagcacg aaaattccaa aagaaaccag atctgtatga 2881 acaatactca aaggtcatgg aggaatactt cgagctgcac caaataactg aagccatcac 2941 ctcagaagaa cagcatcgcc tggcggacaa aggaggctca atcagttata ctgcatgcac 3001 attaccccat catgcagttc tgaaggcgga cagcagcacc acaaaacttc gagttgtgta 3061 cgacgcctca tgcaagacat caaatggaaa atcgctcaac gacattctct gtataggccc 3121 agccttacaa aacgaccttg gtggggtcat tctcaattgg cgatttttac aatatgtctt 3181 tgcggccgat attcagaaaa tgtatcgttg catcgatgta cacccggagg atacacactt 3241 ccaacggatt atttggcaaa gggaaaacaa tgctataaag gattattgtt taacaactgt 3301 gacgtttgga acagcatcag ccccgtacac agccattcgc atcatgcatc agatcgctca 3361 ggatgaacga gatcaatttc cattagcaga acatgtttta cgaaaagaaa tatatgtgga 3421 tgatttgcaa agtggacatg agacaattaa gggagccctt caagttcgag atgatgtcat 3481 cggggcactt caatcagctg gtatggagct tcgaaaatgg gcagcaaatc atcccagtct 3541 tttgaactct attcctcctg agcacatgtc caattccaaa attttggaaa tcgaaaacca 3601 agagtccatt aaaactttgg ggctatattg gcaccccaag gaagactttt atggtttcaa 3661 attaaaattt acaattgatg aaattttcac taaacgatca attcttgcta cagttgcacg 3721 tctgtacgat cctttaggtt tcgttgctcc agtcataatc atcgccaagg ttattctcaa 3781 agaagtctgg agcatacgta ttcaacaggc tgatggcact ccagcaggat tagcttggga 3841 cgcaacggta ccgccagtaa ttcagcacaa gtggaaagaa tactgcacca atttacttaa 3901 aattgaatca ctgagaatac cccgatggtt acagtattta cccagcacca tcgcatcctt 3961 gcagctgcat atcttttgtg atggctcttc tatggcatac gcagcgtgtg cctatgtgcg 4021 ggtccaacat acaaataact cggtatacac gcatctcata gctgcaaaga gtcgagtcac 4081 acccacaaag ccgttgacaa ttcctagagt ggaactatgt ggagctgtac tcgccgcaca 4141 actgggtgac tggctctgca agcaaataga tcaaccaacg catcccattt cgacctattt 4201 ctggagcgac gcaacgatcg ttctttattg gattgcgggg gatcccttac attggaaaac 4261 attcgtagcg aatcgtgtag gacgaatttt ggagtccagt tctgcatctc aatggagaca 4321 tgtgcccacc ggagataacc ctgcagactg cgcgacgcgt ggtctctatc cagatcaatt 4381 agctgcctat gatttatggt ggcaggggcc ttcttggcta cgactaccag aatctcaatg 4441 gcctagcaaa atctttgaca ttcctgatag caccaatctc tcgtgtgagc aaaaatcgct 4501 ttctctacaa acccacagct gcgttgagag aaatccaaac tctttactca cgtcgttttc 4561 atcttacaac aaacttctgt ttataatggc ttacgtacga cgctttattc acaattcaca 4621 aacgcgcgtg gactctcgac agagaggtcc agttaccgcc caggagtttc agcaggcact 4681 agggcacatt gtccgactag tgcaacatga aacgtttaag gtggagattc aaaaaataaa 4741 gacaaaaaca catttatcta gatcgaacaa attaagtcaa ctttccccat ttctagataa 4801 cgaaggagtg ctgcgtgtcc gagggagatt gaaaaatgca ttgcacctat cgccgcatca 4861 acgcacaccg atcattttgc caaaggatca tcattttacc gaacttgtca ttcgtaatgc 4921 tcatctcaac acattacatg gcgggatatc acttacactg gcagtgacaa ggcaaacgtt 4981 ttggattctt aatgggaaac aggcagttaa aaagattctg cacaaatgtg ttgactgctt 5041 caagcacaga ccgaaggcag tcacgcagct catgggagac cttcccttac atcgagtgaa 5101 cccaccaaag cgagcctttg aagccacagg cgtggactat accggtgcgc tagaaatcaa 5161 agcgtcaaag tttcgtggac accacaaata caaggcatat attgcagttt ttatatgctt 5221 ggcgacaaag gcagtccact tggaagctgt taccggattg tcttctcagg attttttgtg 5281 ggctctacaa cgttttattg gcagacgtgg atactgccaa cacatctaca gcgattgcgg 5341 taccaatttc attggagcag ataaatccct aaacctttgg catgaagagt ttcgacaaag 5401 cgttatcgca acggttattc caaaattaac cgctcagcag attcaatggc atttcaatcc 5461 gccacacagc ccaaacttcg gtggattatg ggaggcgaat gttaaagcgg ttaagacaca 5521 cttacatcgc acgtgtaaag gggcgctcat gacctacgaa caactctcaa ctattttggt 5581 tcaaatcgaa gcctgtttga actctcgccc actttgcccg ttgagctcgg atatggagga 5641 tttagcagta ctgacaccgg cccatttctt aattggcgat tccatgatgg cgctacctaa 5701 tccatcagct tcggataaat cgttaaacgc acaattcttg gaaggacaaa gactgcttcg 5761 aaccttttgg catcgttgga gctcggattg gctttcacac ttacaatctc gtccaaaatg 5821 gcagcgggtt gaggaaaact tgcgtttaca cgacatagtt attattaaag atgatcggct 5881 tccgccaaat gaatggaagc tcggtcgcat agtcgaatta catccaggat ctgataatct 5941 cattcgagtc gcatctatta agacggcatc cggaatttat aaacgctctt tgtcgaaaat 6001 ctgtccattg ccattagcta cttattcaga ggctacggaa taaacattaa ttacgtacat 6061 actttgtcca cctctacata tcgtaatgac acttatttct ttacagcaaa gtgcagaaat 6121 ttggtttaaa tactggactc agtatttggg ggcggcatgt tcggacgttt gctgtagttg 6181 agagaacata aacccaccac tctgttataa ccgagtttta tgtaaaggga gtcacaagag 6241 agagaacgat cgacgattct tttatgggca tcgaacagaa gcagtcatcc cagccgctgg 6301 tcgcgtttaa taatctaata taataaatta aaattgatac cattgtcagc attgaagatt 6361 gtaaagtgaa aaaactgaat tcgaagtaat tgtagataat aaatagacca tccatgaagt 6421 gcacctttta gagttataat tttcaaattg gtggaaaaac cccagagcat ctttgctcat 6481 ct