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LOCUS XM_044396094 6608 bp mRNA linear INV 09-DEC-2024 (LOC123003484), transcript variant X1, mRNA. ACCESSION XM_044396094 VERSION XM_044396094.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044396094.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6608 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6608 /gene="LOC123003484" /note="uncharacterized LOC123003484; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:123003484" CDS 777..6170 /gene="LOC123003484" /codon_start=1 /product="uncharacterized protein isoform X1" /protein_id="XP_044252029.1" /db_xref="GeneID:123003484" /translation="MAADKDQEQGQASSDASLSNLHILQADIFERVKQLYQNFKKDSQ SRKTKIYFQTRINKLENFSKEFDTNHQTLLLNGCSPEHEYFTSQLAARFEESYLTYYC EIGDAFETRFPTVPSDATPSHSNSTMHNTTMLQAPGSTVQLPKLPVPSYSGKLTEWPA FHDVFQQLIHDNGALSSIQKFHFLKQALPADRDQDVHQMDLTEANYLVAWSLIVTRYN NPRLLFMHHMNTLYELPSISKESSAELKHMLNVANVCINEFKRLNIAIANCDHWIVHH LTTKLPSQTIQAWEHSLGSTKEIPTFFTLESFLNNRLFSIDIIEGRKVPPPPRQPQGV NGFQRNVIKHSGNAQTRISSCHTSGVTTNSVRCAHCNDQHILRRCPDFLAKDSFARKL IVDRSKVCLNCLSPTHSLSKCNSSKNCLQCGQRHHTLLHFPTQVKASDVAQSAGNITS LNSQGLTASSNTTQLISASASHSTPHTMILATALVRLHSNATGQSAVVRALIDHGSEG TLVTETVVQALGLPRFPVSAEISGVGGNSTNRCKYRTECTLSSTTNSGFKMWVENAFV LRTLTSPLPRTNLTLPTCPHLTGLELADPNFMHTNSIDVLLGVDTIPQFMMSGIRRGS YDQPIAQCTQLGWIIFGRITPKQTHTISIQCHHSNLETLVQKFFELEAVSTTRLYTAE EQWCEDHFKRTHIRQPNGKYMVRLPFKTLFDPNQTIGKSKQTALNRFHFLQRKFQKKP DLYEQYSKVMEEYFELHQITEAITSEEQHRLADKGGSISYTACTLPHHAVLKADSSTT KLRVVYDASCKTSNGKSLNDILCIGPALQNDLGGVILNWRFLQYVFAADIQKMYRCID VHPEDTHFQRIIWQRENNAIKDYCLTTVTFGTASAPYTAIRIMHQIAQDERDQFPLAE HVLRKEIYVDDLQSGHETIKGALQVRDDVIGALQSAGMELRKWAANHPSLLNSIPPEH MSNSKILEIENQESIKTLGLYWHPKEDFYGFKLKFTIDEIFTKRSILATVARLYDPLG FVAPVIIIAKVILKEVWSIRIQQADGTPAGLAWDATVPPVIQHKWKEYCTNLLKIESL RIPRWLQYLPSTIASLQLHIFCDGSSMAYAACAYVRVQHTNNSVYTHLIAAKSRVTPT KPLTIPRVELCGAVLAAQLGDWLCKQIDQPTHPISTYFWSDATIVLYWIAGDPLHWKT FVANRVGRILESSSASQWRHVPTGDNPADCATRGLYPDQLAAYDLWWQGPSWLRLPES QWPSKIFDIPDSTNLSCEQKSLSLQTHSCVERNPNSLLTSFSSYNKLLFIMAYVRRFI HNSQTRVDSRQRGPVTAQEFQQALGHIVRLVQHETFKVEIQKIKTKTHLSRSNKLSQL SPFLDNEGVLRVRGRLKNALHLSPHQRTPIILPKDHHFTELVIRNAHLNTLHGGISLT LAVTRQTFWILNGKQAVKKILHKCVDCFKHRPKAVTQLMGDLPLHRVNPPKRAFEATG VDYTGALEIKASKFRGHHKYKAYIAVFICLATKAVHLEAVTGLSSQDFLWALQRFIGR RGYCQHIYSDCGTNFIGADKSLNLWHEEFRQSVIATVIPKLTAQQIQWHFNPPHSPNF GGLWEANVKAVKTHLHRTCKGALMTYEQLSTILVQIEACLNSRPLCPLSSDMEDLAVL TPAHFLIGDSMMALPNPSASDKSLNAQFLEGQRLLRTFWHRWSSDWLSHLQSRPKWQR VEENLRLHDIVIIKDDRLPPNEWKLGRIVELHPGSDNLIRVASIKTASGIYKRSLSKI CPLPLATYSEATE" misc_feature 1227..1670 /gene="LOC123003484" /note="Protein of unknown function (DUF1759); Region: DUF1759; pfam03564" /db_xref="CDD:281552" misc_feature 2241..2693 /gene="LOC123003484" /note="Cellular and retroviral pepsin-like aspartate proteases; Region: pepsin_retropepsin_like; cl11403" /db_xref="CDD:472175" misc_feature order(2283..2285,2289..2291,2295..2297,2364..2372) /gene="LOC123003484" /note="inhibitor binding site [active]" /db_xref="CDD:133137" misc_feature 2283..2291 /gene="LOC123003484" /note="catalytic motif [active]" /db_xref="CDD:133137" misc_feature 2283..2285 /gene="LOC123003484" /note="Catalytic residue [active]" /db_xref="CDD:133137" misc_feature order(2364..2375,2385..2396) /gene="LOC123003484" /note="Active site flap [active]" /db_xref="CDD:133137" misc_feature 3129..3773 /gene="LOC123003484" /note="conserved catalytic core domain of RNA-dependent RNA polymerase (RdRp) from the positive-sense single-stranded RNA [(+)ssRNA] viruses and closely related viruses; Region: ps-ssRNAv_RdRp-like; cl40470" /db_xref="CDD:477363" misc_feature order(3315..3332,3432..3437,3540..3542,3546..3551, 3759..3764) /gene="LOC123003484" /note="active site" /db_xref="CDD:238822" misc_feature order(3315..3332,3432..3434,3546..3548) /gene="LOC123003484" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:238822" misc_feature 3435..3437 /gene="LOC123003484" /note="nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:238822" misc_feature 3816..4337 /gene="LOC123003484" /note="Pao retrotransposon peptidase; Region: Peptidase_A17; pfam05380" /db_xref="CDD:461634" misc_feature 5013..5183 /gene="LOC123003484" /note="Integrase zinc binding domain; Region: Integrase_H2C2; pfam17921" /db_xref="CDD:465569" misc_feature 5874..6137 /gene="LOC123003484" /note="Family of unknown function (DUF5641); Region: DUF5641; pfam18701" /db_xref="CDD:465838" ORIGIN 1 cggacgtttg ctgtagttga gagaacataa acccaccact ctgttataac cgagttttat 61 gtaaagggag tcacaagaga gagaacgatc gacgattctt ttatgggcat cgaacagaag 121 cagtcatccc agccgctggt cgcgtttaat aatctaatat aataaattaa aattgatacc 181 attgtcagca ttgaagattg taaagtgaaa aaactgaatt cgaagtaatt gtagataata 241 aatagaccat ccatgaagtg caccttttag agttataatt ttcaaattgg tggaaaaacc 301 ccagagcatc tttgctcatc tttgacaata taaattgtca caacattttg gtggcccatg 361 aggggaccca tccaatcacg ccttctggaa taattatcta ctaatctgtt ttcgaattaa 421 ttaatcagtt tggatctaaa ctttgtgaaa tctggcacat ggttataaat tttccattcg 481 caactacata taaccagcaa acggcagcac atgtataagt gctgttacac tatcgtccca 541 tacgctttac cctccaactg cgctgccctg ccgatccatc gctttgccga agtcaacgtg 601 ggttaattta gatgctggag agaagctgtt tcgctgccga aatctatcac gtcgcatccc 661 ccacaccttt tcgtcaaacc tggagcgact tcacttggac ttccagactt ttcgttcaat 721 ttcgttacgt cacaacttga aagggtgtat aagagtaata caatcaaagc tgaaacatgg 781 cagcagataa agaccaggag caggggcagg catccagcga tgccagccta tcaaacctac 841 atatacttca agctgatatt tttgaacgtg ttaaacaact ttatcaaaat tttaaaaagg 901 atagtcagtc aagaaaaact aaaatctatt ttcaaactcg tataaataaa cttgaaaatt 961 tctcaaagga attcgacacc aatcatcaaa ctcttttatt gaacggttgc tcacctgaac 1021 atgaatattt tacctctcaa ctagcagcaa ggtttgaaga gtcttactta acatattatt 1081 gcgagattgg agacgccttc gagacccggt ttccaacagt tcccagcgac gctactccta 1141 gccattctaa ttcaacgatg cacaacacca ccatgctaca agcgcctggc tctacagttc 1201 aactaccaaa attaccagta cctagttatt ctggcaagct gactgaatgg ccagcctttc 1261 atgatgtctt tcaacaactt attcacgata atggtgcact ttccagcata caaaaattcc 1321 actttctgaa gcaagcactc ccagcggacc gagatcaaga cgtgcatcaa atggacttga 1381 ctgaagcgaa ttatctcgtc gcctggagtc tcattgttac gcgttataat aatccccgat 1441 tgttattcat gcatcatatg aataccctat atgagttgcc atcaatttcc aaagaaagtt 1501 cagccgaact aaaacatatg ttaaacgttg ccaacgtttg catcaatgag ttcaaacgcc 1561 tcaacattgc aattgccaat tgcgatcatt ggattgtgca tcatctcacc actaagctgc 1621 catcgcaaac tatccaagcc tgggaacaca gtcttgggag tacaaaggaa atcccaacct 1681 ttttcacttt ggaatcattt ctcaacaacc gactttttag catcgatata attgaaggtc 1741 gcaaggttcc acctccacca cggcaaccac aaggagtcaa cggcttccaa cgaaacgtca 1801 tcaaacattc aggcaacgca caaaccagga tcagtagctg ccatacttca ggggttacta 1861 ccaactctgt tcgctgcgct cattgcaatg accaacacat cttacgtcgt tgtccagact 1921 ttttagcaaa ggattctttc gctcgcaaac ttattgttga ccgcagtaag gtatgtctca 1981 attgcctcag ccccacccat tctctgtcaa aatgtaacag cagcaaaaac tgtttacaat 2041 gtggacaacg ccatcacact ctcttacatt tcccaaccca ggtaaaggct agtgatgtcg 2101 cgcagtctgc aggaaacata actagtctca actcacaggg tctgacagca tctagcaaca 2161 ccacacagct catcagcgcg tcagcctcac attcaacacc tcatacgatg attctcgcaa 2221 ctgctctggt tcgtcttcat agtaatgcca caggtcagtc agcggtggtc cgagccctta 2281 tcgatcatgg atcagaaggt acccttgtta cggaaactgt agtccaagcg ctagggcttc 2341 cccgatttcc agtctcagca gaaatatcag gggtaggagg gaattccacc aacaggtgca 2401 aatatcgcac cgaatgtact ttaagctcaa ctactaattc aggattcaag atgtgggtgg 2461 aaaatgcctt cgttttgcgt accctgactt ctcctttacc aaggacgaat ctaactctac 2521 caacgtgtcc acatttaact gggttggagc tcgccgaccc aaattttatg cacactaata 2581 gcatagatgt gctcctcggc gtggacacca ttccacaatt tatgatgagt ggaatcagga 2641 gaggatctta cgatcaacca attgcccaat gcacgcaact tggttggatc atttttggca 2701 gaattacgcc aaaacagaca cacacgatat ccatacaatg tcatcattct aatctggaaa 2761 ctctagttca aaaattcttc gaattggaag cagtaagtac aacccgtctc tacactgcgg 2821 aagaacaatg gtgcgaagac cactttaaac gcactcatat acgccaacca aatggaaagt 2881 acatggtgcg cctaccattt aaaaccttat ttgatcctaa ccaaaccata ggaaaatcaa 2941 aacaaactgc cctaaatcgg tttcattttt tacagcgaaa attccaaaag aaaccagatc 3001 tgtatgaaca atactcaaag gtcatggagg aatacttcga gctgcaccaa ataactgaag 3061 ccatcacctc agaagaacag catcgcctgg cggacaaagg aggctcaatc agttatactg 3121 catgcacatt accccatcat gcagttctga aggcggacag cagcaccaca aaacttcgag 3181 ttgtgtacga cgcctcatgc aagacatcaa atggaaaatc gctcaacgac attctctgta 3241 taggcccagc cttacaaaac gaccttggtg gggtcattct caattggcga tttttacaat 3301 atgtctttgc ggccgatatt cagaaaatgt atcgttgcat cgatgtacac ccggaggata 3361 cacacttcca acggattatt tggcaaaggg aaaacaatgc tataaaggat tattgtttaa 3421 caactgtgac gtttggaaca gcatcagccc cgtacacagc cattcgcatc atgcatcaga 3481 tcgctcagga tgaacgagat caatttccat tagcagaaca tgttttacga aaagaaatat 3541 atgtggatga tttgcaaagt ggacatgaga caattaaggg agcccttcaa gttcgagatg 3601 atgtcatcgg ggcacttcaa tcagctggta tggagcttcg aaaatgggca gcaaatcatc 3661 ccagtctttt gaactctatt cctcctgagc acatgtccaa ttccaaaatt ttggaaatcg 3721 aaaaccaaga gtccattaaa actttggggc tatattggca ccccaaggaa gacttttatg 3781 gtttcaaatt aaaatttaca attgatgaaa ttttcactaa acgatcaatt cttgctacag 3841 ttgcacgtct gtacgatcct ttaggtttcg ttgctccagt cataatcatc gccaaggtta 3901 ttctcaaaga agtctggagc atacgtattc aacaggctga tggcactcca gcaggattag 3961 cttgggacgc aacggtaccg ccagtaattc agcacaagtg gaaagaatac tgcaccaatt 4021 tacttaaaat tgaatcactg agaatacccc gatggttaca gtatttaccc agcaccatcg 4081 catccttgca gctgcatatc ttttgtgatg gctcttctat ggcatacgca gcgtgtgcct 4141 atgtgcgggt ccaacataca aataactcgg tatacacgca tctcatagct gcaaagagtc 4201 gagtcacacc cacaaagccg ttgacaattc ctagagtgga actatgtgga gctgtactcg 4261 ccgcacaact gggtgactgg ctctgcaagc aaatagatca accaacgcat cccatttcga 4321 cctatttctg gagcgacgca acgatcgttc tttattggat tgcgggggat cccttacatt 4381 ggaaaacatt cgtagcgaat cgtgtaggac gaattttgga gtccagttct gcatctcaat 4441 ggagacatgt gcccaccgga gataaccctg cagactgcgc gacgcgtggt ctctatccag 4501 atcaattagc tgcctatgat ttatggtggc aggggccttc ttggctacga ctaccagaat 4561 ctcaatggcc tagcaaaatc tttgacattc ctgatagcac caatctctcg tgtgagcaaa 4621 aatcgctttc tctacaaacc cacagctgcg ttgagagaaa tccaaactct ttactcacgt 4681 cgttttcatc ttacaacaaa cttctgttta taatggctta cgtacgacgc tttattcaca 4741 attcacaaac gcgcgtggac tctcgacaga gaggtccagt taccgcccag gagtttcagc 4801 aggcactagg gcacattgtc cgactagtgc aacatgaaac gtttaaggtg gagattcaaa 4861 aaataaagac aaaaacacat ttatctagat cgaacaaatt aagtcaactt tccccatttc 4921 tagataacga aggagtgctg cgtgtccgag ggagattgaa aaatgcattg cacctatcgc 4981 cgcatcaacg cacaccgatc attttgccaa aggatcatca ttttaccgaa cttgtcattc 5041 gtaatgctca tctcaacaca ttacatggcg ggatatcact tacactggca gtgacaaggc 5101 aaacgttttg gattcttaat gggaaacagg cagttaaaaa gattctgcac aaatgtgttg 5161 actgcttcaa gcacagaccg aaggcagtca cgcagctcat gggagacctt cccttacatc 5221 gagtgaaccc accaaagcga gcctttgaag ccacaggcgt ggactatacc ggtgcgctag 5281 aaatcaaagc gtcaaagttt cgtggacacc acaaatacaa ggcatatatt gcagttttta 5341 tatgcttggc gacaaaggca gtccacttgg aagctgttac cggattgtct tctcaggatt 5401 ttttgtgggc tctacaacgt tttattggca gacgtggata ctgccaacac atctacagcg 5461 attgcggtac caatttcatt ggagcagata aatccctaaa cctttggcat gaagagtttc 5521 gacaaagcgt tatcgcaacg gttattccaa aattaaccgc tcagcagatt caatggcatt 5581 tcaatccgcc acacagccca aacttcggtg gattatggga ggcgaatgtt aaagcggtta 5641 agacacactt acatcgcacg tgtaaagggg cgctcatgac ctacgaacaa ctctcaacta 5701 ttttggttca aatcgaagcc tgtttgaact ctcgcccact ttgcccgttg agctcggata 5761 tggaggattt agcagtactg acaccggccc atttcttaat tggcgattcc atgatggcgc 5821 tacctaatcc atcagcttcg gataaatcgt taaacgcaca attcttggaa ggacaaagac 5881 tgcttcgaac cttttggcat cgttggagct cggattggct ttcacactta caatctcgtc 5941 caaaatggca gcgggttgag gaaaacttgc gtttacacga catagttatt attaaagatg 6001 atcggcttcc gccaaatgaa tggaagctcg gtcgcatagt cgaattacat ccaggatctg 6061 ataatctcat tcgagtcgca tctattaaga cggcatccgg aatttataaa cgctctttgt 6121 cgaaaatctg tccattgcca ttagctactt attcagaggc tacggaataa acattaatta 6181 cgtacatact ttgtccacct ctacatatcg taatgacact tatttcttta cagcaaagtg 6241 cagaaatttg gtttaaatac tggactcagt atttgggggc ggcatgttcg gacgtttgct 6301 gtagttgaga gaacataaac ccaccactct gttataaccg agttttatgt aaagggagtc 6361 acaagagaga gaacgatcga cgattctttt atgggcatcg aacagaagca gtcatcccag 6421 ccgctggtcg cgtttaataa tctaatataa taaattaaaa ttgataccat tgtcagcatt 6481 gaagattgta aagtgaaaaa actgaattcg aagtaattgt agataataaa tagaccatcc 6541 atgaagtgca ccttttagag ttataatttt caaattggtg gaaaaacccc agagcatctt 6601 tgctcatc