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LOCUS XM_044395786 4265 bp mRNA linear INV 09-DEC-2024 alpha3 (nAChRalpha3), transcript variant X1, mRNA. ACCESSION XM_044395786 VERSION XM_044395786.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044395786.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4265 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4265 /gene="nAChRalpha3" /note="nicotinic Acetylcholine Receptor alpha3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 93 Proteins" /db_xref="GeneID:108054798" CDS 988..3387 /gene="nAChRalpha3" /codon_start=1 /product="acetylcholine receptor subunit alpha-like" /protein_id="XP_044251721.1" /db_xref="GeneID:108054798" /translation="MKWFQVTIDMILVLSFISSSTANPDAKRLYDDLLSNYNKLVRPV VNVTDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHV PSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFD EQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLSEFYTSVEWDILEVPAVRNE KFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLS ISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSPQ THTMAPWVRTVFINQLPRFLVMRRPLYPISEMIKSSRRLMVRTCNGLELRDQIPPLPP PVALSRMHHSPKTTSRSTSPHLQHRAQTYNLMDECGMGGMGGMGGGGGASTITGHLSS LYPPTMSTANQQTSTTSSLIDAQYHNQYQQTGGSLLDHPLTPTKFRQMTSTSSQTGQN GNGNGGGNGGGGGGYGGHNLYRQQSSCSANFSPLPQHAHQAHASTTTSDLGMANPNVI KSTTTVNSVATASTLAESCCSGTIQIHQGMGAGAACQSSELLHHQQLHHQQMHHQQQQ QQYQQRPTTSAAAAAAAAAAAAAAGGGPSTSAAAAAAAAAAAAGTPPPPPPPAGVCDI LPACQREGGPHCCSGRGNVRQRWHTCPELHKAMDGVTYIADQTRKEEESTRVKEDWKY VAMVLDRLFLWIFTIAVVVGTAGIILQAPTLYDTRMPIDIKLSEIASTTAKPNVARPV L" misc_feature 1060..1716 /gene="nAChRalpha3" /note="extracellular domain of nicotinic acetylcholine receptor subunit alpha-like found in protostomia; Region: LGIC_ECD_nAChR_proto_alpha-like; cd19031" /db_xref="CDD:349832" misc_feature order(1168..1170,1174..1176,1192..1197,1216..1218, 1282..1284,1288..1290,1315..1320,1324..1326,1330..1335, 1345..1347,1351..1356,1366..1374,1378..1380,1408..1410, 1414..1416,1420..1422,1432..1434,1498..1500,1705..1707) /gene="nAChRalpha3" /note="pentamer interface [polypeptide binding]; other site" /db_xref="CDD:349832" misc_feature 1435..1479 /gene="nAChRalpha3" /note="Cys-loop [structural motif]; Region: Cys-loop" /db_xref="CDD:349832" misc_feature 1711..>1980 /gene="nAChRalpha3" /note="transmembrane domain of nicotinic acetylcholine receptor (nAChR); Region: LGIC_TM_nAChR; cd19064" /db_xref="CDD:349866" misc_feature 1711..1785 /gene="nAChRalpha3" /note="TM1 helix [structural motif]; Region: TM1 helix" /db_xref="CDD:349866" misc_feature order(1807..1809,1816..1818,1828..1830,1837..1842, 1849..1851,1861..1863,1945..1947,1954..1956,1963..1968, 1972..1980) /gene="nAChRalpha3" /note="pentamer interface [polypeptide binding]; other site" /db_xref="CDD:349866" misc_feature 1807..1872 /gene="nAChRalpha3" /note="TM2 helix [structural motif]; Region: TM2 helix" /db_xref="CDD:349866" misc_feature 1903..1971 /gene="nAChRalpha3" /note="TM3 helix [structural motif]; Region: TM3 helix" /db_xref="CDD:349866" misc_feature <3046..3279 /gene="nAChRalpha3" /note="Neurotransmitter-gated ion-channel transmembrane region; Region: Neur_chan_memb; pfam02932" /db_xref="CDD:460753" ORIGIN 1 atttatacat ttttccgttt tacgttcagc tgagcgagac caacccaaag tttttttctc 61 tttttttaat gttctaaact aaacaaaaaa aaacataaaa aaacgaaaaa aaatatagaa 121 aaaaccaggc tgaaacttca aaacaaatat tggaaaattc cgataaaaaa ggtggcttgt 181 aagccgaagg aaccgaatgc aaattgaaaa ctaaagttcg aggaagccag aaaccaaaac 241 aaggaagcga gctcctgtcc gtgtgaagga cgacgtcggt ctgtgtgcgt gtgtgtgggt 301 gcggggacac cactacagcg gcagacgaaa tactttttgt gccaaggact cgctccacca 361 cccagccctc tccctttcca ctcttcgcgg aacaaagaac agatggagga ggagcccagg 421 aatgaggcga tgtgaagcaa aaggacaacg aggacaacaa ggagcaaaac aaaggcaagg 481 ccgggaggag gccactaaaa ggagaacata catttgaaga attttaatcg aaaactgcca 541 agaaacaaat atatttacaa atatatttat atatagatac ctagtaaacc aaaacgtaca 601 tacaaacata aacataaata taaatataaa tatatatata ttatatagag agaaatatgt 661 tatatttact atggaaacga tacccagaat aataatcgat gtaaataaat gctgccaatt 721 cgaggacact gcgaattaaa accgcaactg agatgcataa aacgcacaac aacaacatca 781 agagaaaccc gcatgagaaa cacatgaaga aaaggttcac ttctcccgcg acagccgcgc 841 ctgcgcccta aaatcgatcg gtctggatat cgaatatatc gataatatcg aaagaggaac 901 attcggagga gccgccagaa ggggattaca tatagggcag atccaccacc gcagcacagg 961 cagaaaaagc gtgcagaggg aaatgagatg aagtggtttc aagtgaccat agatatgatt 1021 cttgtgcttt catttatatc aagcagcaca gcgaatccgg atgcgaaacg attgtacgac 1081 gatttgctga gcaactacaa caaactggtc cgcccggtgg tcaatgtgac ggacgccctc 1141 accgttcgca tcaagctgaa gctctcccaa ctgatcgatg tcaacctgaa gaaccagatc 1201 atgaccacca acctgtgggt ggagcagtcc tggtacgact acaagctcaa gtgggagccc 1261 aaggagtacg gcggcgtcga gatgctccac gtcccctccg atcacatttg gcgtccggac 1321 atcgtcctct acaacaacgc cgacggcaac tttgaggtga ccctggccac caaggccacg 1381 ctaaattaca cgggacgcgt cgagtggcga ccgccggcca tttacaagag ctcctgcgag 1441 atcgacgtgg agtactttcc cttcgacgag cagacctgcg tgatgaagtt cggcagctgg 1501 acctacgacg gctttcaggt ggatctgcgg cacatcgacg agctgaacgg caccaatgtc 1561 gtggaggtgg gcgtggatct gtccgagttc tacacgtccg tcgaatggga tatcctcgaa 1621 gttcctgcag tgcggaacga gaagttctat acgtgctgcg atgagccata tctggacatc 1681 accttcaaca tcacgatgcg ccgcaagacc cttttctaca cggtcaacct gatcatcccc 1741 tgcatgggca ttagcttcct caccatcctc gtgttctacc tgccatcgga cagtggcgag 1801 aaggtctcat taagcatatc cattctgctg tcgctcactg tgttcttcct gctcctggcg 1861 gaaatcattc cgcccacatc gctggtggtg ccgctgctgg gaaagttcgt gctcttcacc 1921 atgatactgg ataccttcag catctgtgtg actgtgttgg tgctgaacat ccacttccgg 1981 tcgccgcaga cgcacacgat ggctccttgg gtgcggaccg tgttcatcaa ccagctgccc 2041 cgcttcctgg tcatgcggcg tccgctctat ccgatcagcg agatgataaa atcctcgcgc 2101 cgcctaatgg tgcgcacctg caacggactc gaactgaggg atcaaatacc accgctgcca 2161 ccgccggtgg ccttgtctcg tatgcaccac agcccgaaga cgacatcgcg cagcacctcg 2221 ccccacctgc agcaccgcgc gcagacctac aacctgatgg acgagtgcgg catggggggc 2281 atggggggca tgggcggggg agggggcgcc tccacgatca ccggccacct gagctccctg 2341 tatccgccga cgatgtcgac ggccaaccag cagacctcga ccacgtcctc gctgatcgac 2401 gcccagtacc acaatcagta ccagcagacg ggcggctcgc tgctggacca cccactgacg 2461 cccaccaagt tccgccagat gacctcgacc tccagccaga cgggtcagaa tgggaatggg 2521 aatggcggag ggaacggggg cggtggcggt ggctacgggg gccacaacct gtaccggcag 2581 cagtcgagct gctcggccaa cttctcgccg ctgccgcagc acgcccacca ggcgcacgcc 2641 tccaccacca ccagcgacct gggcatggcc aatccgaatg tgataaagtc gacgacgacg 2701 gttaactcgg tggccaccgc ctccacgctg gcggagtcct gctgcagcgg caccatccag 2761 atccaccagg gcatgggcgc cggggcggcc tgccagtcgt cggagctgct gcaccaccag 2821 cagttgcacc accagcagat gcaccaccag cagcagcagc agcagtacca gcaacgaccc 2881 accacctcgg cagcagcggc ggcagcggca gcggcggcgg cggcggcagc aggaggcgga 2941 cccagcacct cggcggcggc agcagcggcg gcagcggcag cggcggccgg aacgccaccc 3001 ccaccgcctc cgccggcggg cgtctgtgat attctgcccg cctgccagcg cgagggcggc 3061 ccgcactgct gctcggggcg tggcaacgtg cgccagaggt ggcacacctg ccccgagctc 3121 cacaaggcca tggacggggt cacctacatc gcggatcaga cgcgcaagga ggaggagagc 3181 acaagggtga aagaggactg gaagtacgtg gccatggtgc tcgaccgcct gttcctgtgg 3241 atcttcacaa tagccgtggt cgtcggcacc gccggcatca tcctgcaggc tccgacgctc 3301 tacgacaccc ggatgcccat cgacataaag ctatcggaga tcgcctcgac gacggccaag 3361 cccaatgtgg ccaggcccgt gttgtaagcg tatcgatatg tatcgatccg tcgatcgata 3421 tccagtattc cggagaacac acaccacaca cagtctgaag aagccaacaa aagcaaaaca 3481 caagtaatga atgaaattcg catttgtttt ttctttaacc agagagaaag gggatacaaa 3541 accaaaaaaa aaaataatta ccaaaaaaac ttgttccaca aaaacagaat aacagaaacg 3601 acgacgagaa tccaagtaac tataactata ataaattgta tttgttgtat acataaaagg 3661 tataactaac tataaataat ttgtacacta atgtttaaac aggcaaacga tgctaaacaa 3721 aacggttttt ttttctaggc aacgtaaatg aacagagaca aaaaagtgac gacaaaacaa 3781 aaaaccaaac aaacgaacaa aataagtaag taaaccaatt caactgaaac gaagcgcaaa 3841 atagtatgca acagataaat aaatacgatt tatggtaata attgagagcg aaattaaatt 3901 agtgaaatta aattagccta gccaaacatc aagaataacg aaataatgca aaaaaaaaaa 3961 gaaagaaaaa gaaagcgtat ttgttgaaca agaaaacgaa gagaaggggg acaacattag 4021 ttagctaagc gaaccaaaat aaaggaacag gaaaaagcca acaaaaaagg cgtatatgta 4081 tatgtatgtt tttgtgcacc gagagaaagc ggaggaaaga aaccgaaaat tcagtgattt 4141 aaaaagtttt ctgcccctgg aaataatatt caacctacag atccatttaa ataacctaaa 4201 ataataattt taatattttg tatatatttt ataagttttt atataaaatg ttgcaaacaa 4261 aactt