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LOCUS XM_022371727 3192 bp mRNA linear INV 14-MAY-2021 WW and PDZ domain-containing protein 1 (LOC111077450), mRNA. ACCESSION XM_022371727 VERSION XM_022371727.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq; corrected model. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022371727.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-522 JAECWW010000165.1 1055532-1056053 523-778 JAECWW010000165.1 1064824-1065079 779-895 JAECWW010000165.1 1065081-1065197 896-1029 JAECWW010000165.1 1065260-1065393 1030-1915 JAECWW010000165.1 1065454-1066339 1916-2227 JAECWW010000165.1 1066405-1066716 2228-2434 JAECWW010000165.1 1067896-1068102 2435-2815 JAECWW010000165.1 1068170-1068550 2816-3192 JAECWW010000165.1 1068552-1068928 FEATURES Location/Qualifiers source 1..3192 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..3192 /gene="LOC111077450" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns" /db_xref="GeneID:111077450" CDS 560..2938 /gene="LOC111077450" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons" /codon_start=1 /product="LOW QUALITY PROTEIN: membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1" /protein_id="XP_022227419.2" /db_xref="GeneID:111077450" /translation="MMTMTATSASISTSASASTDCSSSMQGSTTSSASSDVMTLTTTA ASSWCAIPTSSRLRVLRLVRPHQRRLLVGGPERASTYGFAVRGGREHGTGFFVSHVEH GGEAQLKGLRIGDQILRINGFRLDDAVHKEFIQLVGSQDRVTLKVRGVGMLPVRDQPE ERLSWSVVKLPSVSGTPSESSFKADRRSASRDISVVLHVAPRTKLGLGICKGPEWKPG IFVQFTKERSVAREAGLRPGDQILSVNSIDFSDVLFSEAVAVMKSSSKLDMVVRTAAG CDLFPGESSGYNSSASSVTGDQSPCWADAKSKRLTAVREEAVPGGAASGSPAAWSQAQ VQGKQLNKTIIKLSENGTSINNTFIASHSSSSCSSATDKPQSRTRTAPHSSVMRRSSH QRTPAEGSAASAGGGCAPIPPPPKTAMNEASGSGASEGAAAAGGSSLSSAITEELKKR KEKQQQQQQRNNRELNQIAHNGSSSSSSSHSHSHSHRNSSSSSSHAVAQVSHRHRGNA GGGGGGAVAAPPTGGTANGGDQHTALMDEFKRAHQRMFRNGFHESEHKERGETLKRTS IMPDDSCYRNSTASTSTSNSNSNSKVNSRTAVATQKNSSQHGVTNGAAASNGTPELPP PPPQFANPQPRPQMLKLANDNGNSNGNIVGNGMASKIKQPMSPMRSASISVGGFRPPA TPQPDYDAVQLRGNHGTIASSPAATYPTTAAAAAAASLQQQQQQRRTLRLGTVTIGEY GEQRTKRETLRKVNVGDTTVATLSSNGILKNGSSRSSASFSQHGEKTIKFGN" misc_feature 725..1012 /gene="LOC111077450" /note="PDZ domain 1 of harmonin isoforms a, b, and c, and related domains; Region: PDZ1_harmonin; cd06737" /db_xref="CDD:467219" misc_feature order(797..817,851..853,860..862,947..949,959..961, 968..973) /gene="LOC111077450" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467219" misc_feature 1130..1375 /gene="LOC111077450" /note="canonical PDZ domain; Region: PDZ_canonical; cl49608" /db_xref="CDD:483948" misc_feature order(1169..1189,1223..1225,1232..1234,1319..1321, 1331..1333,1340..1345) /gene="LOC111077450" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467153" ORIGIN 1 tcgtttcgct gtttcgcggt ggcttcactc aacaaattag ttcgctggtg catagtgttt 61 atgagtgaaa taacaacagc attgtgtgca catgtacttt cctgatactg gctgattttt 121 tttgtttgtt tactgtgcaa ctgttattca aattttgccg aaaggaaagg catatcgaaa 181 gtgttgaaag agttttcagt tttccactgc acctgtcctg ccgtctcact tgagtgcgct 241 cgcactcgca agccacaaaa gtgtaaagtg catgcggcag ccgtagcttt tgttgctatt 301 cgcgtcgctg aatctgcgat tcccgcgcca ccgccaccag attctccgaa ccaagaattt 361 gcgcttcttt gtgattgttg ccgcgctcta attgcaagag tttcgcgtgt gtgttgctct 421 tttttttttt tggtgttttg ttttttgatt tttttgtttg gctctcctta actttaatac 481 ttgtgcttct tcttttggac gccccaccgc accgcaaatg agcagcctgc actgaacctg 541 aacctgaacg cgttccacaa tgatgacgat gactgcaact tcggcctcga tatcgacatc 601 ggcatcggca tcgacggact gcagcagcag catgcagggc tccacgacca gttcggcgtc 661 cagcgatgtg atgacactga ccacgacggc cgcctcctcg tggtgcgcca tccccacgag 721 ctccaggctg cgggtgttgc gacttgtgcg tccgcatcag cgccgccttc tggtgggcgg 781 cccggagcgt gccagtacgt acggctttgc ggtgcgtggc ggccgggagc acggcacggg 841 cttctttgtc tcccacgtgg agcatggcgg cgaggcgcag ctaaagggat tgcggattgg 901 cgatcagatc ctgcggatca atggctttcg gctagacgat gccgtgcaca aggagtttat 961 tcagctggtg ggcagccagg accgggtcac gctcaaagtg cgtggcgtgg gcatgctgcc 1021 agtcagggac cagcccgagg agcgtctgtc gtggagcgtg gtgaagctgc ccagcgtcag 1081 tggcacgccc tcggagagct cgttcaaggc ggaccggagg agcgccagcc gcgacatcag 1141 cgtggtgctg cacgtggcgc cgcgcaccaa actgggcctg ggcatctgca aggggccgga 1201 gtggaagccg ggcatcttcg tgcagttcac caaggagcgg agtgtggcgc gagaggcggg 1261 gctgcggccc ggcgatcaga tcctcagcgt gaacagcatc gacttctcgg acgtgctctt 1321 cagcgaggcg gtggccgtga tgaagagctc cagcaagctg gatatggtgg tgcgcaccgc 1381 cgccggctgt gacctctttc cgggcgagtc gagcggatat aacagctcgg ccagttccgt 1441 gaccggcgat cagagtccct gctgggccga tgccaagtcc aagcggctga cggcggtgcg 1501 tgaggaggcg gttccgggtg gtgcagcttc tggttcgccg gctgcctggt cgcaggccca 1561 agtccagggc aagcagctga acaagaccat catcaagctg tccgagaacg gaacctccat 1621 caacaatacg ttcatagcca gccactccag ttccagttgc agttccgcaa cggacaagcc 1681 gcagtcccgc acacggacgg caccacacag cagcgtcatg agacgtagca gtcaccagag 1741 gacaccagca gaaggatcag cagcatcagc tggaggagga tgtgcaccta ttccaccccc 1801 accgaagaca gcaatgaatg aggccagcgg ctcaggcgcc agcgaagggg ctgctgctgc 1861 tgggggtagc agcctctcca gtgccataac cgaggagctc aagaagcgca aagagaagca 1921 gcagcagcag cagcaacgca acaatcgaga gctgaatcag atcgctcaca atggcagcag 1981 cagcagcagc agtagccaca gccacagcca cagtcaccgc aacagcagca gcagcagcag 2041 ccatgcggtt gcccaagtgt cgcacaggca tcggggcaat gcaggaggag gaggaggtgg 2101 agctgtagca gcaccaccaa caggtggaac agcgaatgga ggcgatcagc acacggcgct 2161 gatggatgaa ttcaagcgag cgcaccagcg catgttcagg aacgggttcc atgagagcga 2221 gcacaaggaa cgcggtgaga cactgaagcg cacctcgata atgccagacg atagctgcta 2281 tcggaacagt accgccagca ccagcaccag caacagcaac agcaacagca aagtaaacag 2341 ccgcacagca gtagccacac agaagaattc cagtcagcat ggcgtcacga atggagcagc 2401 ggccagcaat gggacaccgg aactgccgcc accgccgcca caatttgcca atccacagcc 2461 tagaccacaa atgctgaagc tagccaatga taatggaaat tcaaatggaa acattgttgg 2521 caatggaatg gcatccaaaa ttaaacagcc catgtcaccg atgcgcagtg ccagcatcag 2581 tgtgggcggc tttcggccgc cggccacacc acagcccgac tacgatgccg tccagctgcg 2641 gggcaaccat ggaaccatag catcatcccc agcagcaaca taccccacaa cagcagcagc 2701 agcagcagca gcatcactgc agcagcaaca gcaacagcga cgaaccctgc gtctgggcac 2761 agtcaccatc ggggagtacg gagagcagcg aaccaagcgg gagacgctga ggaaagtgaa 2821 cgttggcgac acgacggtgg ccacgctcag ctccaatggt atactgaaga acggttcgag 2881 tcggagcagc gccagcttca gtcagcacgg ggagaagacc attaagtttg gcaactgacg 2941 ccacgcagat ccgtgctatc agcaatactt ttgtgcaata cgctcgacgg agaagagtac 3001 aaaactggac gtgcagaggc ggcattccca tgtgcacatc gtacatatta ccgcatatta 3061 cttatgtctt ttttttacaa taataatagg gttttttttt gtgcgatttg ttgagctttc 3121 gaaatggaaa agatgtacga ttagttttta ttattattcg atgtactctg taaataaaat 3181 atataaattc cg