PREDICTED: Drosophila obscura membrane-associated guanylate kinase,
LOCUS XM_022371727 3192 bp mRNA linear INV 14-MAY-2021
WW and PDZ domain-containing protein 1 (LOC111077450), mRNA.
ACCESSION XM_022371727
VERSION XM_022371727.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq; corrected model.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022371727.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
frameshifts :: corrected 2 indels
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-522 JAECWW010000165.1 1055532-1056053
523-778 JAECWW010000165.1 1064824-1065079
779-895 JAECWW010000165.1 1065081-1065197
896-1029 JAECWW010000165.1 1065260-1065393
1030-1915 JAECWW010000165.1 1065454-1066339
1916-2227 JAECWW010000165.1 1066405-1066716
2228-2434 JAECWW010000165.1 1067896-1068102
2435-2815 JAECWW010000165.1 1068170-1068550
2816-3192 JAECWW010000165.1 1068552-1068928
FEATURES Location/Qualifiers
source 1..3192
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..3192
/gene="LOC111077450"
/note="The sequence of the model RefSeq transcript was
modified relative to its source genomic sequence to
represent the inferred CDS: deleted 2 bases in 2 codons;
Derived by automated computational analysis using gene
prediction method: Gnomon. Supporting evidence includes
similarity to: 1 Protein, and 99% coverage of the
annotated genomic feature by RNAseq alignments, including
10 samples with support for all annotated introns"
/db_xref="GeneID:111077450"
CDS 560..2938
/gene="LOC111077450"
/note="The sequence of the model RefSeq protein was
modified relative to its source genomic sequence to
represent the inferred CDS: deleted 2 bases in 2 codons"
/codon_start=1
/product="LOW QUALITY PROTEIN: membrane-associated
guanylate kinase, WW and PDZ domain-containing protein 1"
/protein_id="XP_022227419.2"
/db_xref="GeneID:111077450"
/translation="MMTMTATSASISTSASASTDCSSSMQGSTTSSASSDVMTLTTTA
ASSWCAIPTSSRLRVLRLVRPHQRRLLVGGPERASTYGFAVRGGREHGTGFFVSHVEH
GGEAQLKGLRIGDQILRINGFRLDDAVHKEFIQLVGSQDRVTLKVRGVGMLPVRDQPE
ERLSWSVVKLPSVSGTPSESSFKADRRSASRDISVVLHVAPRTKLGLGICKGPEWKPG
IFVQFTKERSVAREAGLRPGDQILSVNSIDFSDVLFSEAVAVMKSSSKLDMVVRTAAG
CDLFPGESSGYNSSASSVTGDQSPCWADAKSKRLTAVREEAVPGGAASGSPAAWSQAQ
VQGKQLNKTIIKLSENGTSINNTFIASHSSSSCSSATDKPQSRTRTAPHSSVMRRSSH
QRTPAEGSAASAGGGCAPIPPPPKTAMNEASGSGASEGAAAAGGSSLSSAITEELKKR
KEKQQQQQQRNNRELNQIAHNGSSSSSSSHSHSHSHRNSSSSSSHAVAQVSHRHRGNA
GGGGGGAVAAPPTGGTANGGDQHTALMDEFKRAHQRMFRNGFHESEHKERGETLKRTS
IMPDDSCYRNSTASTSTSNSNSNSKVNSRTAVATQKNSSQHGVTNGAAASNGTPELPP
PPPQFANPQPRPQMLKLANDNGNSNGNIVGNGMASKIKQPMSPMRSASISVGGFRPPA
TPQPDYDAVQLRGNHGTIASSPAATYPTTAAAAAAASLQQQQQQRRTLRLGTVTIGEY
GEQRTKRETLRKVNVGDTTVATLSSNGILKNGSSRSSASFSQHGEKTIKFGN"
misc_feature 725..1012
/gene="LOC111077450"
/note="PDZ domain 1 of harmonin isoforms a, b, and c, and
related domains; Region: PDZ1_harmonin; cd06737"
/db_xref="CDD:467219"
misc_feature order(797..817,851..853,860..862,947..949,959..961,
968..973)
/gene="LOC111077450"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467219"
misc_feature 1130..1375
/gene="LOC111077450"
/note="canonical PDZ domain; Region: PDZ_canonical;
cl49608"
/db_xref="CDD:483948"
misc_feature order(1169..1189,1223..1225,1232..1234,1319..1321,
1331..1333,1340..1345)
/gene="LOC111077450"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467153"
ORIGIN
1 tcgtttcgct gtttcgcggt ggcttcactc aacaaattag ttcgctggtg catagtgttt
61 atgagtgaaa taacaacagc attgtgtgca catgtacttt cctgatactg gctgattttt
121 tttgtttgtt tactgtgcaa ctgttattca aattttgccg aaaggaaagg catatcgaaa
181 gtgttgaaag agttttcagt tttccactgc acctgtcctg ccgtctcact tgagtgcgct
241 cgcactcgca agccacaaaa gtgtaaagtg catgcggcag ccgtagcttt tgttgctatt
301 cgcgtcgctg aatctgcgat tcccgcgcca ccgccaccag attctccgaa ccaagaattt
361 gcgcttcttt gtgattgttg ccgcgctcta attgcaagag tttcgcgtgt gtgttgctct
421 tttttttttt tggtgttttg ttttttgatt tttttgtttg gctctcctta actttaatac
481 ttgtgcttct tcttttggac gccccaccgc accgcaaatg agcagcctgc actgaacctg
541 aacctgaacg cgttccacaa tgatgacgat gactgcaact tcggcctcga tatcgacatc
601 ggcatcggca tcgacggact gcagcagcag catgcagggc tccacgacca gttcggcgtc
661 cagcgatgtg atgacactga ccacgacggc cgcctcctcg tggtgcgcca tccccacgag
721 ctccaggctg cgggtgttgc gacttgtgcg tccgcatcag cgccgccttc tggtgggcgg
781 cccggagcgt gccagtacgt acggctttgc ggtgcgtggc ggccgggagc acggcacggg
841 cttctttgtc tcccacgtgg agcatggcgg cgaggcgcag ctaaagggat tgcggattgg
901 cgatcagatc ctgcggatca atggctttcg gctagacgat gccgtgcaca aggagtttat
961 tcagctggtg ggcagccagg accgggtcac gctcaaagtg cgtggcgtgg gcatgctgcc
1021 agtcagggac cagcccgagg agcgtctgtc gtggagcgtg gtgaagctgc ccagcgtcag
1081 tggcacgccc tcggagagct cgttcaaggc ggaccggagg agcgccagcc gcgacatcag
1141 cgtggtgctg cacgtggcgc cgcgcaccaa actgggcctg ggcatctgca aggggccgga
1201 gtggaagccg ggcatcttcg tgcagttcac caaggagcgg agtgtggcgc gagaggcggg
1261 gctgcggccc ggcgatcaga tcctcagcgt gaacagcatc gacttctcgg acgtgctctt
1321 cagcgaggcg gtggccgtga tgaagagctc cagcaagctg gatatggtgg tgcgcaccgc
1381 cgccggctgt gacctctttc cgggcgagtc gagcggatat aacagctcgg ccagttccgt
1441 gaccggcgat cagagtccct gctgggccga tgccaagtcc aagcggctga cggcggtgcg
1501 tgaggaggcg gttccgggtg gtgcagcttc tggttcgccg gctgcctggt cgcaggccca
1561 agtccagggc aagcagctga acaagaccat catcaagctg tccgagaacg gaacctccat
1621 caacaatacg ttcatagcca gccactccag ttccagttgc agttccgcaa cggacaagcc
1681 gcagtcccgc acacggacgg caccacacag cagcgtcatg agacgtagca gtcaccagag
1741 gacaccagca gaaggatcag cagcatcagc tggaggagga tgtgcaccta ttccaccccc
1801 accgaagaca gcaatgaatg aggccagcgg ctcaggcgcc agcgaagggg ctgctgctgc
1861 tgggggtagc agcctctcca gtgccataac cgaggagctc aagaagcgca aagagaagca
1921 gcagcagcag cagcaacgca acaatcgaga gctgaatcag atcgctcaca atggcagcag
1981 cagcagcagc agtagccaca gccacagcca cagtcaccgc aacagcagca gcagcagcag
2041 ccatgcggtt gcccaagtgt cgcacaggca tcggggcaat gcaggaggag gaggaggtgg
2101 agctgtagca gcaccaccaa caggtggaac agcgaatgga ggcgatcagc acacggcgct
2161 gatggatgaa ttcaagcgag cgcaccagcg catgttcagg aacgggttcc atgagagcga
2221 gcacaaggaa cgcggtgaga cactgaagcg cacctcgata atgccagacg atagctgcta
2281 tcggaacagt accgccagca ccagcaccag caacagcaac agcaacagca aagtaaacag
2341 ccgcacagca gtagccacac agaagaattc cagtcagcat ggcgtcacga atggagcagc
2401 ggccagcaat gggacaccgg aactgccgcc accgccgcca caatttgcca atccacagcc
2461 tagaccacaa atgctgaagc tagccaatga taatggaaat tcaaatggaa acattgttgg
2521 caatggaatg gcatccaaaa ttaaacagcc catgtcaccg atgcgcagtg ccagcatcag
2581 tgtgggcggc tttcggccgc cggccacacc acagcccgac tacgatgccg tccagctgcg
2641 gggcaaccat ggaaccatag catcatcccc agcagcaaca taccccacaa cagcagcagc
2701 agcagcagca gcatcactgc agcagcaaca gcaacagcga cgaaccctgc gtctgggcac
2761 agtcaccatc ggggagtacg gagagcagcg aaccaagcgg gagacgctga ggaaagtgaa
2821 cgttggcgac acgacggtgg ccacgctcag ctccaatggt atactgaaga acggttcgag
2881 tcggagcagc gccagcttca gtcagcacgg ggagaagacc attaagtttg gcaactgacg
2941 ccacgcagat ccgtgctatc agcaatactt ttgtgcaata cgctcgacgg agaagagtac
3001 aaaactggac gtgcagaggc ggcattccca tgtgcacatc gtacatatta ccgcatatta
3061 cttatgtctt ttttttacaa taataatagg gttttttttt gtgcgatttg ttgagctttc
3121 gaaatggaaa agatgtacga ttagttttta ttattattcg atgtactctg taaataaaat
3181 atataaattc cg