PREDICTED: Drosophila obscura probable citrate synthase,
LOCUS XM_022370945 1920 bp mRNA linear INV 14-MAY-2021
mitochondrial (LOC111076900), transcript variant X1, mRNA.
ACCESSION XM_022370945
VERSION XM_022370945.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022370945.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1920
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..1920
/gene="LOC111076900"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 9 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 17 samples with support for all annotated
introns"
/db_xref="GeneID:111076900"
CDS 16..1569
/gene="LOC111076900"
/codon_start=1
/product="probable citrate synthase, mitochondrial isoform
X1"
/protein_id="XP_022226637.2"
/db_xref="GeneID:111076900"
/translation="MYFSRCLTPDVVLHLQCRTLAKKSVRDAKNLLREILRAPLEEEV
QEKTVVQAVAKPQAARDGGPDSLQKLPNVGSYVRLISADGRSLRDVLNAKVPEEQERV
KNFRKQHGATKLGETTIDMMYGGMRGIKALVTETSVLDADEGIRFRGLSIPECQKVLP
AAPGGTEPLPEGLFWLLLTGEVPSQAQVQQLSREWAERAALPQHVVTMLNNMPTSLHP
MSQLAAAVTALNHDSKFAKAYSEGVHKSKYWEYVYEDSMDLIAKLPVVAATIYCNTYR
GGKGSRSIDSSLDWSANFVKMLGYDNAQFTELMRLYLTIHSDHEGGNVSAHTVHLVGS
ALSDPYLSFAAGMNGLAGPLHGLANQEVLVWLRKLQKEAGNNPSEEQLKEYIWKTLKS
GQVVPGYGHAVLRKTDPRYTCQREFALKHLPEDELFQLVSKIYKVVPPILTETGKVKN
PWPNVDAHSGVLLQYFGMKEMNYYTVLFGVSRALGVLASLVWDRALGLPIERPKSYST
DLLVKMVQK"
misc_feature 274..1557
/gene="LOC111076900"
/note="Saccharomyces cerevisiae (Sc) citrate synthases
Cit1-2_like. Citrate synthases (CS) catalyzes the
condensation of acetyl coenzyme A (AcCoA) with
oxaloacetate (OAA) to form citrate and coenzyme A (CoA),
the first step in the citric acid cycle (TCA or...;
Region: ScCit1-2_like; cd06105"
/db_xref="CDD:99858"
misc_feature order(388..393,400..420,673..675,685..687,694..696,
970..972,985..987,994..999,1006..1011,1018..1026,
1036..1038,1057..1062,1069..1077,1219..1221,1510..1536)
/gene="LOC111076900"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:99858"
misc_feature order(394..396,970..972,982..984,1072..1083,1087..1089,
1096..1098,1198..1221,1228..1230,1243..1245,1366..1368,
1375..1377,1381..1383,1447..1449,1459..1461,1510..1512,
1519..1521)
/gene="LOC111076900"
/note="active site"
/db_xref="CDD:99858"
misc_feature order(394..396,1072..1080,1087..1089,1096..1098,
1198..1221,1228..1230,1366..1368,1375..1377,1381..1383,
1510..1512)
/gene="LOC111076900"
/note="coenzyme A binding site [chemical binding]; other
site"
/db_xref="CDD:99858"
misc_feature order(394..396,970..972,982..984,1075..1080,1198..1203,
1207..1221,1243..1245,1375..1377,1459..1461)
/gene="LOC111076900"
/note="citrylCoA binding site [chemical binding]; other
site"
/db_xref="CDD:99858"
misc_feature order(970..972,982..984,1078..1083,1216..1221,1243..1245,
1381..1383,1447..1449,1459..1461,1519..1521)
/gene="LOC111076900"
/note="oxalacetate/citrate binding site [chemical
binding]; other site"
/db_xref="CDD:99858"
misc_feature order(1078..1080,1216..1218,1381..1383)
/gene="LOC111076900"
/note="catalytic triad [active]"
/db_xref="CDD:99858"
ORIGIN
1 agagaaaccc ttagaatgta cttttcccgg tgcttgactc cagacgttgt cctacaccta
61 caatgccgca cattggccaa gaaatcggtc cgggatgcca agaatttgct gcgcgaaatc
121 ttgcgtgccc ccctggaaga ggaggtgcaa gaaaagactg tcgtccaggc tgtggccaag
181 ccacaagcgg cacgggacgg agggcctgac tccctgcaga aacttcccaa tgttgggtca
241 tatgtgcgcc tgatctcggc cgatggacgc agcctgcgcg acgtactgaa cgccaaggtg
301 cccgaggagc aggagcgcgt gaagaacttc cgcaagcagc atggcgcgac caagctgggt
361 gagaccacca tcgatatgat gtacggcggt atgcgcggca tcaaggccct ggtaacggag
421 acctccgtgc tggacgccga tgagggtatc cgcttccgcg gcctctccat ccccgagtgc
481 cagaaggtgc tgcccgctgc ccccggtggc actgagcccc tgcccgaggg tctcttctgg
541 ctgctgttga ccggcgaggt gcccagccag gcccaggtgc agcagctctc ccgcgagtgg
601 gccgagcgcg ctgccctgcc ccagcatgtg gtcaccatgc tgaacaacat gcccaccagc
661 ctgcatccca tgtcgcagct ggccgccgcc gttacggccc tcaatcacga cagcaagttc
721 gccaaggcat actctgaggg tgtgcacaag agcaagtact gggagtatgt ctacgaggac
781 agcatggacc tgatcgccaa gctgccagtg gtggccgcca ccatctactg caacacgtat
841 cgcggcggca agggctcccg ctcgatcgac tcgagcctcg attggtccgc caactttgtg
901 aagatgctcg gctacgacaa tgcccagttc accgaactga tgcgtctcta tctgaccatc
961 cacagcgatc acgagggtgg caatgtctct gcccataccg tgcatttggt tggatccgct
1021 ctgagcgatc cctatctgtc gtttgccgcc ggcatgaacg gtctcgccgg tccactgcac
1081 ggcctggcca accaggaggt gctcgtctgg ctgcgcaagc tccagaagga ggctggcaac
1141 aatccatccg aggagcagct gaaggagtac atctggaaga cactcaagtc tggacaggtt
1201 gtgcccggct atggacatgc cgtgctccgt aagaccgatc cccgctacac ctgccagcgc
1261 gagtttgccc tgaagcattt gccggaggat gagctcttcc agctggtgtc gaagatctac
1321 aaggtggtgc caccaatcct gaccgagacc ggcaaggtga agaacccctg gcccaatgta
1381 gatgctcact ccggtgtcct gctgcagtac ttcggcatga aggagatgaa ctactacacc
1441 gttctgtttg gcgtctcgcg tgcccttggc gtgctcgctt ccctcgtctg ggatcgtgcc
1501 cttggactgc ccatcgagcg tcccaagtca tactccaccg atcttctggt caagatggtc
1561 cagaagtaaa tggtggtcga cgatggcgcg gcgcagatgg ggtgatgcag ggagattgga
1621 gggaaatttt tagacgcagg tgcggtcgca gaagatgaat tattcgtctt cgcggcagta
1681 gccaagtaat aaacgagaga gagggaagag tgagtgaggg aagagaaacg agacgtaatg
1741 aaaatgaaat gacgattgaa tgtgtagtag aaacaacaac caaatacgaa ccaacagcta
1801 aataacaaca aaactgctaa gaaaacaaac aacaaatgga agagcaaaaa caataagttg
1861 gaaataaggc agaaaactta tttttaaatt agtaaaataa ttacactcag caaaacaaaa