PREDICTED: Drosophila obscura nuclear pore complex protein Nup153
LOCUS XM_022364379 6776 bp mRNA linear INV 14-MAY-2021
(LOC111072471), mRNA.
ACCESSION XM_022364379
VERSION XM_022364379.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq; corrected model; includes ab initio.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022364379.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
ab initio :: 1% of CDS bases
frameshifts :: corrected 2 indels
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-1296 JAECWW010000165.1 1852381-1853676 c
1297-1824 JAECWW010000165.1 1851762-1852289 c
1825-2111 JAECWW010000165.1 1851380-1851666 c
2112-5067 JAECWW010000165.1 1848312-1851267 c
5068-5673 JAECWW010000165.1 1847705-1848310 c
5674-6417 JAECWW010000165.1 1846960-1847703 c
6418-6606 JAECWW010000165.1 1846688-1846876 c
6607-6674 JAECWW010000165.1 1844844-1844911 c
6675-6776 JAECWW010000165.1 1844007-1844108 c
FEATURES Location/Qualifiers
source 1..6776
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6776
/gene="LOC111072471"
/note="The sequence of the model RefSeq transcript was
modified relative to its source genomic sequence to
represent the inferred CDS: deleted 2 bases in 2 codons;
Derived by automated computational analysis using gene
prediction method: Gnomon. Supporting evidence includes
similarity to: 2 Proteins, and 99% coverage of the
annotated genomic feature by RNAseq alignments, including
15 samples with support for all annotated introns"
/db_xref="GeneID:111072471"
CDS 1099..6768
/gene="LOC111072471"
/note="The sequence of the model RefSeq protein was
modified relative to its source genomic sequence to
represent the inferred CDS: deleted 2 bases in 2 codons"
/codon_start=1
/product="LOW QUALITY PROTEIN: nuclear pore complex
protein Nup153"
/protein_id="XP_022220071.2"
/db_xref="GeneID:111072471"
/translation="MSDNEDSPHQNNQTKKQLQLQRNQATTFSTRSGGSTHPLTPLQE
ATEAEEGAEDDSAAGTPLVSRKSLMGRVKLRVSNILPSSWFSPTSKAALEAEQEQQEQ
QQQQQQQQQNGTGTTGTTSLTKRKRGRRRIELAEPDGEDSPAGGLLPDVDDGAAARGL
DYEEVALADNIAEHDLVAEDEQTRRSEYNVFLLRKRRAAIAADDDFDEDDDDVGDGDE
EEEEDDDGPAQASISAPTKRRRVELEISVNLPSMRRLPLPLVSSTPAAVASGGQLFTS
GNSQVVEGTRSHSRGSNPGGVAPHRRTHLNLYHQRQHRESGYNFFAGNETAAEATTGD
LPVSIRRSLNIPAIEHPRSRSFSFGQTQTSSNLSAMPLANHKRPPLLVGQTATARETC
RDVVQSENERIERLLNICKSNNNISSSNNNNIIKSKRGAATATGASGAADLESELNEY
PEGVEGGDSYPYHHNSNSNLSFYGNLQSAKSIFTRGSAQPPHHNSTCSLNSLNKRQRF
NASIYGSSSALSDSRLLTRSASASACGSGSTSSSPFYKGQTTFGGNSAHNRIFGQSAV
GGGSSSSLAMNSGGSSPAAHQVTSAVGSPANAGYGGMKPLAMQPSSNQPIIKQPEITN
ESVVDSMSLSSTTRRILSLLESYSTPLIDVKRLGNTLKEQQQLQRSTSNPYSRPNRSM
LHTDQQQQQQNQQQQQPQSLLAPTMQHILERRRLHRVSQCSKDLLLNYKPNASSAGGS
TSMALAALPARHTNNNNNNSHTNKMRSRLSHQSARKEPREDTELAPEPLDLPTINFPA
MANTPTFDLVIKPPPPTMPLVAANTTADLQMRPKPPQTAFPMPAVNFVCANVNSGAAA
PATAAAHAAFQPSSVSGRGFDFGEPIPILEESARIQGGTAHQTRITRDFSFTEPASLE
RQQQQQQQESLPFMNGPTTAAAAHNPSSSQQQVSSVFTLGVGVEGGFSQQFKKSATEW
ECDVCMIRNKSELVKCAACETPKPSKTTLPAAAPVPATVPFTGASGFGDRFKKSSSAW
ECDTCMVSNKNEANKCVACETPRPGAATAASKTTTTTDCFSITNSPGCGSGSGSGFGS
GFSTSSSSSGFGQAFRPKANTWECQTCLVMNQTTAVECVACQSRNPNASSESSSSSST
SNPPTNVSSSTSSSSNITSFKFGFPPEQQQQKQQQQQTGVKQDAGFQHLVAAQKAASW
ECETCMAMNDQSLSKCCCCEQLRPGADDCKSSSNATHPVPTFTFGFVPKAKEAAPVQP
VLSVQPAAVLSTSNIAAPQFSFGFGQSKDVADSKNASMGGFKFGAPATTTSSQEEAKS
IDLRAMPTATKATSTTGTETAAVVPAAAPPSQFSFRAPTTTTSTVLSSSSDASIAPAT
GTGTAAAAATVTSQVFSFGAPSSLPSSSSAVSSSTHTSGSNSSATSVISSNVKPMFSF
SAAVSASGSATPSGVSSSTSQQPTVTTASVGFFGAGTTTNPGGPATTTSTSFAATPAP
ALVPAAASAAAPTPAAGLFSFGSASSASSTTKLAPSSNSSTFFFGQTPTSTAAPSSNA
TTSIFGAAVTSVASGNNNSTSISFSSSTNAASTAAPAAAAAPTPVTFSFGEKRAASGA
PANSLTKPVSFGWPSPSASASPIPSNGSIAPATATATDSSSTTTNLPTVVSSNSVFGS
GFGSAFGSTSTASTPASTPAAATSAFGGNGAHPSTGFGFAGNSIASQSSPAPAPSSGP
APIFNNAIAPAFGGSNGGGGGGFGGGSNATAAKPAFNFGGSSALSQSAGTSGPFNFGG
GGGTGANATSTKPAFNFTGSATVSAAAATPQATTTFNFSASSAIANPLASGDSTPNAN
APFQFSAGAPAPANMFAFNPPPAGNAAQNSQMVRRKMRAPVRRLPPR"
misc_feature 4009..4089
/gene="LOC111072471"
/note="Zn-finger in Ran binding protein and others;
Region: zf-RanBP; pfam00641"
/db_xref="CDD:395516"
misc_feature 4012..4071
/gene="LOC111072471"
/note="RanBP2-type Zn finger [structural motif]; Region:
RanBP2-type Zn finger"
/db_xref="CDD:275376"
misc_feature 4186..4263
/gene="LOC111072471"
/note="Zn-finger in Ran binding protein and others;
Region: zf-RanBP; pfam00641"
/db_xref="CDD:395516"
misc_feature 4186..4245
/gene="LOC111072471"
/note="RanBP2-type Zn finger [structural motif]; Region:
RanBP2-type Zn finger"
/db_xref="CDD:275376"
misc_feature 4300..4356
/gene="LOC111072471"
/note="RanBP2-type Zn finger [structural motif]; Region:
RanBP2-type Zn finger"
/db_xref="CDD:275375"
misc_feature 4414..4503
/gene="LOC111072471"
/note="Zn-finger in Ran binding protein and others;
Region: zf-RanBP; pfam00641"
/db_xref="CDD:395516"
misc_feature 4426..4485
/gene="LOC111072471"
/note="RanBP2-type Zn finger [structural motif]; Region:
RanBP2-type Zn finger"
/db_xref="CDD:275375"
misc_feature 4555..4608
/gene="LOC111072471"
/note="RanBP2-type Zn finger [structural motif]; Region:
RanBP2-type Zn finger"
/db_xref="CDD:275375"
misc_feature 4708..4767
/gene="LOC111072471"
/note="RanBP2-type Zn finger [structural motif]; Region:
RanBP2-type Zn finger"
/db_xref="CDD:275375"
ORIGIN
1 cgtcgcatta gctacacgcg tttttctcaa atcgtgcttt tttttgtgaa aaaattaaat
61 taaatttaat ttaattaaag atgttttgcg acacaaatcc ggttggcagt gcgtgcagct
121 aaaatgattt gagaatagca gggcatacgt tgcgtctctg gctgtacaac tcaagcattt
181 tgaaaccaaa tgagtgcgtt tgcttgcagg cgaatgccat agctgggtat ctcgcgcgcg
241 cgtgtgtgtg tgtggtgtat aaaagaattg caaaagaaaa aaacaagacg aaaaaaaaaa
301 acgaagcgat tgtaggacga aatcaaacag gcaggcggta gggcaaagca aaaaggaaaa
361 tagcaaaaac gctcttagcg cggcgtgcgg ttagtgtgtt atccggcgca gcgccaagcg
421 tggatccaag cagaaaccca agcaacagca gtcggcaggc agcggcctcc gccaagctaa
481 aaaaatatat atatatatgt aaaaaaaaga accccccgcc cgttttgcca tatttggttc
541 actgacgaaa ttgagtccgc aataaacata atcctcattt gatcgagacg tgaaaaacga
601 acaatttacc acatacatat gcacatacat catatatgta ccgaattttc tttacaattt
661 ataatcccga tgtgaatctc atttaaccgc gtctcttgtg cttgcagagg aatatacata
721 tatttgccgt gtgatggatg gataaataaa taaatacatt cagagctgct gcactttctg
781 gcgccaaagt gcaaagacac acaaaaaaaa gatcgagaga aaaaaattta aaagaaaaaa
841 aatcgccgcg tgtgtggaat ctcgtcgaca gaaaaccaat acagtgacac ggcgtgcgta
901 acacacacac acattgaaca cactcaccca ggattgcaac agtgtgttcc gtttatattt
961 ctttttttat tttttattgt tgttttgcgc gttagcgcgt gtgtgtggtg tgtgtgtgtg
1021 ggcgtgtgtt agtttctttt tggttagttt tcattttgtg tgtcgtgccg tgtttcatcg
1081 ccggcttaaa atccaataat gtcggataat gaggatagtc cacaccaaaa taaccaaaca
1141 aaaaaacaac tgcagctgca acgaaaccaa gccacaacat tcagcacgag atcgggaggg
1201 agcacacatc cgctcacgcc acttcaggaa gcgaccgagg ccgaggaggg ggccgaagat
1261 gattctgctg ccggcacacc cctcgtctcc cgcaaatctc tcatgggaag ggtgaagctg
1321 cgcgtttcaa atatcctgcc atcgtcatgg ttctcgccaa cctccaaggc ggccttggag
1381 gccgaacagg agcaacagga gcagcaacaa caacaacaac aacaacaaca gaatggaaca
1441 ggaacaacgg gaacaacgtc tctaacgaaa aggaaacgtg gacgccgtcg catagagctg
1501 gccgaaccag atggcgagga ttcacccgct ggaggcctgc tacccgatgt ggatgatggt
1561 gccgctgcac gaggtctgga ctacgaggag gtggccctgg ccgacaacat agccgagcat
1621 gacttggttg ccgaggatga gcagacgcga cgcagcgaat acaatgtgtt cctcttgcgc
1681 aaacggcgcg ctgcgattgc cgccgatgat gattttgatg aagatgacga cgatgtggga
1741 gatggtgacg aagaggagga ggaggatgac gatggtccag cacaagcgtc catctctgcc
1801 ccgactaagc gtcgacgtgt ggaactggag ataagcgtca atttgccaag catgcggcga
1861 ctgccattgc cactggtttc ctctacgccc gccgctgtcg cttccggcgg ccaactattc
1921 acctcaggca actctcaggt agtggaaggc acccgcagcc atagccgtgg ctccaatccg
1981 ggtggcgttg ccccgcatcg tcgcacccac ttgaacctct atcaccagcg gcagcatcgt
2041 gagtcgggct acaatttctt tgcgggcaac gagacggccg ccgaggccac cacaggagat
2101 ctgccagtca gtatacgtcg atcgctgaac ataccagcca tagagcatcc acgcagtcgc
2161 agcttcagct ttggacaaac gcaaactagc agcaatttgt ccgccatgcc attggctaac
2221 cacaagagac cccctctgct ggtggggcag acggccacgg cccgtgagac atgtcgcgat
2281 gtggtacagt cggagaatga gcggattgag cggctgctga atatctgcaa atccaataat
2341 aatatcagca gcagcaacaa caacaacatt atcaaatcga agagaggcgc cgccacagcg
2401 acaggcgcat caggagcagc agatttggag agcgaactga atgaatatcc ggagggagta
2461 gagggtggcg actcctatcc ctatcatcac aacagcaaca gcaatctatc gttctatggg
2521 aatttgcaga gcgcaaagtc aatatttaca cgcggctcgg cccagccgcc gcaccacaac
2581 tcgacttgtt cgctaaactc gcttaacaag cggcagcgct tcaatgcctc catttatggc
2641 agctcctcgg cattgagcga cagccggctg ttgacacgca gtgcttccgc ctcggcctgt
2701 gggtccggtt caacatctag ctcgcccttc tacaagggcc agaccacatt cggcggcaat
2761 tcggcacaca atcgcatctt tgggcagagt gctgttggtg gtggttcctc ctcctcgttg
2821 gccatgaact ctggaggcag ttcgccggcc gcccatcagg tgacatcggc agttggcagt
2881 cccgccaatg ccggttacgg cggcatgaag ccattggcca tgcaacccag cagcaatcaa
2941 cccatcatca agcaaccaga gataacaaac gaatcggtcg tggacagcat gtccctctca
3001 agcaccacac gtcgcatcct gagcctgctg gagagctact ccacgccact gattgatgtt
3061 aagcggcttg gcaacaccct aaaggagcag cagcagctgc agcgtagcac cagcaatccc
3121 tatagccggc ccaatcgttc tatgctgcac acagaccagc aacagcagca gcaaaatcag
3181 cagcaacagc agccacaaag tctgctggca cccaccatgc agcacatact cgaacgacgt
3241 cgcctgcatc gtgtcagcca gtgttcgaag gatttgctct tgaattacaa gccaaatgca
3301 tcatcggccg gtgggtccac ctcaatggcc ctggcggctc tgccagcccg tcacaccaat
3361 aataataaca ataatagtca cacgaacaag atgcgttccc gactgagtca tcagtcggcg
3421 cgcaaggagc cgcgcgaaga taccgaactg gcacccgaac cactcgactt gccgacgatc
3481 aacttcccgg ccatggcaaa tacaccgaca tttgatttgg tcatcaagcc gccgccgcca
3541 acgatgccat tggtggcagc gaacacaacg gcggatcttc agatgcgtcc caagccgccc
3601 caaacagcat tccctatgcc tgcggttaat tttgtgtgtg ccaatgtgaa ttctggagca
3661 gcagcaccag ctacagctgc agctcatgct gcgtttcagc ctagcagcgt atcaggacgt
3721 ggcttcgatt ttggagaacc catacccata ctggaggaaa gtgcaaggat tcaaggtgga
3781 actgcacatc aaacgaggat cacgcgcgat ttctccttta cagagccagc ttcattggag
3841 aggcagcagc agcaacagca gcaagagtct ctgccattta tgaacggccc caccaccgca
3901 gcagctgcac ataatccaag cagcagccag cagcaagtat catccgtatt cacactggga
3961 gtgggagtgg aaggaggctt tagccagcag tttaaaaaat cagccactga atgggagtgc
4021 gatgtgtgca tgatcagaaa taagtcggag ctggttaagt gtgcagcatg cgagacgcca
4081 aagccttcca agactactct accagctgca gctccagttc cagctacagt cccattcacg
4141 ggtgccagcg ggttcggaga tcgtttcaag aagtcttcga gtgcctggga atgcgacacg
4201 tgcatggtat ccaacaagaa tgaggccaac aagtgcgtgg cctgtgagac gccacgcccg
4261 ggagctgcta cagcggccag caagaccacc accaccaccg actgtttctc aattacaaac
4321 agcccgggat gcggctccgg ctctggctct ggcttcggat cgggtttctc tacatccagt
4381 tcgagttccg gatttgggca ggccttcagg cccaaggcca acacatggga gtgccagaca
4441 tgcctggtga tgaatcagac gacagccgtc gagtgcgtcg cctgccagtc gcgcaatccc
4501 aatgccagca gcgagtccag ctcgagctcc tccacaagta atcctccaac caatgtctct
4561 tcaagcacca gcagcagcag taacatcacc agcttcaagt ttggcttccc cccagagcag
4621 cagcaacaga aacagcagca gcagcagacg ggagttaaac aggatgccgg tttccagcac
4681 ctggtggctg cccagaaggc agccagctgg gagtgcgaga cgtgcatggc tatgaacgac
4741 cagtcactct ccaagtgctg ctgctgcgag caactgaggc cgggagccga cgactgcaaa
4801 tcctcatcca acgccactca ccctgtgccc acgtttacgt tcggttttgt gccaaaagca
4861 aaggaagcag caccagtcca gccagtactg tcagtccaac cggctgccgt cctgtccaca
4921 tcgaacatcg ctgctcctca gttctcgttt ggctttggcc agagcaagga tgtggcagac
4981 agcaagaacg cttcaatggg aggattcaag ttcggagccc cagccaccac caccagcagt
5041 caggaggagg caaagtcgat cgatctaagg gctatgccga cggccacaaa ggccacatcc
5101 accacgggaa ccgagacggc agcagttgtt ccagcagcgg ctccccctag ccaattttca
5161 ttcagagccc ccaccaccac cacatcgaca gtgctgtcat ccagcagcga cgcttccatc
5221 gctcccgcta ccggtaccgg taccgccgct gccgctgcca ctgtcacgag tcaagtgttc
5281 agctttggtg ccccgtcatc attaccttca tcatcatcgg ccgtgtccag ttcgacgcat
5341 acttcgggca gcaactccag cgccaccagc gtgatcagct ccaatgtgaa gccaatgttt
5401 agcttcagcg ctgccgtctc tgcctctggc tccgccacgc ccagcggcgt tagcagcagc
5461 acaagccaac agccgacggt gacgacggca tccgtgggct tctttggggc tgggaccacc
5521 accaatccag gaggaccagc cacaacaact agcacatcgt ttgcagcaac accggctcca
5581 gcattggttc ctgctgctgc ttctgctgca gcgccaacgc cagcggcagg cttgttcagc
5641 tttggcagtg catcttcagc tagctccacg acaaagctgg cccccagcag caacagcagc
5701 accttcttct ttggccagac tccgacatcg acggcagcgc cgagttcaaa tgcgacgacc
5761 tccatctttg gcgcagcagt aacatcagta gcctcgggta ataataacag cacgtccatt
5821 agcttcagca gcagcaccaa cgcagcctca actgctgcgc cagccgcagc tgcagctcca
5881 actccggtga cgtttagctt tggggagaag agagcggcat cgggtgctcc cgcaaacagc
5941 ctgacaaagc ccgtaagctt tggctggccc agtcccagtg ccagcgctag ccccataccc
6001 agtaatggca gcatagctcc ggccaccgcc acagccactg acagcagcag caccaccacc
6061 aacctcccga cggtggtgtc cagcaactct gttttcggca gtggatttgg gtcagctttc
6121 ggcagtacat cgaccgccag cacaccagca tcaacgccgg cagctgcgac ttcagctttt
6181 ggcggtaatg gagcacaccc cagcacgggt ttcggctttg cgggtaactc gatagcatcc
6241 caatcttcgc ctgcgccagc gccctcatca ggcccggctc ctatattcaa caatgccatc
6301 gcgcctgcct ttggtggcag caatgggggt ggaggtggag gattcggcgg cggaagcaat
6361 gcaacagctg caaagccagc atttaacttt ggaggctcct cggctctttc ccagtcggcg
6421 ggcacatctg gacccttcaa ctttggtggt ggcggcggca ccggggccaa tgcgacgtcc
6481 acaaagccgg cctttaattt tacgggctcg gctactgtgt ccgccgcagc agcaacacca
6541 caggcgacga ctacctttaa cttttccgcc agttcggcga ttgccaatcc cctagcatcg
6601 ggcgattcaa cgccaaatgc caacgcaccg ttccaattta gtgccggtgc tccggcgcca
6661 gccaatatgt tcgccttcaa tccaccgcca gctggaaacg ccgcccagaa ttcacagatg
6721 gtgcgccgca agatgcgcgc ccccgtgcgc cgtttgccgc cacggtagaa gtggca