Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_022364379 6776 bp mRNA linear INV 14-MAY-2021 (LOC111072471), mRNA. ACCESSION XM_022364379 VERSION XM_022364379.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq; corrected model; includes ab initio. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022364379.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1296 JAECWW010000165.1 1852381-1853676 c 1297-1824 JAECWW010000165.1 1851762-1852289 c 1825-2111 JAECWW010000165.1 1851380-1851666 c 2112-5067 JAECWW010000165.1 1848312-1851267 c 5068-5673 JAECWW010000165.1 1847705-1848310 c 5674-6417 JAECWW010000165.1 1846960-1847703 c 6418-6606 JAECWW010000165.1 1846688-1846876 c 6607-6674 JAECWW010000165.1 1844844-1844911 c 6675-6776 JAECWW010000165.1 1844007-1844108 c FEATURES Location/Qualifiers source 1..6776 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6776 /gene="LOC111072471" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns" /db_xref="GeneID:111072471" CDS 1099..6768 /gene="LOC111072471" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons" /codon_start=1 /product="LOW QUALITY PROTEIN: nuclear pore complex protein Nup153" /protein_id="XP_022220071.2" /db_xref="GeneID:111072471" /translation="MSDNEDSPHQNNQTKKQLQLQRNQATTFSTRSGGSTHPLTPLQE ATEAEEGAEDDSAAGTPLVSRKSLMGRVKLRVSNILPSSWFSPTSKAALEAEQEQQEQ QQQQQQQQQNGTGTTGTTSLTKRKRGRRRIELAEPDGEDSPAGGLLPDVDDGAAARGL DYEEVALADNIAEHDLVAEDEQTRRSEYNVFLLRKRRAAIAADDDFDEDDDDVGDGDE EEEEDDDGPAQASISAPTKRRRVELEISVNLPSMRRLPLPLVSSTPAAVASGGQLFTS GNSQVVEGTRSHSRGSNPGGVAPHRRTHLNLYHQRQHRESGYNFFAGNETAAEATTGD LPVSIRRSLNIPAIEHPRSRSFSFGQTQTSSNLSAMPLANHKRPPLLVGQTATARETC RDVVQSENERIERLLNICKSNNNISSSNNNNIIKSKRGAATATGASGAADLESELNEY PEGVEGGDSYPYHHNSNSNLSFYGNLQSAKSIFTRGSAQPPHHNSTCSLNSLNKRQRF NASIYGSSSALSDSRLLTRSASASACGSGSTSSSPFYKGQTTFGGNSAHNRIFGQSAV GGGSSSSLAMNSGGSSPAAHQVTSAVGSPANAGYGGMKPLAMQPSSNQPIIKQPEITN ESVVDSMSLSSTTRRILSLLESYSTPLIDVKRLGNTLKEQQQLQRSTSNPYSRPNRSM LHTDQQQQQQNQQQQQPQSLLAPTMQHILERRRLHRVSQCSKDLLLNYKPNASSAGGS TSMALAALPARHTNNNNNNSHTNKMRSRLSHQSARKEPREDTELAPEPLDLPTINFPA MANTPTFDLVIKPPPPTMPLVAANTTADLQMRPKPPQTAFPMPAVNFVCANVNSGAAA PATAAAHAAFQPSSVSGRGFDFGEPIPILEESARIQGGTAHQTRITRDFSFTEPASLE RQQQQQQQESLPFMNGPTTAAAAHNPSSSQQQVSSVFTLGVGVEGGFSQQFKKSATEW ECDVCMIRNKSELVKCAACETPKPSKTTLPAAAPVPATVPFTGASGFGDRFKKSSSAW ECDTCMVSNKNEANKCVACETPRPGAATAASKTTTTTDCFSITNSPGCGSGSGSGFGS GFSTSSSSSGFGQAFRPKANTWECQTCLVMNQTTAVECVACQSRNPNASSESSSSSST SNPPTNVSSSTSSSSNITSFKFGFPPEQQQQKQQQQQTGVKQDAGFQHLVAAQKAASW ECETCMAMNDQSLSKCCCCEQLRPGADDCKSSSNATHPVPTFTFGFVPKAKEAAPVQP VLSVQPAAVLSTSNIAAPQFSFGFGQSKDVADSKNASMGGFKFGAPATTTSSQEEAKS IDLRAMPTATKATSTTGTETAAVVPAAAPPSQFSFRAPTTTTSTVLSSSSDASIAPAT GTGTAAAAATVTSQVFSFGAPSSLPSSSSAVSSSTHTSGSNSSATSVISSNVKPMFSF SAAVSASGSATPSGVSSSTSQQPTVTTASVGFFGAGTTTNPGGPATTTSTSFAATPAP ALVPAAASAAAPTPAAGLFSFGSASSASSTTKLAPSSNSSTFFFGQTPTSTAAPSSNA TTSIFGAAVTSVASGNNNSTSISFSSSTNAASTAAPAAAAAPTPVTFSFGEKRAASGA PANSLTKPVSFGWPSPSASASPIPSNGSIAPATATATDSSSTTTNLPTVVSSNSVFGS GFGSAFGSTSTASTPASTPAAATSAFGGNGAHPSTGFGFAGNSIASQSSPAPAPSSGP APIFNNAIAPAFGGSNGGGGGGFGGGSNATAAKPAFNFGGSSALSQSAGTSGPFNFGG GGGTGANATSTKPAFNFTGSATVSAAAATPQATTTFNFSASSAIANPLASGDSTPNAN APFQFSAGAPAPANMFAFNPPPAGNAAQNSQMVRRKMRAPVRRLPPR" misc_feature 4009..4089 /gene="LOC111072471" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 4012..4071 /gene="LOC111072471" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 4186..4263 /gene="LOC111072471" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 4186..4245 /gene="LOC111072471" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 4300..4356 /gene="LOC111072471" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275375" misc_feature 4414..4503 /gene="LOC111072471" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 4426..4485 /gene="LOC111072471" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275375" misc_feature 4555..4608 /gene="LOC111072471" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275375" misc_feature 4708..4767 /gene="LOC111072471" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275375" ORIGIN 1 cgtcgcatta gctacacgcg tttttctcaa atcgtgcttt tttttgtgaa aaaattaaat 61 taaatttaat ttaattaaag atgttttgcg acacaaatcc ggttggcagt gcgtgcagct 121 aaaatgattt gagaatagca gggcatacgt tgcgtctctg gctgtacaac tcaagcattt 181 tgaaaccaaa tgagtgcgtt tgcttgcagg cgaatgccat agctgggtat ctcgcgcgcg 241 cgtgtgtgtg tgtggtgtat aaaagaattg caaaagaaaa aaacaagacg aaaaaaaaaa 301 acgaagcgat tgtaggacga aatcaaacag gcaggcggta gggcaaagca aaaaggaaaa 361 tagcaaaaac gctcttagcg cggcgtgcgg ttagtgtgtt atccggcgca gcgccaagcg 421 tggatccaag cagaaaccca agcaacagca gtcggcaggc agcggcctcc gccaagctaa 481 aaaaatatat atatatatgt aaaaaaaaga accccccgcc cgttttgcca tatttggttc 541 actgacgaaa ttgagtccgc aataaacata atcctcattt gatcgagacg tgaaaaacga 601 acaatttacc acatacatat gcacatacat catatatgta ccgaattttc tttacaattt 661 ataatcccga tgtgaatctc atttaaccgc gtctcttgtg cttgcagagg aatatacata 721 tatttgccgt gtgatggatg gataaataaa taaatacatt cagagctgct gcactttctg 781 gcgccaaagt gcaaagacac acaaaaaaaa gatcgagaga aaaaaattta aaagaaaaaa 841 aatcgccgcg tgtgtggaat ctcgtcgaca gaaaaccaat acagtgacac ggcgtgcgta 901 acacacacac acattgaaca cactcaccca ggattgcaac agtgtgttcc gtttatattt 961 ctttttttat tttttattgt tgttttgcgc gttagcgcgt gtgtgtggtg tgtgtgtgtg 1021 ggcgtgtgtt agtttctttt tggttagttt tcattttgtg tgtcgtgccg tgtttcatcg 1081 ccggcttaaa atccaataat gtcggataat gaggatagtc cacaccaaaa taaccaaaca 1141 aaaaaacaac tgcagctgca acgaaaccaa gccacaacat tcagcacgag atcgggaggg 1201 agcacacatc cgctcacgcc acttcaggaa gcgaccgagg ccgaggaggg ggccgaagat 1261 gattctgctg ccggcacacc cctcgtctcc cgcaaatctc tcatgggaag ggtgaagctg 1321 cgcgtttcaa atatcctgcc atcgtcatgg ttctcgccaa cctccaaggc ggccttggag 1381 gccgaacagg agcaacagga gcagcaacaa caacaacaac aacaacaaca gaatggaaca 1441 ggaacaacgg gaacaacgtc tctaacgaaa aggaaacgtg gacgccgtcg catagagctg 1501 gccgaaccag atggcgagga ttcacccgct ggaggcctgc tacccgatgt ggatgatggt 1561 gccgctgcac gaggtctgga ctacgaggag gtggccctgg ccgacaacat agccgagcat 1621 gacttggttg ccgaggatga gcagacgcga cgcagcgaat acaatgtgtt cctcttgcgc 1681 aaacggcgcg ctgcgattgc cgccgatgat gattttgatg aagatgacga cgatgtggga 1741 gatggtgacg aagaggagga ggaggatgac gatggtccag cacaagcgtc catctctgcc 1801 ccgactaagc gtcgacgtgt ggaactggag ataagcgtca atttgccaag catgcggcga 1861 ctgccattgc cactggtttc ctctacgccc gccgctgtcg cttccggcgg ccaactattc 1921 acctcaggca actctcaggt agtggaaggc acccgcagcc atagccgtgg ctccaatccg 1981 ggtggcgttg ccccgcatcg tcgcacccac ttgaacctct atcaccagcg gcagcatcgt 2041 gagtcgggct acaatttctt tgcgggcaac gagacggccg ccgaggccac cacaggagat 2101 ctgccagtca gtatacgtcg atcgctgaac ataccagcca tagagcatcc acgcagtcgc 2161 agcttcagct ttggacaaac gcaaactagc agcaatttgt ccgccatgcc attggctaac 2221 cacaagagac cccctctgct ggtggggcag acggccacgg cccgtgagac atgtcgcgat 2281 gtggtacagt cggagaatga gcggattgag cggctgctga atatctgcaa atccaataat 2341 aatatcagca gcagcaacaa caacaacatt atcaaatcga agagaggcgc cgccacagcg 2401 acaggcgcat caggagcagc agatttggag agcgaactga atgaatatcc ggagggagta 2461 gagggtggcg actcctatcc ctatcatcac aacagcaaca gcaatctatc gttctatggg 2521 aatttgcaga gcgcaaagtc aatatttaca cgcggctcgg cccagccgcc gcaccacaac 2581 tcgacttgtt cgctaaactc gcttaacaag cggcagcgct tcaatgcctc catttatggc 2641 agctcctcgg cattgagcga cagccggctg ttgacacgca gtgcttccgc ctcggcctgt 2701 gggtccggtt caacatctag ctcgcccttc tacaagggcc agaccacatt cggcggcaat 2761 tcggcacaca atcgcatctt tgggcagagt gctgttggtg gtggttcctc ctcctcgttg 2821 gccatgaact ctggaggcag ttcgccggcc gcccatcagg tgacatcggc agttggcagt 2881 cccgccaatg ccggttacgg cggcatgaag ccattggcca tgcaacccag cagcaatcaa 2941 cccatcatca agcaaccaga gataacaaac gaatcggtcg tggacagcat gtccctctca 3001 agcaccacac gtcgcatcct gagcctgctg gagagctact ccacgccact gattgatgtt 3061 aagcggcttg gcaacaccct aaaggagcag cagcagctgc agcgtagcac cagcaatccc 3121 tatagccggc ccaatcgttc tatgctgcac acagaccagc aacagcagca gcaaaatcag 3181 cagcaacagc agccacaaag tctgctggca cccaccatgc agcacatact cgaacgacgt 3241 cgcctgcatc gtgtcagcca gtgttcgaag gatttgctct tgaattacaa gccaaatgca 3301 tcatcggccg gtgggtccac ctcaatggcc ctggcggctc tgccagcccg tcacaccaat 3361 aataataaca ataatagtca cacgaacaag atgcgttccc gactgagtca tcagtcggcg 3421 cgcaaggagc cgcgcgaaga taccgaactg gcacccgaac cactcgactt gccgacgatc 3481 aacttcccgg ccatggcaaa tacaccgaca tttgatttgg tcatcaagcc gccgccgcca 3541 acgatgccat tggtggcagc gaacacaacg gcggatcttc agatgcgtcc caagccgccc 3601 caaacagcat tccctatgcc tgcggttaat tttgtgtgtg ccaatgtgaa ttctggagca 3661 gcagcaccag ctacagctgc agctcatgct gcgtttcagc ctagcagcgt atcaggacgt 3721 ggcttcgatt ttggagaacc catacccata ctggaggaaa gtgcaaggat tcaaggtgga 3781 actgcacatc aaacgaggat cacgcgcgat ttctccttta cagagccagc ttcattggag 3841 aggcagcagc agcaacagca gcaagagtct ctgccattta tgaacggccc caccaccgca 3901 gcagctgcac ataatccaag cagcagccag cagcaagtat catccgtatt cacactggga 3961 gtgggagtgg aaggaggctt tagccagcag tttaaaaaat cagccactga atgggagtgc 4021 gatgtgtgca tgatcagaaa taagtcggag ctggttaagt gtgcagcatg cgagacgcca 4081 aagccttcca agactactct accagctgca gctccagttc cagctacagt cccattcacg 4141 ggtgccagcg ggttcggaga tcgtttcaag aagtcttcga gtgcctggga atgcgacacg 4201 tgcatggtat ccaacaagaa tgaggccaac aagtgcgtgg cctgtgagac gccacgcccg 4261 ggagctgcta cagcggccag caagaccacc accaccaccg actgtttctc aattacaaac 4321 agcccgggat gcggctccgg ctctggctct ggcttcggat cgggtttctc tacatccagt 4381 tcgagttccg gatttgggca ggccttcagg cccaaggcca acacatggga gtgccagaca 4441 tgcctggtga tgaatcagac gacagccgtc gagtgcgtcg cctgccagtc gcgcaatccc 4501 aatgccagca gcgagtccag ctcgagctcc tccacaagta atcctccaac caatgtctct 4561 tcaagcacca gcagcagcag taacatcacc agcttcaagt ttggcttccc cccagagcag 4621 cagcaacaga aacagcagca gcagcagacg ggagttaaac aggatgccgg tttccagcac 4681 ctggtggctg cccagaaggc agccagctgg gagtgcgaga cgtgcatggc tatgaacgac 4741 cagtcactct ccaagtgctg ctgctgcgag caactgaggc cgggagccga cgactgcaaa 4801 tcctcatcca acgccactca ccctgtgccc acgtttacgt tcggttttgt gccaaaagca 4861 aaggaagcag caccagtcca gccagtactg tcagtccaac cggctgccgt cctgtccaca 4921 tcgaacatcg ctgctcctca gttctcgttt ggctttggcc agagcaagga tgtggcagac 4981 agcaagaacg cttcaatggg aggattcaag ttcggagccc cagccaccac caccagcagt 5041 caggaggagg caaagtcgat cgatctaagg gctatgccga cggccacaaa ggccacatcc 5101 accacgggaa ccgagacggc agcagttgtt ccagcagcgg ctccccctag ccaattttca 5161 ttcagagccc ccaccaccac cacatcgaca gtgctgtcat ccagcagcga cgcttccatc 5221 gctcccgcta ccggtaccgg taccgccgct gccgctgcca ctgtcacgag tcaagtgttc 5281 agctttggtg ccccgtcatc attaccttca tcatcatcgg ccgtgtccag ttcgacgcat 5341 acttcgggca gcaactccag cgccaccagc gtgatcagct ccaatgtgaa gccaatgttt 5401 agcttcagcg ctgccgtctc tgcctctggc tccgccacgc ccagcggcgt tagcagcagc 5461 acaagccaac agccgacggt gacgacggca tccgtgggct tctttggggc tgggaccacc 5521 accaatccag gaggaccagc cacaacaact agcacatcgt ttgcagcaac accggctcca 5581 gcattggttc ctgctgctgc ttctgctgca gcgccaacgc cagcggcagg cttgttcagc 5641 tttggcagtg catcttcagc tagctccacg acaaagctgg cccccagcag caacagcagc 5701 accttcttct ttggccagac tccgacatcg acggcagcgc cgagttcaaa tgcgacgacc 5761 tccatctttg gcgcagcagt aacatcagta gcctcgggta ataataacag cacgtccatt 5821 agcttcagca gcagcaccaa cgcagcctca actgctgcgc cagccgcagc tgcagctcca 5881 actccggtga cgtttagctt tggggagaag agagcggcat cgggtgctcc cgcaaacagc 5941 ctgacaaagc ccgtaagctt tggctggccc agtcccagtg ccagcgctag ccccataccc 6001 agtaatggca gcatagctcc ggccaccgcc acagccactg acagcagcag caccaccacc 6061 aacctcccga cggtggtgtc cagcaactct gttttcggca gtggatttgg gtcagctttc 6121 ggcagtacat cgaccgccag cacaccagca tcaacgccgg cagctgcgac ttcagctttt 6181 ggcggtaatg gagcacaccc cagcacgggt ttcggctttg cgggtaactc gatagcatcc 6241 caatcttcgc ctgcgccagc gccctcatca ggcccggctc ctatattcaa caatgccatc 6301 gcgcctgcct ttggtggcag caatgggggt ggaggtggag gattcggcgg cggaagcaat 6361 gcaacagctg caaagccagc atttaacttt ggaggctcct cggctctttc ccagtcggcg 6421 ggcacatctg gacccttcaa ctttggtggt ggcggcggca ccggggccaa tgcgacgtcc 6481 acaaagccgg cctttaattt tacgggctcg gctactgtgt ccgccgcagc agcaacacca 6541 caggcgacga ctacctttaa cttttccgcc agttcggcga ttgccaatcc cctagcatcg 6601 ggcgattcaa cgccaaatgc caacgcaccg ttccaattta gtgccggtgc tccggcgcca 6661 gccaatatgt tcgccttcaa tccaccgcca gctggaaacg ccgcccagaa ttcacagatg 6721 gtgcgccgca agatgcgcgc ccccgtgcgc cgtttgccgc cacggtagaa gtggca