Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_022364230 5232 bp mRNA linear INV 14-MAY-2021 (LOC111072391), mRNA. ACCESSION XM_022364230 VERSION XM_022364230.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq; corrected model. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022364230.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-2833 JAECWW010000165.1 1787540-1790372 2834-3122 JAECWW010000165.1 1790453-1790741 3123-3854 JAECWW010000165.1 1790803-1791534 3855-5232 JAECWW010000165.1 1791536-1792913 FEATURES Location/Qualifiers source 1..5232 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..5232 /gene="LOC111072391" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns" /db_xref="GeneID:111072391" CDS 138..3881 /gene="LOC111072391" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: regulator of nonsense transcripts 2" /protein_id="XP_022219922.2" /db_xref="GeneID:111072391" /translation="MPTNKSGPTVAERPAEIPETATTNSSHAAAAASATATTTSEVEA EAVPEASPNDDGDGDGDDAAKEAEEREELRLFIQELGEKIESKRLMRQQNANIELPGE EFFARLDSSLKKNTAFVKKLKMFTTTQLEPLLRELSALNLSKYISEICAALAEAKLKM NDVPSVVMLSSRLHATYVDFDTHFLEAWQKVLNMKGEKIGNPSKLRVDLRLFAELISS GVIQMKPGLALLGMVLVQLIGQDKDGHNNFSIILSFCRHCGEEYAGLVPQKMQQLALK YDVEVPKSDFLAADKQANLRTMLKGYFKALCKHVLAEQTELMNMTKNIRRTMECKGEI SSEKREKCEMMQASFDKLLASAQTLSELLAEPLPELAKESECCSPGTVIDNMLDSAAL GVLDPWGDEETRAFYTDLPDLRQFLPDFSAPKVDLETMEEPSELTEEAIDANLDAEMD IDDPPSTNSDPPSENTADDQPPPSSTPPLLLAPTGTSPNDLKPQKMCSALMELGRQQL QSQPPTAQTQQQIRQQFDTFLVNLFNCVNKELIDSAAIEFLLNFNTKHQRKKLTRTIF SVQRTRLDILPYLSRFMAVVHMCNTDVAADLSELLRKEFKWHIRKKNQLNIESKLKIV RFIGEQVKFGLFKKFDALGCLKMLLRDFQHHQIEMACAFVEVTGVYLYNCRDSRLLMN VFLDQMLRLKLATAMDSRHAAQIESVYYLVKPPESSKRESAPRPVIHEYIRHLIFEEL CKQNVERCIKMLRRIDWLDPDTSGYAIKCLSKAFLLRFPLIRCLADLVSGLSSYQPRA VTIVIDNVFEDIRAGLEIHSPRMAQRRIAMAKYLGEMYNYKLVESTHILNTLYSIISL GVSTDQSVVSPLDPPESLFRLKLACMLLDTCGPYFTSQATRKKLDYFLMFFQHYYWFK KSHPVFCRDNESSADLFPILVDHTYRDCLGAVRPKLKLYTSLEQAKESIDQLQERLFP HLKSHASNPNLASLNEISELDEGPTDEDSGSSNDQRERQVAGLEPEQSNECTENETDV PMGPPPPPEWSKEDLDFEQQYERMTTDSYQERLKEPVKATAKDIPVPMMARLQKKSYE QITAGSQISKVSSCPDLPPRSPAPDLPESSSGKTAASNAGGTGGGGGGGGATPAAAAA VPFVLMVRGNRGGKQQFKSFVCASDSHLAINLKVQEQKIREEKEKVKRLTLNITERIE EEDYQESLLPPQHRNFTQSYYQKPNRQKFKHQKGAPDADLIFH" misc_feature 471..1058 /gene="LOC111072391" /note="Middle domain of eukaryotic initiation factor 4G (eIF4G); Region: MIF4G; smart00543" /db_xref="CDD:214713" misc_feature 1731..2282 /gene="LOC111072391" /note="Middle domain of eukaryotic initiation factor 4G (eIF4G); Region: MIF4G; smart00543" /db_xref="CDD:214713" misc_feature 2325..2903 /gene="LOC111072391" /note="Middle domain of eukaryotic initiation factor 4G (eIF4G); Region: MIF4G; smart00543" /db_xref="CDD:214713" misc_feature 3261..3731 /gene="LOC111072391" /note="Up-frameshift suppressor 2; Region: Upf2; pfam04050" /db_xref="CDD:461146" ORIGIN 1 tccgcggtca cactacatcc aacaaatgaa acaaatttgc ctgaaacttc ccagatattt 61 ctgatatttc tgttttgtaa ttacaaaaca acatcgaggc tagcgtgaga caaatcatat 121 tacttacatt tgccgccatg cccactaaca agtcgggccc aactgtggca gagagaccgg 181 ccgagatacc ggaaaccgcg acaacaaact catcccatgc tgccgcagcc gccagcgcca 241 ccgccacaac aacatccgag gtagaagcag aagcagtccc agaggcgtcg ccgaacgatg 301 acggtgatgg cgatggcgat gatgctgcca aagaggcaga ggagcgcgaa gaattgcggc 361 tgttcatcca agagctgggt gagaaaatcg agagcaagcg gctgatgcgt cagcaaaatg 421 ccaacatcga gcttcccggc gaggagttct ttgcccgcct cgactccagt ctcaagaaga 481 acacggcgtt tgtgaagaag ctgaaaatgt tcaccaccac gcagctggag ccgctgctcc 541 gcgagctgtc cgccttgaat ctaagcaagt atatttcgga gatatgtgcc gccctggcgg 601 aagccaagct caagatgaac gatgtgcctt cggtggtgat gctatcctcg cgcctgcacg 661 ccacctatgt ggacttcgac acgcacttcc tggaagcctg gcagaaggtg ctgaacatga 721 agggcgagaa gatcggcaac ccgagcaagc tgcgcgtcga tctgcgtctc ttcgccgagc 781 ttatcagctc gggtgttatc cagatgaagc ccggcctggc cctgctgggc atggtgctgg 841 tgcagctaat cggccaggac aaggacgggc ataacaactt ctcgattata ctctcgtttt 901 gccgccactg cggcgaggag tacgctggcc tggtaccgca gaaaatgcaa caactggctc 961 tcaagtacga cgtggaggtg cccaaatccg atttcctggc agcggacaag caggcaaact 1021 tgcgcaccat gctcaagggc tacttcaagg ccctgtgcaa gcatgtcctg gccgagcaga 1081 ccgaactgat gaacatgacg aagaacatac gtcgcacgat ggagtgcaag ggcgagatct 1141 catcggagaa gcgtgaaaag tgcgaaatga tgcaggcgag cttcgacaag ctgctggcct 1201 ctgcccagac gctgtcggaa ctgttggccg aaccgctgcc agagctggcc aaggagtcgg 1261 agtgctgcag tccgggcaca gtgattgaca atatgctgga cagtgccgcc ttgggggtgc 1321 tcgatccttg gggcgatgag gagacacgtg ccttttacac agatctgccc gatctgcgcc 1381 agttcctacc cgacttctcc gcccccaagg tggacctaga gacgatggag gagcccagcg 1441 aactgaccga agaggccatc gatgccaatc tagatgccga aatggatatc gatgatccac 1501 cctccaccaa ttcggatccg ccgtctgaga acactgccga cgaccagccg ccaccaagca 1561 gcactccacc gctgctgctg gcccccacgg gcacctcgcc gaacgacttg aagccgcaga 1621 agatgtgcag cgctctgatg gaactgggac gccagcagct gcaaagccag ccgccgacgg 1681 cccagacaca gcaacagata cgccagcaat tcgatacatt tctcgtgaat ctcttcaatt 1741 gcgtcaacaa ggagcttatc gactcggccg ccatcgaatt tctgctcaac ttcaacacaa 1801 aacaccagcg caagaagctg acccgaacga ttttctcggt gcagcgcacc cgcctggata 1861 ttctgcccta tctgtcgcgc ttcatggccg tcgttcacat gtgcaacacg gacgtggccg 1921 ccgatctgtc cgagctgctg cgcaaggagt tcaagtggca tatacgcaaa aagaatcaac 1981 tgaatatcga gtccaagctg aagatagtgc gtttcattgg cgagcaggtg aaattcggcc 2041 tgttcaagaa attcgacgcc ctcggatgcc tcaagatgct gctgcgcgac tttcagcatc 2101 atcagatcga gatggcatgc gcatttgtgg aggtgactgg tgtatatctg tacaattgtc 2161 gcgactcccg tctgctcatg aacgtcttcc tcgaccaaat gctgcgcctg aagctggcca 2221 ccgccatgga ctcgcgtcat gcggcccaaa ttgaaagtgt ctactatctg gtgaagccgc 2281 cagagtcatc caagcgcgag tcagccccac gtcccgtcat tcacgagtac atacgccacc 2341 tgatcttcga ggagctgtgc aagcagaacg ttgagcgttg catcaaaatg ctgcgtcgca 2401 tcgactggct ggatccggat accagcggct atgccatcaa gtgcctgagc aaagcatttc 2461 tattgcgctt cccactcatc cgctgcctgg ccgatctggt gtccgggctc agttcgtacc 2521 agccgcgggc cgtcaccatt gtcattgata atgtgttcga ggatatacgc gccgggctcg 2581 agatacattc gccgcgcatg gcacagcgtc gcattgccat ggccaagtat ttgggcgaaa 2641 tgtacaacta caagctggtg gagtccacac acatactgaa taccctgtac tccattatct 2701 cgctgggtgt gtccacggat cagagtgtgg tgtcgccgtt ggatccgccg gagagcctgt 2761 ttcgcctgaa gctggcctgc atgctactcg acacctgcgg cccctacttc accagccagg 2821 ccacgcgcaa gaagctggac tatttcctga tgtttttcca gcactattac tggttcaaga 2881 agtcccatcc cgtcttctgt agggataatg agagctcggc ggatctcttt cccatactgg 2941 tcgatcacac atatcgcgac tgtctgggcg ctgtccggcc caagctgaag ctttatacta 3001 gcctggagca ggccaaggag tccattgatc agttgcagga gcgactcttt ccccatctga 3061 aatcgcatgc cagcaatccc aatctggcta gcctcaatga gatcagtgag ctggacgaag 3121 ggcccactga cgaggattct ggcagctcga acgatcagcg agagcgtcag gttgccggcc 3181 tggagccgga gcagagcaac gaatgtactg aaaatgagac agatgttcca atgggaccac 3241 cgccaccgcc ggaatggtcc aaggaggact tggacttcga gcagcaatat gaaagaatga 3301 cgacagattc gtatcaggaa cggctgaagg agcccgttaa ggctaccgcc aaggacatac 3361 ccgtacccat gatggcgcgt ctgcagaaga agtcatacga acagatcaca gccggatcac 3421 agatctcaaa ggtatccagc tgtccagatc tgcctccccg ctcgccagca cccgatctgc 3481 ccgagagctc ctcaggcaag acagcggcca gcaatgctgg tggaactggt ggaggaggag 3541 gagggggagg ggcaacgcca gctgcagcgg ctgctgttcc atttgtgctg atggtgcgcg 3601 gcaacagggg cggaaagcag caatttaaat cgtttgtctg tgcctcggac tcgcacttgg 3661 ccatcaatct gaaggtgcag gagcagaaaa tacgcgagga gaaggagaag gtgaagcgcc 3721 tcacactgaa catcaccgag cgcattgagg aggaggacta tcaggagtca ctactgccgc 3781 cgcagcatcg aaatttcact cagagctact accagaaacc caacagacaa aagttcaaac 3841 accagaaggg cgccccagat gcggatctca tatttcactg agacgcccag cagccacagc 3901 cctcaggccg acgacaacag accaatccaa gtcaagttaa caatcaggga atgcgctcac 3961 ggactcacac tggcatcgca gcaaccatgg ttaaagcggg aagatggatg gtgcctccaa 4021 caacagcaac aacaacattc aagtttacaa atagttgtcg aaatattgta acaggcaaca 4081 ggaatacgaa cgggagagag agagaaggtg ctccaagaga ccttgattct ccgatacaca 4141 ccgatccaca ccgtgttcca tgtgcaatcc tctggtacag ggacacacac acacggatat 4201 acagacgttt ttataccgta cttaagttga gctctcacca cacagcgctc gtccgcttta 4261 taccaacgcc agcgcgttag catgcccacg agattctaca ctcattgcca atgccatgcc 4321 acagatcgtg cggcatggca gctcaagata ttgtaaggct ctccacaacg ccccccgcca 4381 accccaaaca atatccttcg ctatggtgca catagagagc acagccgatc ccttaaaatt 4441 aaccatatac acatacatac atatagtacg tacaattgca tcgacttgtt ttgaaaacaa 4501 acctaccccc tactgatcga ttgatatata aaaagtgcat atataccata tacatatgtt 4561 ttttgtaaat atatacatac atacatacat atgtatccgt acacatacac gcccgtaact 4621 gaaaccgaaa ccacccaact gatggctgtt tcccctccgc ccacagagag caggaatata 4681 ctataccact tacttacatt agatcagggg aatatatcta atctatacag atttgatata 4741 tattcatatt tatacacgcg catgtatagt taatgggttt ccactccacc tccacctccc 4801 ctcccctcca ctcccttgct gtcttgactg gacatcgaca cactaaaata gtgcatacct 4861 tcccaagact cgtttgactt ttgaattttt atttgttttt cgttttattt tatttgctct 4921 aaaattagcg tcaaacaatt tgattttgat ttatttttaa atttcctctt catcttatcc 4981 cattgtatat tgccagtgtg ttggtgtatt cgttaaataa caatattcca aaatgtttta 5041 cgcttttttt ttatgcttct ttttttgttg cttgcttata caaatgtttt cgttcgtttg 5101 tttggtttta cttttaaaat gttaatcagt aatcagtaca aatggcaaaa gatataatat 5161 ttatatagta gtattaattc actattaatg aacgaaaatc gattaaaaac aaaaacacac 5221 acaaaagaga cg