PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361529 6700 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X42, mRNA.
ACCESSION XM_022361529
VERSION XM_022361529.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361529.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6700
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6700
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 47 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 7 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6551
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X42"
/protein_id="XP_022217221.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL
EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII
TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD
FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII
LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD
GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED
LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE
KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGI
PGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSH
QSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEH
RDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDR
GEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLC
IVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIF
DFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNL
TFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEW
IESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNK
IAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEHGDNELELGHDEILADGL
IKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNR
PFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDIL
DEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMS
SLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDF
VIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSI
FNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNS
AMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIF
GSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRP
RWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIF
SSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAK
VGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSG
INDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVG
ITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGT
QYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFAR
KGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGA
PSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVP
AAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVL
VESDGFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 690..1544
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1893..2393
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2598..3233
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3309..3968
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 3978..4793
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4761..4919
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4806..4817
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 4941..5693
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5724..5867
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa
421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg
481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc
541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa
601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga
661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca
721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg
781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt
841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa
901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt
961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg
1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc
1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca
1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc
1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg
1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc
1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct
1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag
1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga
1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag
1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag
1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg
1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg
1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac
1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca
1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgta cacgatccgg aatggacgtg
1921 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg
1981 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga
2041 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata
2101 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg
2161 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc
2221 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc
2281 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg
2341 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg
2401 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg
2461 aggacgatga tgaggatggg ccgacattaa aagacaaggc cctcgaagcg ctaatgaaag
2521 gcatcgaagt gttttgtgtg tgggactgtt gctgggtttg gttgaaattg caggagtgga
2581 tatcgctgat cgtcttcgat ccctttgtcg agctcttcat cacgctgtgc attgtggtca
2641 acacgatgtt catggccatg gaccatcacg acatgaacaa ggagatggaa cgcatcctta
2701 agtgcggaaa ttatttcttc acggcaacat tcgccattga ggcaaccatg aaactgtgcg
2761 ccatgagccc caaatactat ttccaggagg gctggaacat ctttgacttc atcattgtgg
2821 cactctcatt gctggagctg ggcctcgagg gcgttcaggg cctctccgtc ttgcgttcgt
2881 ttcgtttgct gcgtgtattc aaattggcca agtcctggcc aacacttaat ttactcattt
2941 cgattatggg acgcaccatg ggcgctttgg gtaatctgac atttgtactt tgcattatca
3001 tcttcatctt tgcggtgatg ggaatgcaac tgttcggaaa gaattatcat gataacaagg
3061 atcgcttccc ggacggtgac ctgccccgct ggaacttcac cgacttcatg cacagcttca
3121 tgatcgtgtt tcgggtgcta tgcggcgagt ggatcgagtc catgtgggac tgtatgcacg
3181 tgggcgatgt atcgtgcatt ccattcttct tggccaccgt tgtcatcggc aatttagtgg
3241 ttcttaacct tttcttagcc ctgcttttgt caaattttgg ttcatctagc ttatcagcgc
3301 cgacagccga taacgatacc aataaaatag ccgaggcctt caatcgaatt gggcgattta
3361 aaagttgggt taagcgtaat attgctgatt gtttcaagtt aatacgtaac aaattgacaa
3421 atcaaataag tgatcaacca tcagagcacg gcgacaacga gctggagctg ggccacgacg
3481 agatactcgc cgacgggctc atcaagaagg gcatcaagga ggcgacacag ctggaggtgg
3541 ccatcggtga tggcatggag ttcacgatac acggcgacat gaagaacaac aagccgaaga
3601 aatccaaata tctaaataac gcaacggacg acgacactgc cagcattaac tcatatggta
3661 gccataagaa tcgaccattc aaggatgaga gccacaaggg cagcgccgag acgatggagg
3721 gcgaggagaa gcgggacgcc agcaaggagg atttaggtat cgatgaggag ctcgacgagg
3781 agggcgaatt ggaggagggc ccgctcgacg gcgatatcat catacatgcc aacgatgagg
3841 atatactcga tgaatatcca gctgattgct gccccgattc gtactataag aaatttccga
3901 tcttagccgg tgatgatgac tcgccgttct ggcaaggatg gggcaattta cgactgaaaa
3961 cttttcaatt aattgaaaat aaatattttg aaacagctgt tatcactatg attttaatga
4021 gtagcttagc tttggcatta gaagatgtac atctgccaca aagacccata ctgcaggata
4081 ttttatacta tatggacaga atatttacgg ttatattctt cttggaaatg ttaatcaagt
4141 ggctggcgct cggcttcaaa gtgtacttca cgaacgcgtg gtgctggctc gatttcgtca
4201 ttgtcatggt atcgcttatc aacttcgttg cttcacttgt tggagctggt ggtattcaag
4261 ccttcaagac tatgcgaacg ttaagagcac tgagaccact acgtgccatg tcccgtatgc
4321 agggcatgag ggtcgtcgtt aatgcgctgg tacaagctat accgtccatc ttcaatgtgc
4381 tattggtgtg tctaatattt tggctaattt ttgccataat gggtgtacag ctttttgctg
4441 gaaaatattt taagtgcgag gacatgaatg gcacgaagct cagccacgag atcataccaa
4501 atcgcaatgc ctgcgaaagc gagaactaca cgtgggtgaa ttcagcaatg aatttcgatc
4561 atgtaggtaa cgcgtatctg tgccttttcc aagtggccac cttcaaaggc tggatacaaa
4621 tcatgaacga tgctatcgat tcacgagagg tggacaagca gccaattcgt gaaacgaaca
4681 tctacatgta tttatatttc gtattcttca tcatatttgg atcatttttc acactcaatc
4741 tgttcattgg tgttatcatt gataatttta atgagcaaaa gaaaaaagca ggtggatcat
4801 tagaaatgtt catgacagaa gatcagaaaa agtactataa tgctatgaaa aagatgggct
4861 ctaaaaaacc attaaaagcc attccaagac caaggtggcg tccacaagca atagtctttg
4921 aaatagtaac cgataagaaa ttcgatatag tcataatgtt attcattggt ctgaacatgt
4981 tcaccatgac actcgatcgt tacgatgcgt cggacacgta caacgcggtc cttgactatc
5041 tcaatgcgat attcgtagtt attttcagtt ccgaatgtct attaaaaata ttcgctttac
5101 gatatcacta ttttattgag ccatggaatt tatttgatgt agtagttgtc attttatcca
5161 tcttaggtct cgtacttagc gatattatcg agaaatactt cgtatcgccg acactgctcc
5221 gagtggtgcg cgtggccaaa gtgggtcgcg tactgcgtct ggtgaagggc gccaagggta
5281 tacgaacgct gctgttcgcc ctggccatgt cgctgccggc gctgttcaac atctgcctgc
5341 tgctgttcct ggtcatgttc atcttcgcga tattcggcat gtcgttcttc atgcatgtga
5401 aggagaagag cggcatcaac gacgtctaca acttcaagac gttcggacag agcatgatcc
5461 tgctctttca gatgtctacc tcagccggtt gggatggtgt actcgacgcc attatcaatg
5521 aggaagcatg cgatccaccc gacaacgaca aaggctatcc gggcaattgt ggttcagcga
5581 ccgttggaat aacgtttctc ctctcatacc tagttataag ctttttgata gttattaata
5641 tgtacattgc tgtcattctc gagaactata gtcaggccac cgaggatgtg caggagggtc
5701 tcaccgacga cgattacgat atgtactatg agatctggca acagttcgat ccggagggca
5761 cccagtacat acgatacgac cagctgtccg agttcctcga cgtgctggag cccccgctcc
5821 agattcacaa gcccaacaag tacaaaatca tatcgatgga catacccatc tgtcgcggtg
5881 acctcatgta ctgtgtggac atactggacg cactgaccaa agactttttc gcgcgcaaag
5941 gcaatcccat tgaggagacg ggcgagattg gtgagattgc cgccaggccg gacaccgagg
6001 gctacgagcc cgtctcctcc accctctggc gacagcggga ggagtactgt gcccgcctca
6061 ttcaacatgc ctggcgcaag cataaaacgc gcgccgaggg cggtggtgca ccgtccgacg
6121 cggaaggcga cggccccgaa gatggtgatg cgggtggcgg tggcggggcg gcgctgatgc
6181 tgggtgttct ggatgttcca gatgctgctg gcgatgcagc aaccactggc tcccatgacg
6241 gggcaacggc actcgatccc gagaccgatc catcgggagt accggcggca gcggcggtgg
6301 ccccacagcc agccggtgac ggcggcgagg gaccggatgg aggagcaaca gccgatccgc
6361 acgagagcaa tgtaaatagt ccgacgatgg acggcgcgac ggcgggcagc ccgggcgcag
6421 ggagcgctgg cagcactggc cgacagacgg ccgttctcgt ggagagcgat gggtttgtga
6481 ccaagaacgg gcacaaggtt gtaatacact cgcgttcgcc gagcataacg tcgcgcacgg
6541 cggatgtctg agccaggcct cgcccccccc tccaagatgc acgcgagtat taggtgcagg
6601 tgcagatgca gtgcagtggt ggtgccacaa caacaacaac aacaacagca ggtgccactg
6661 gtagctgcaa ttgcaactgc aacagcagca acaggaagaa