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LOCUS XM_022354812 6707 bp mRNA linear INV 14-MAY-2021 (LOC111066310), mRNA. ACCESSION XM_022354812 VERSION XM_022354812.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq; corrected model. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022354812.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-319 JAECWW010000165.1 2450418-2450736 320-711 JAECWW010000165.1 2452121-2452512 712-958 JAECWW010000165.1 2459212-2459458 959-1237 JAECWW010000165.1 2459522-2459800 1238-1913 JAECWW010000165.1 2461079-2461754 1914-2356 JAECWW010000165.1 2461815-2462257 2357-2785 JAECWW010000165.1 2462344-2462772 2786-5025 JAECWW010000165.1 2462853-2465092 5026-5284 JAECWW010000165.1 2465171-2465429 5285-5413 JAECWW010000165.1 2465517-2465645 5414-5880 JAECWW010000165.1 2466270-2466736 5881-5977 JAECWW010000165.1 2466739-2466835 5978-6707 JAECWW010000165.1 2467384-2468113 FEATURES Location/Qualifiers source 1..6707 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6707 /gene="LOC111066310" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:111066310" CDS 523..5952 /gene="LOC111066310" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: tyrosine-protein phosphatase 10D" /protein_id="XP_022210504.2" /db_xref="GeneID:111066310" /translation="MDCAAQQQQRRSQPQQQQQEEAPAEAEQQTHGRRRRRQQHTQIQ PSQPHMWIVLSILTIFWPQYSSGADLVINVPNASSNDNAFYRIDYSPPFGYPEPNTTI PASEIGKDIKFSRALPGTEYNFWLFYTNSTHQELLTWTVNITTAPDPPASLSVQLRSS KSAFITWKPPRTGNYSGFRIKVLGLTDLPFNRSYALDDRETLQLSAKELTPGGSYQVQ AYTIYQGKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPPFPAGIYTHYKVSI TPDDAIESVLYVEREGEPPGPAQAAFKGLVPGREYNISVQTVSEDETSSVPTTARYLT VPERVLNVTFDEAHTTTSSFRVRWEPPRTYSEFDGYQVMLSTSRRIFNVPRTDATSVT FDYPDILEPGRTYDVVVKTIADNVNSWPATAVVTLRPRPVRTLGGFLDDRSNALHISW EPAETGKQDGYRIRYHEQTNDSEVAVASALDTVIDTALTEYTLDSLQAGRRYLVGVQA LSNGVASNVTYMTRYTRPAAPIIQELRSIPLGLNISWKSDVNSQQDRYEVHYQRNGTR EERTIATNETALTINYLHAGSGYEIKVYAISYGIRSEPHSYFQAVFPKPPLNLTLQTV HTNLVVLHWQPPEGSDFSEYVVRYRTAASPWQRLANVHESHARIEDMHYGERYLIQVN TISFGVESPSPLELNVTMPPHPVSNVVPLVDSRNLTLEWPRPDGHIDYYTLKWWPTDE VDRVEYKNVTQLEDLTSPSVRIPIEDLSPGRQYRFEVQASSNGIRSGITHLSTRTMPL IQSDVFISNARSSDGGGNRAKAITKGNGNGNGEEETITLSYTPTPASSTRFDIYRFSM GDPQIKDKEKMANDTERKLTFTGLSPGRLYNVTVWTVSGGVASLPIQRLYRLHPLPIS GLEATQVAAREISLRWTAPAGEFTDFELQYLSADEEAPQLLQNVTRLTQMTLHGLRPY HNYTFTVVVRSGSSSGSSTGREDGLAPPPNLMRSSAPISASYQTLAAVPGRVDYFQPS DVQPAEVSFVWLLEAREQHGPIDYFRISCQNIDDAADVVASHEFPVNATHGRIDNLVP GNKYIFRLQAKSALGFGAERDHVQVMPILAPPVPGPNVTPLEVGRTSSTIEISYRQSY FSNAHGLVRFYTIIVAEDVGKNASGLEMPSWHDVQSYAVWLPYQAIEPYNPFGGGAAS NASVVRRSMSMSSGSVMERFTIGSANCDKQRTGYCNGPLRAGTTYRIKVRAFTDDDKF TDTAYSVPITTDRNDTLIVAVTMVSLVLIAAILLVAYCQRRCHLIRRATKLSRMQDEL AALPEGYVTPNRPIHVKDFGEHYRLMSADSDFRFSEEFEELKHVGRDQACSFANLPCN RPKNRFTNILPYDHSRFKLQPVDDDDGSDYINANYMPGHNSPREFIVTQGPLHSTREE FWRMCWESNSRAIVMLTRCFEKGREKCDQYWPVDRVAMFYGDIKVQLIIDTHFRDWSI SEFMVSRNCESRIMRHFHFTTWPDFGVPEPPQSLVRFVRAFRDAIGTDMRPIIVHCSA GVGRSGTFIALDRILQHIHKSDYVDIFGIVFAMRKERVFMVQTEQQYVCIHQCLLAVL EGKEHLLADSLELHANDGYEERPNQQLQQQHQQQQQMKPKMGTLGAVMGAKTLRASLA LAEELDQELMGKPEEEHAMAEVSLSDSINKPNEKADQDAEDDEEDDDDDDDDDDDDDD DDQQPLNNETTATLSTASSSSISEDQVDNVEQQQQQQHNKQRDQGRICTKSDADTDED DTDEDEDKEDGDGAKRREADEDGWW" misc_feature 961..1236 /gene="LOC111066310" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:238020" misc_feature order(961..963,1153..1155,1198..1200) /gene="LOC111066310" /note="Interdomain contacts [active]" /db_xref="CDD:238020" misc_feature order(1201..1206,1210..1215) /gene="LOC111066310" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature order(1240..1242,1441..1443,1486..1488) /gene="LOC111066310" /note="Interdomain contacts [active]" /db_xref="CDD:238020" misc_feature 1249..1494 /gene="LOC111066310" /note="Fibronectin type III domain; Region: fn3; pfam00041" /db_xref="CDD:394996" misc_feature 1468..>2778 /gene="LOC111066310" /note="Fibronectin type 3 domain [General function prediction only]; Region: FN3; COG3401" /db_xref="CDD:442628" misc_feature order(1489..1494,1498..1503) /gene="LOC111066310" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature 3022..3210 /gene="LOC111066310" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cl21522" /db_xref="CDD:473895" misc_feature 3256..3453 /gene="LOC111066310" /note="Fibronectin type III domain; Region: fn3; pfam00041" /db_xref="CDD:394996" misc_feature 3583..3861 /gene="LOC111066310" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:238020" misc_feature order(3583..3585,3784..3786,3829..3831) /gene="LOC111066310" /note="Interdomain contacts [active]" /db_xref="CDD:238020" misc_feature order(3832..3837,3841..3846) /gene="LOC111066310" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature 3952..4338 /gene="LOC111066310" /note="TM proximal of protein tyrosine phosphatase, receptor type J; Region: PTP_tm; pfam18861" /db_xref="CDD:465889" misc_feature 4669..5334 /gene="LOC111066310" /note="catalytic domain of R3 subfamily receptor-type tyrosine-protein phosphatases and similar proteins; Region: R3-PTPc; cd14548" /db_xref="CDD:350396" ORIGIN 1 gccgtacgac aacaaatact tcgatcgcgg cggcggtata tttggatctc gtgctgttgt 61 gcgaaatgtc agtaactagt ttctggtaaa tctcgctgta aattcgaccg ttttctgtaa 121 acagtttggc aagcgagatt tttttttgtg tgtgtgtccc ttttttttaa cctagtgttt 181 acgacgcgct tgaattagta cgcgatcgtt gttatttatt tggatttact gtttgtgctg 241 ccgccgccac cgctgccagc gtcatcgtgt acgccgccgt cgctgccact gcgcagacgt 301 tgggcgggat ttgtggcagc tccaccccca ttgaaaacaa gtgcaatatt aattaagtaa 361 tgaccggttg agcacatgta catatcgtat gtacatgcat acataaatgc atatatagag 421 tacatacaga tgcccggata aatgacaaat gatgttataa cagcaaatag caaaagcaac 481 agcaaattct cgcacatctc cgggttttac tgtacctgaa atatggactg cgcagctcaa 541 caacaacagc ggcggtcaca accgcaacaa caacaacaag aagaagcacc agcagaggca 601 gaacagcaga cacatggacg aagacggcgg cgacaacaac atacacaaat acagccgtcg 661 cagccacaca tgtggattgt attgagcatt ttgacaatat tttggccgca gtattcgagt 721 ggtgctgatc tggtgatcaa tgttcccaat gcgagcagca atgacaatgc cttctacagg 781 atcgactaca gtccgccgtt tggctatccg gaaccgaaca ccacgatacc ggccagcgag 841 attggcaagg acattaagtt ctcccgtgcc ctgcccggca ccgagtacaa cttttggctg 901 ttttacacaa actccacgca ccaggagctg ctcacctgga cggtgaacat aacaactgct 961 cccgatccgc cagcgagtct gagcgtacag ttgcgctcca gcaagagtgc attcatcaca 1021 tggaagcccc caaggacggg caactattcg ggctttcgca tcaaggtgct gggcctcacc 1081 gatctgccct tcaatcggag ctatgcgctg gacgacagag agacgctcca gttgtcggcc 1141 aaggagctga caccgggcgg cagctaccaa gtgcaggcct ataccatcta ccagggcaaa 1201 gagtcggtgg cctatacgag tcgcaacttt accacaaagc cgaatacgcc ggggaagttc 1261 attgtgtggt tccgaaacga gacgacgctc ctggtgctgt ggcagccgcc ctttccggct 1321 ggcatctaca cccactacaa ggtctcgatc acaccggacg atgccatcga gagcgtgttg 1381 tatgtggagc gcgagggcga gccgccgggt ccggcgcagg cagcattcaa gggcctcgtc 1441 ccagggcggg aatacaatat atcggtgcag acggtgtccg aggatgagac ctcgtctgtg 1501 cccaccacag cccgctacct cacggtgccg gagcgtgtgt tgaatgtgac cttcgacgag 1561 gcccacacca ccaccagctc gttccgggtg cgctgggagc cgccgcgcac ttacagcgaa 1621 ttcgatggct accaggtgat gttgtcgaca tcgcggcgaa tcttcaatgt gccgcgcacg 1681 gacgccacca gcgtcacctt cgactacccc gatattctgg agccgggacg cacctacgat 1741 gtggtggtga agaccattgc cgacaatgtc aactcgtggc cggccactgc ggtggtgacg 1801 ctgcgtccac gacccgttcg cacattgggc ggcttcctgg acgatcgcag caatgcgctg 1861 cacatctcct gggagccggc ggagactgga aaacaggatg gttatcgtat tagataccat 1921 gagcaaacga acgacagcga agtggctgtg gcatcagcgc tggacacagt gatagacacc 1981 gctctcaccg agtacacgct ggactctctg caggcgggta gacgctatct ggtcggggtg 2041 caggccctct ccaatggcgt cgcctcgaat gtcacataca tgacacgcta cacacggccg 2101 gcagcgccca tcatccagga gctgcgcagc atacccttgg gcctgaatat cagctggaag 2161 agcgatgtga attcacagca ggatcgctac gaggtgcact accagcggaa tggtacgcgc 2221 gaggagcgca ccatagccac caacgagacg gcactgacga tcaactatct gcacgcgggc 2281 tccggctatg agatcaaggt gtacgccatt agctatggca tacgcagtga gccgcactcc 2341 tacttccagg ccgtctttcc caagccgccg ctgaatctca cactgcaaac ggtgcacaca 2401 aatctggtgg tgctgcattg gcagccgccg gagggcagcg atttcagcga gtatgtagtg 2461 cgatatcgca cggctgcatc gccgtggcag cggctggcca atgtccatga gagtcatgcc 2521 cgcatcgagg atatgcacta cggggagcga tatctcatcc aggtgaacac catcagcttt 2581 ggggtggaga gtcccagtcc actggagctg aatgtcacca tgccgccgca tccagtgtcg 2641 aatgtggtgc cgctggtgga ctcgcgcaac ctcaccctgg aatggccccg tcccgatggc 2701 catatcgatt actataccct caagtggtgg cccaccgatg aggtggatcg tgtcgaatac 2761 aagaatgtca cacagctgga ggatttgaca tcgcccagcg tgcggatacc cattgaggat 2821 ttgtcgcccg gcagacagta cagatttgag gtgcaggcca gctccaatgg catacgatcg 2881 ggcatcacgc atctctccac gcgcaccatg cccctcatcc agtcggatgt gttcatttcg 2941 aatgcccgat catcagacgg aggggggaac agggcgaaag cgataacgaa aggcaacggc 3001 aatggcaatg gcgaggaaga gaccatcaca ttgagctaca caccgacacc ggcatcgagc 3061 actcgcttcg acatctatcg cttctcgatg ggcgatcccc agatcaagga caaggagaag 3121 atggccaacg atacggaacg aaagctgacg tttacgggtc tgtcgccggg acgtctgtac 3181 aatgtgaccg tgtggacagt gagcggtggc gtggccagcc tgcccatcca gcgcctatac 3241 aggctccatc cgttgccgat cagcggcctg gaggccacac aggtggcggc acgcgagatc 3301 agccttcgct ggacggcccc cgcgggcgag tttaccgact ttgagctgca gtatctcagc 3361 gccgacgagg aggcgccgca gctgctgcag aatgtgacga ggctcacaca gatgacgctc 3421 catgggctac ggccgtacca caattatacc ttcacggtgg ttgtgcgctc cggcagcagc 3481 agcggcagca gcacgggtcg agaggatgga ctggcaccgc cgcccaacct gatgcgcagc 3541 agtgccccga tctcggccag ctatcagaca ctggccgcgg tgcccggccg cgtcgactac 3601 ttccagccga gcgatgtgca gcccgcggag gtgagctttg tgtggctgct ggaggcgcgt 3661 gagcagcacg gacccatcga ttatttccgc atcagctgcc agaacatcga cgatgcggcg 3721 gatgttgtgg ccagccacga gtttccggtc aacgccaccc acgggcggat cgataatctg 3781 gtgcccggca acaagtacat ctttcgcctt caagcgaaat ccgctttggg tttcggcgcc 3841 gagcgcgacc atgtccaggt aatgcccatt ctggcgccgc ctgtcccggg gccgaatgtg 3901 acgcccctgg aggtggggcg gacgagcagc accattgaga taagctaccg gcagagctac 3961 ttctccaatg cccatggcct ggtgcgcttc tacaccatca ttgtggcgga ggatgtgggc 4021 aagaatgcgt ccggcctgga gatgcccagc tggcacgatg tgcagtcgta tgcggtgtgg 4081 ctgccctatc aggccatcga gccctacaat ccctttggag ggggggccgc gtcgaatgcg 4141 agtgtcgtcc gcaggagcat gagcatgagc agtggctcag tcatggagcg cttcacgatc 4201 ggctcggcca actgcgataa acagcgcact ggatattgca atgggccgct gcgggcgggc 4261 accacatacc ggatcaaggt gcgcgccttc accgacgacg acaagttcac ggacaccgcg 4321 tacagtgtgc ccatcacaac ggatcgcaac gacacgctca ttgtggctgt gacgatggtg 4381 tcgctggtgc tgatcgccgc cattctactg gtcgcctact gtcagcggcg ctgtcatctg 4441 attcgtcgcg ccaccaagct gtcgcgaatg caggacgagc tggccgctct gcccgagggc 4501 tatgtgacgc ccaatcggcc cattcatgtg aaggacttcg gggagcacta tcgcctgatg 4561 tccgccgact cggactttcg cttcagcgag gagttcgagg agctgaagca tgtgggacgc 4621 gaccaggcct gcagtttcgc caatctgccg tgcaatcggc ccaagaatcg cttcaccaac 4681 atcctgccct acgaccattc acgcttcaag ctgcagccgg tggacgatga cgatggctcg 4741 gactatatca atgccaacta catgcccggc cataattcgc cgcgtgagtt tatcgtcacc 4801 caggggccgt tacactcgac gcgcgaggag ttctggcgca tgtgctggga gagcaactcg 4861 cgggccattg tcatgctgac gcgctgcttc gagaaggggc gtgaaaagtg cgaccagtat 4921 tggcccgtcg atcgtgtggc catgttctat ggcgacatca aggtccagct gatcatcgat 4981 acgcatttcc gggactggag catctccgag ttcatggtct ccaggaactg cgaatcgcgg 5041 atcatgaggc acttccattt caccacttgg ccggactttg gggtgccgga gccgccgcag 5101 tcgctggtgc gtttcgtgcg tgcctttcgc gatgccatcg gcaccgatat gcgtcccatt 5161 attgtccact gcagcgctgg cgtcggcaga tcgggcacat ttattgccct cgatcggata 5221 ctgcagcaca tccacaagtc cgactatgtg gatatatttg gcattgtgtt tgccatgcgc 5281 aaggagcgcg tatttatggt gcagacggaa cagcagtatg tgtgcatcca tcagtgcctg 5341 ctggcggtgc tcgagggcaa ggagcatctg ctggccgatt cgttggagct gcatgccaat 5401 gatggctacg aggagcgccc gaatcagcaa cttcagcagc agcaccagca gcagcagcaa 5461 atgaaaccca aaatgggaac ccttggagcg gtcatgggag ccaagacctt gagggcatca 5521 ctggcactgg ccgaggagtt ggaccaggag ttgatgggaa agccggagga ggagcacgcg 5581 atggcagaag tgtcactgtc ggacagcatc aataaaccga atgaaaaagc tgatcaggat 5641 gccgaggatg acgaggaaga tgatgacgat gacgatgatg atgatgatga tgatgatgat 5701 gatgatcagc agccattgaa caatgagacg acagccacac tgtctacagc cagcagtagc 5761 agtattagtg aggatcaggt ggataatgtg gaacagcagc agcagcagca gcacaacaag 5821 cagcgtgacc agggaagaat ttgcaccaag tccgatgcag ataccgacga agatgatacg 5881 gacgaggatg aggacaagga agatggagat ggggccaagc gtcgcgaggc tgatgaggat 5941 ggatggtggt agtgataaga gaaaggtccg cttttagatg acgaaggaat cgccgagacg 6001 ggcatctaac gaatggaaat caatggatgt atcacacaca caaacacaca tcgatatata 6061 tatatattat atacagtagt agtagctatt agatattagc tattagtgtt agttacatat 6121 ttttttaaca tatctacttg tacgtaaaat ctgcctgtga tgtgctagat gtgatttgtc 6181 tacagcggca tactacggag ctgctgggga gaggagaaga gtcagagaag agtctgtctg 6241 ccattatgct cgccgctcca tgccgccaaa actagataaa aaaccacaag agcgtaacct 6301 taagcttcag gtgtaaccat tatcccttat agtcccccac cccccctagt ttgttctcct 6361 attatccaga aattgtgtat agtttttgta aatttattct gtgccccctt tttgatcagc 6421 aacgatcgat gttgtgcgac tactactcta attatttgta ttaccctccc cacgcccacg 6481 aactacgtat tgtacgatca attgtgtttt atgttattat tattattatt atgtagctta 6541 aatacgtttt atagttagac tttagtcagc atttagtcag agaaatgttt agctctagca 6601 acagtctccg gcctgtgtgt cctggccata taggagatgg ctcatggctc aggggcagca 6661 ggcagcagga acagcaatag ctagcttttt agcatttatt ttaactt