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LOCUS XM_022354684 2074 bp mRNA linear INV 14-MAY-2021 (LOC111066236), mRNA. ACCESSION XM_022354684 VERSION XM_022354684.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022354684.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2074 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..2074 /gene="LOC111066236" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns" /db_xref="GeneID:111066236" CDS 193..1980 /gene="LOC111066236" /codon_start=1 /product="transcription factor grauzone" /protein_id="XP_022210376.1" /db_xref="GeneID:111066236" /translation="MICRLCLRSINPSNAVFLFETNETMAETILVKMIAKFLQLEITP DDSISTSVCTECCEHLEDFNTFWQLVEQKQGTLKKEFLTVDVDCVAMKWTGEVDVDVN IDELPLVAVEMDEKPLDMHNLSMLGSVLDVNVDSVEVPQAPPVDIKIQQTDYLSEEDE HPPHLDATDDSEFECEAGPQEDTSDDEPLVKLQDKLKPKRKSHVRATKTLEDSCSLGG QELNYLLGRGDGDGEGEGSKGRRKKAPGQRSLPTEVQESELQAALERKPKGCSRAQLA KRYEEVIASYMNADCDLCDFSAKYLSELKVHFLEVHQREFYIKCCNKVFTRASKLMDH IRKHVNPKLFTCSICQKTLNSQDYLATHIETVHNKVEKIDKVLQFPCSKCERTFSSER RLANHLAKHDTATLEHICHICHKNFANVHRLRRHIQSIHEDLHRHVCDICGKKFKFKP SFERHLREHQGVVAPAMQCPVCGVWLKNEHSLRLHRFTHDSTNTDCPHCSKTCNSRTA LRAHIKYAHKLTTSFQCTYCEKTFKQQRNLDEHLAIHTGLQLYNCPHCPKECRSRSNM YVHIKQRHAEEWLTAKMARSHNPQFKPHT" misc_feature 196..429 /gene="LOC111066236" /note="Zinc-finger associated domain (zf-AD); Region: zf-AD; smart00868" /db_xref="CDD:214871" misc_feature 1063..1128 /gene="LOC111066236" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1153..>1320 /gene="LOC111066236" /note="N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Region: SUF4-like; cd20908" /db_xref="CDD:411020" misc_feature 1153..1206 /gene="LOC111066236" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 1153..1206 /gene="LOC111066236" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1159..1161,1165..1167,1171..1173,1177..1182, 1189..1194,1201..1203,1243..1245,1249..1251,1261..1266, 1273..1278,1288..1290,1348..1350,1354..1356,1360..1362, 1366..1371,1378..1383,1390..1392) /gene="LOC111066236" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature order(1159..1161,1177..1179,1198..1200,1201..1203, 1225..1227,1246..1248) /gene="LOC111066236" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:411020" misc_feature <1222..1776 /gene="LOC111066236" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 1228..1293 /gene="LOC111066236" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 1228..1293 /gene="LOC111066236" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1333..>1485 /gene="LOC111066236" /note="N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Region: SUF4-like; cd20908" /db_xref="CDD:411020" misc_feature 1333..1395 /gene="LOC111066236" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 1333..1395 /gene="LOC111066236" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1348..1350,1366..1368,1390..1392,1399..1401, 1438..1440) /gene="LOC111066236" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:411020" misc_feature 1420..1485 /gene="LOC111066236" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 1420..1485 /gene="LOC111066236" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1507..1569 /gene="LOC111066236" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1597..1659 /gene="LOC111066236" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1678..1743 /gene="LOC111066236" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1693..1695,1699..1701,1705..1707,1711..1716, 1723..1728,1738..1740,1780..1782,1786..1788,1798..1803, 1810..1815,1822..1824,1864..1866,1870..1872,1876..1878, 1882..1887,1894..1899) /gene="LOC111066236" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1765..1827 /gene="LOC111066236" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1849..1905 /gene="LOC111066236" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN 1 taataatttg ctgagttgag ttataatatt agcaacaaaa aataaaaaat tagcgttgcc 61 gtaccacaat cactggctgc ccacccacaa ttatatccat ctctaatttc aaattacatc 121 gctaattatg ttgtttacag cagtagcagc agctaaaaag tgcacttaac tttttgtatt 181 ttcctagcaa agatgatttg cagattatgc ctgcgcagca taaatcccag caatgccgta 241 ttcctgttcg aaacgaacga gacgatggcg gagacgattc tggtcaagat gattgccaaa 301 ttcctgcaac tggagatcac gcccgacgac agcatctcga cgagcgtctg caccgaatgc 361 tgtgagcatc tggaggactt caacaccttc tggcagctgg tggaacagaa gcagggaact 421 ctcaaaaagg agtttctcac cgtcgacgtg gactgcgtgg cgatgaagtg gacgggcgag 481 gtggatgtgg acgtcaacat tgacgagctg ccgctggtgg cagtcgaaat ggacgagaag 541 cctctcgata tgcacaacct cagcatgctg ggcagtgttc tggatgtgaa tgtggacagt 601 gtggaggtgc cacaggcacc gccagtggat atcaaaattc agcagaccga ttacttgtcc 661 gaggaagacg aacatccgcc ccatctcgat gcgactgatg acagtgagtt cgagtgcgag 721 gcaggccccc aagaagacac ctcggatgat gagccgctgg tcaagctgca ggacaagctg 781 aagcccaagc gcaagtctca cgtccgcgcc accaagacac tggaagacag ctgctcactc 841 ggaggtcagg agctgaatta tctgcttgga cggggcgatg gcgatggtga aggcgagggc 901 agcaaagggc gtcgcaaaaa ggcgcccggc cagcggagcc tacccacgga ggtgcaggaa 961 agcgaactgc aggcagcgct cgaacgcaag cccaagggct gctcgcgggc ccagctggcc 1021 aagcggtacg aggaagtcat tgccagctac atgaacgccg actgcgacct gtgcgacttc 1081 agcgccaagt atctgtccga gctgaaggtg cactttctgg aggtccacca gcgcgagttc 1141 tacataaagt gctgcaacaa ggtcttcaca cgcgcctcca aactgatgga tcacatacgc 1201 aagcacgtta atccgaagct ctttacctgc tccatctgcc agaagacgct caattcgcag 1261 gactatctgg ccacccacat cgagacggtg cacaataagg tggagaaaat cgacaaggtg 1321 ctgcagtttc cctgctccaa gtgcgagcgc actttcagca gtgagcgacg actggccaat 1381 catctcgcca agcatgacac ggcgacgctg gagcacatct gccacatatg ccataaaaat 1441 tttgccaatg tccatcggct gcgccggcac atccagtcca tacacgagga tctgcaccgg 1501 catgtgtgcg acatctgcgg caagaagttc aaattcaagc cctcgttcga gcggcatctg 1561 cgcgagcacc agggcgtggt ggcaccggcc atgcagtgcc ccgtctgcgg tgtctggctg 1621 aagaacgagc acagtctgcg gctgcatcgc ttcacgcacg acagcaccaa cacggactgt 1681 ccccactgct cgaagacatg caactcgaga acggcgctgc gcgcccacat caagtatgcc 1741 cacaagctga cgaccagctt ccagtgcaca tactgcgaga agacctttaa gcagcagcgc 1801 aacctggacg agcatctggc catccacacg ggcctccagc tctacaactg tccgcactgc 1861 cccaaggagt gccgctcccg gtccaacatg tacgtgcaca tcaagcagcg gcatgcggag 1921 gagtggctca ccgccaagat ggcccgctcc cacaatccgc agttcaagcc gcacacctaa 1981 tgcccaagcc tagcttatat cttagcctag ttagtccact aaataatgca ctaaatacac 2041 gacacaaggt agtagtagca gtctataaga gatt