PREDICTED: Drosophila obscura transcription factor grauzone
LOCUS XM_022354684 2074 bp mRNA linear INV 14-MAY-2021
(LOC111066236), mRNA.
ACCESSION XM_022354684
VERSION XM_022354684.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022354684.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2074
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..2074
/gene="LOC111066236"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 2 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 17 samples with support for all annotated
introns"
/db_xref="GeneID:111066236"
CDS 193..1980
/gene="LOC111066236"
/codon_start=1
/product="transcription factor grauzone"
/protein_id="XP_022210376.1"
/db_xref="GeneID:111066236"
/translation="MICRLCLRSINPSNAVFLFETNETMAETILVKMIAKFLQLEITP
DDSISTSVCTECCEHLEDFNTFWQLVEQKQGTLKKEFLTVDVDCVAMKWTGEVDVDVN
IDELPLVAVEMDEKPLDMHNLSMLGSVLDVNVDSVEVPQAPPVDIKIQQTDYLSEEDE
HPPHLDATDDSEFECEAGPQEDTSDDEPLVKLQDKLKPKRKSHVRATKTLEDSCSLGG
QELNYLLGRGDGDGEGEGSKGRRKKAPGQRSLPTEVQESELQAALERKPKGCSRAQLA
KRYEEVIASYMNADCDLCDFSAKYLSELKVHFLEVHQREFYIKCCNKVFTRASKLMDH
IRKHVNPKLFTCSICQKTLNSQDYLATHIETVHNKVEKIDKVLQFPCSKCERTFSSER
RLANHLAKHDTATLEHICHICHKNFANVHRLRRHIQSIHEDLHRHVCDICGKKFKFKP
SFERHLREHQGVVAPAMQCPVCGVWLKNEHSLRLHRFTHDSTNTDCPHCSKTCNSRTA
LRAHIKYAHKLTTSFQCTYCEKTFKQQRNLDEHLAIHTGLQLYNCPHCPKECRSRSNM
YVHIKQRHAEEWLTAKMARSHNPQFKPHT"
misc_feature 196..429
/gene="LOC111066236"
/note="Zinc-finger associated domain (zf-AD); Region:
zf-AD; smart00868"
/db_xref="CDD:214871"
misc_feature 1063..1128
/gene="LOC111066236"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1153..>1320
/gene="LOC111066236"
/note="N-terminal domain of Oryza sativa transcription
factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
SUF4 (AtSUF4), and similar proteins; Region: SUF4-like;
cd20908"
/db_xref="CDD:411020"
misc_feature 1153..1206
/gene="LOC111066236"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:411020"
misc_feature 1153..1206
/gene="LOC111066236"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1159..1161,1165..1167,1171..1173,1177..1182,
1189..1194,1201..1203,1243..1245,1249..1251,1261..1266,
1273..1278,1288..1290,1348..1350,1354..1356,1360..1362,
1366..1371,1378..1383,1390..1392)
/gene="LOC111066236"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1159..1161,1177..1179,1198..1200,1201..1203,
1225..1227,1246..1248)
/gene="LOC111066236"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:411020"
misc_feature <1222..1776
/gene="LOC111066236"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 1228..1293
/gene="LOC111066236"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:411020"
misc_feature 1228..1293
/gene="LOC111066236"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1333..>1485
/gene="LOC111066236"
/note="N-terminal domain of Oryza sativa transcription
factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
SUF4 (AtSUF4), and similar proteins; Region: SUF4-like;
cd20908"
/db_xref="CDD:411020"
misc_feature 1333..1395
/gene="LOC111066236"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:411020"
misc_feature 1333..1395
/gene="LOC111066236"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1348..1350,1366..1368,1390..1392,1399..1401,
1438..1440)
/gene="LOC111066236"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:411020"
misc_feature 1420..1485
/gene="LOC111066236"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:411020"
misc_feature 1420..1485
/gene="LOC111066236"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1507..1569
/gene="LOC111066236"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1597..1659
/gene="LOC111066236"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1678..1743
/gene="LOC111066236"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1693..1695,1699..1701,1705..1707,1711..1716,
1723..1728,1738..1740,1780..1782,1786..1788,1798..1803,
1810..1815,1822..1824,1864..1866,1870..1872,1876..1878,
1882..1887,1894..1899)
/gene="LOC111066236"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1765..1827
/gene="LOC111066236"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1849..1905
/gene="LOC111066236"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
1 taataatttg ctgagttgag ttataatatt agcaacaaaa aataaaaaat tagcgttgcc
61 gtaccacaat cactggctgc ccacccacaa ttatatccat ctctaatttc aaattacatc
121 gctaattatg ttgtttacag cagtagcagc agctaaaaag tgcacttaac tttttgtatt
181 ttcctagcaa agatgatttg cagattatgc ctgcgcagca taaatcccag caatgccgta
241 ttcctgttcg aaacgaacga gacgatggcg gagacgattc tggtcaagat gattgccaaa
301 ttcctgcaac tggagatcac gcccgacgac agcatctcga cgagcgtctg caccgaatgc
361 tgtgagcatc tggaggactt caacaccttc tggcagctgg tggaacagaa gcagggaact
421 ctcaaaaagg agtttctcac cgtcgacgtg gactgcgtgg cgatgaagtg gacgggcgag
481 gtggatgtgg acgtcaacat tgacgagctg ccgctggtgg cagtcgaaat ggacgagaag
541 cctctcgata tgcacaacct cagcatgctg ggcagtgttc tggatgtgaa tgtggacagt
601 gtggaggtgc cacaggcacc gccagtggat atcaaaattc agcagaccga ttacttgtcc
661 gaggaagacg aacatccgcc ccatctcgat gcgactgatg acagtgagtt cgagtgcgag
721 gcaggccccc aagaagacac ctcggatgat gagccgctgg tcaagctgca ggacaagctg
781 aagcccaagc gcaagtctca cgtccgcgcc accaagacac tggaagacag ctgctcactc
841 ggaggtcagg agctgaatta tctgcttgga cggggcgatg gcgatggtga aggcgagggc
901 agcaaagggc gtcgcaaaaa ggcgcccggc cagcggagcc tacccacgga ggtgcaggaa
961 agcgaactgc aggcagcgct cgaacgcaag cccaagggct gctcgcgggc ccagctggcc
1021 aagcggtacg aggaagtcat tgccagctac atgaacgccg actgcgacct gtgcgacttc
1081 agcgccaagt atctgtccga gctgaaggtg cactttctgg aggtccacca gcgcgagttc
1141 tacataaagt gctgcaacaa ggtcttcaca cgcgcctcca aactgatgga tcacatacgc
1201 aagcacgtta atccgaagct ctttacctgc tccatctgcc agaagacgct caattcgcag
1261 gactatctgg ccacccacat cgagacggtg cacaataagg tggagaaaat cgacaaggtg
1321 ctgcagtttc cctgctccaa gtgcgagcgc actttcagca gtgagcgacg actggccaat
1381 catctcgcca agcatgacac ggcgacgctg gagcacatct gccacatatg ccataaaaat
1441 tttgccaatg tccatcggct gcgccggcac atccagtcca tacacgagga tctgcaccgg
1501 catgtgtgcg acatctgcgg caagaagttc aaattcaagc cctcgttcga gcggcatctg
1561 cgcgagcacc agggcgtggt ggcaccggcc atgcagtgcc ccgtctgcgg tgtctggctg
1621 aagaacgagc acagtctgcg gctgcatcgc ttcacgcacg acagcaccaa cacggactgt
1681 ccccactgct cgaagacatg caactcgaga acggcgctgc gcgcccacat caagtatgcc
1741 cacaagctga cgaccagctt ccagtgcaca tactgcgaga agacctttaa gcagcagcgc
1801 aacctggacg agcatctggc catccacacg ggcctccagc tctacaactg tccgcactgc
1861 cccaaggagt gccgctcccg gtccaacatg tacgtgcaca tcaagcagcg gcatgcggag
1921 gagtggctca ccgccaagat ggcccgctcc cacaatccgc agttcaagcc gcacacctaa
1981 tgcccaagcc tagcttatat cttagcctag ttagtccact aaataatgca ctaaatacac
2041 gacacaaggt agtagtagca gtctataaga gatt