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LOCUS XM_017160750 2157 bp mRNA linear INV 09-DEC-2024 (schlank), transcript variant X1, mRNA. ACCESSION XM_017160750 VERSION XM_017160750.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160750.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2157 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2157 /gene="schlank" /note="ceramide synthase schlank; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108070328" CDS 542..1783 /gene="schlank" /codon_start=1 /product="ceramide synthase 6" /protein_id="XP_017016239.2" /db_xref="GeneID:108070328" /translation="MDLINKFSDAFWSTQIWLPPNTTWADIAPGSRQDVVHANYKDLI WPIPFAAVVMLVRYTLERFWISPIGKSLGIRSSRPKKAANVPILETAYAKSTRLDNKW LAPLSKQTDMSERQIERWWRLRRAQDKPSTLVKFCENTWRCIYYLYSFIFGVIVLWDK PWFWDVKSCWYGYPHQSISNDIWWYYMISMSFYWSLTGTQFFDVKRKDFWQMFIHHMV TLLLMSLSWVCNLHRVGSLVLVVHDCADIFLEAAKLTKYANYQKLCDAIFAIFTVVWI VTRLGFYPRIIYSSSVEAPRILPMFPAYYIFNSLLLMLLVLHVIWTYMILKIVVDSLQ KGLMSGDIRSSDSEDLTDSSENARLANGSARSKNKSNSGATSGGSAAGAGAGGATQRK SNNANNHTTEAAGGAATTAAK" misc_feature 764..934 /gene="schlank" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cd00086" /db_xref="CDD:238039" misc_feature order(764..775,779..781,830..832,848..850,887..889, 893..898,905..910,914..922,926..931) /gene="schlank" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(767..769,776..778,896..898,905..910,917..919) /gene="schlank" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 944..1543 /gene="schlank" /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC; smart00724" /db_xref="CDD:214789" polyA_site 2157 /gene="schlank" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tctaactccg ccggctctgg gcacactcgc atattaaaaa aattagtatt tttttttcgt 61 tcatcctgaa agtgctagtg gacgcccact cgatccccat tcccgaaatt ctgaagtgta 121 ttttggcccg gccccaggaa cggaacggaa cggtttctcc agtaaacaac acacaactta 181 aacactctcc ctttcgaggc ggcacgaata gcatagcaaa tacaacctgc atagagagac 241 acaacaacaa caattcaata ttcggcggtt tgttttttgc cagtgtgtgt gtgagtgtgt 301 tgtgcgagtg tgtgtatgag ccgcggcccg gtgctccggt tgttgttgtt gttgctgttc 361 caaggagcag aaagaacaca taaataaata taccaaaaat atacatacat atatatattt 421 atgtgacaag acaacaaacg ccagggaaaa actggaaagg aaaggaaagc cgagcgaaaa 481 caattgagaa attaaggcag cagcaggaaa aggcaaagga aacggaaaag gaaccggaaa 541 gatggatcta atcaataagt tcagcgatgc attctggagt acgcaaattt ggctgccgcc 601 gaacacgacc tgggcggaca tagcgcccgg ttcgcggcag gatgtggtgc acgccaacta 661 caaggacctc atctggccca ttccattcgc cgctgtcgtc atgctggtcc gctacacgct 721 ggagcgtttt tggatatcgc caataggcaa atccctgggc atacgtagtt ctagacccaa 781 gaaagcggca aatgttccta ttctggagac ggcctatgcc aaatcgacgc gattggacaa 841 caaatggctg gctccgctgt ccaagcagac ggacatgagc gagcgccaaa tcgagcgctg 901 gtggcgcctc cgaagggccc aggacaaacc gtcgacgctg gtcaagttct gtgagaacac 961 ctggcgctgc atctactacc tgtacagctt catctttggc gtgattgtgc tgtgggacaa 1021 gccctggttc tgggatgtga agagctgctg gtacggctac ccgcatcagt caatcagcaa 1081 cgacatctgg tggtactaca tgatttcgat gtccttctac tggtccctca ccggcaccca 1141 gttcttcgat gtgaaacgca aggacttctg gcagatgttc atccatcaca tggtcaccct 1201 gctgctgatg tcgctcagct gggtctgcaa tctgcatcgc gtcggctcgt tggtcctcgt 1261 tgtccacgat tgtgccgaca tcttcctgga ggccgccaag ctgaccaagt atgccaacta 1321 ccagaagctc tgcgacgcca tctttgccat cttcacggtg gtctggattg tgacgcgcct 1381 gggcttctat ccacgcatca tctacagctc atctgtggag gccccgcgca ttctgcccat 1441 gttcccagcc tactacatct tcaactcatt gcttctgatg ctgctcgtcc tgcacgtcat 1501 ctggacatat atgattctca agatcgttgt cgactctctg cagaagggtc tgatgtccgg 1561 tgacatacgt tccagtgata gtgaggatct cacagacagt tcggagaatg cacgtctggc 1621 caatggctcg gcgcgctcca agaacaagtc gaacagcggt gcgacgtcgg gaggatctgc 1681 agcaggagca ggagcaggtg gtgccaccca gcgcaagtcc aacaatgcca acaaccacac 1741 gaccgaggcg gcaggaggag ctgcgacaac ggcggccaag taggctggga tgcgggtgac 1801 tgggaacgga ggatggagga tggaggagga gcagccggtg gccaccagtg gctgagcaca 1861 gcaccagtac cacagtacca tcaccagtgg tagtgggcac attttccgag gggcaggagc 1921 aacaacaaca gcaaaacaaa caaaatcaac acacacacac acaccccaca ccaacaccaa 1981 cccaaacaca cacacaccca cacacacata aaaaaaacca aaccagttca gaacgttttt 2041 atgttaatta ttatttttta tatataaatc atttttttta agataaacaa aaaaagagca 2101 aaacgaaaac caaaagaaat ttcaataaat gcgagaaaat ttatgcgtaa cgatcca