Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017160586 1870 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017160586 VERSION XM_017160586.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160586.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1870 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1870 /gene="Cdc42" /note="Cell division cycle 42; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins" /db_xref="GeneID:108070204" CDS 168..743 /gene="Cdc42" /codon_start=1 /product="cdc42 homolog" /protein_id="XP_017016075.1" /db_xref="GeneID:108070204" /translation="MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT HHCQKTPFLLVGTQIDLRDETSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSAL TQKGLKNVFDEAILAALEPPEPTKKRKCKFL" misc_feature 174..698 /gene="Cdc42" /note="cell division cycle 42 (Cdc42) is a small GTPase of the Rho family; Region: Cdc42; cd01874" /db_xref="CDD:206664" misc_feature order(174..176,180..182,258..263,270..275,279..284, 288..290,294..296,321..323,333..350,357..368,375..380, 384..389,474..479) /gene="Cdc42" /note="GEF (guanine nucleotide exchange factor) interaction site [polypeptide binding]; other site" /db_xref="CDD:206664" misc_feature order(177..179,186..206,213..215,225..230,234..236, 249..251,255..311,321..326,336..356,366..371,375..377, 513..515,525..527,663..665,675..677,684..689,696..698) /gene="Cdc42" /note="ACK tyrosine kinase interaction site [active]" /db_xref="CDD:206664" misc_feature 195..218 /gene="Cdc42" /note="G1 box; other site" /db_xref="CDD:206664" misc_feature order(204..221,252..254,261..266,270..272,336..341, 345..347,513..515,519..521,642..647) /gene="Cdc42" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206664" misc_feature order(225..230,273..275,279..281,285..287,303..305, 366..368,375..377,684..689,696..698) /gene="Cdc42" /note="CRIB effector interaction site [active]" /db_xref="CDD:206664" misc_feature order(234..242,276..278,282..290,294..296,300..308, 357..359,663..665) /gene="Cdc42" /note="Par6 cell polarity protein interaction site [active]" /db_xref="CDD:206664" misc_feature 240..287 /gene="Cdc42" /note="Switch I region; other site" /db_xref="CDD:206664" misc_feature order(261..263,267..269,273..278,348..359,366..368, 375..377) /gene="Cdc42" /note="GAP (GTPase-activating protein) interaction site [polypeptide binding]; other site" /db_xref="CDD:206664" misc_feature order(270..275,342..344,357..359,363..368,372..377, 384..386,474..479,483..485) /gene="Cdc42" /note="GDI (guanine nucleotide dissociation inhibitor) interaction site [polypeptide binding]; other site" /db_xref="CDD:206664" misc_feature 270..272 /gene="Cdc42" /note="G2 box; other site" /db_xref="CDD:206664" misc_feature 336..347 /gene="Cdc42" /note="G3 box; other site" /db_xref="CDD:206664" misc_feature 342..398 /gene="Cdc42" /note="Switch II region; other site" /db_xref="CDD:206664" misc_feature 510..521 /gene="Cdc42" /note="G4 box; other site" /db_xref="CDD:206664" misc_feature 639..647 /gene="Cdc42" /note="G5 box; other site" /db_xref="CDD:206664" polyA_site 1870 /gene="Cdc42" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgcgctagtc actcgctggg gaaatagtag caacattttc atctggcagc actgcgtacg 61 aatacgaata cgaatacgaa tcgagtcgag cccagcccag aaaagcggaa aactcggaac 121 agactcgcca gcggttgaga atttcaataa attgagtcag cagcaacatg caaaccatca 181 agtgcgtggt cgtcggcgac ggagccgtgg gcaagacctg cctgctcatc tcgtacacaa 241 ccaacaagtt cccctcggaa tatgtgccca ctgtcttcga caactacgcg gtgaccgtga 301 tgatcggcgg ggagccctac acactgggcc tcttcgatac ggccggccag gaggactacg 361 atcgcctgcg tccgctttcc tatccgcaga cggacgtctt cctcgtctgc ttctcggtgg 421 tcagtcccag ttcgtttgag aacgtcaagg agaagtgggt gcccgagatc acgcaccatt 481 gccaaaagac acccttcctg ctggtgggca cacagatcga cttgcgcgac gagaccagca 541 cgctggagaa gctggccaag aacaagcaga agcccatcac catggagcag ggcgagaagc 601 tggccaagga gctgaaggcc gtcaagtatg tggagtgctc ggccctgacg cagaagggcc 661 tgaaaaatgt gttcgacgag gccatcttgg ccgctttgga gccgccagag cccacaaaga 721 agaggaagtg caaattctta taattctcct ccttccaaat cccaccccca aacccacatg 781 atgatgtatc cctttcattc tggctttcta ctatcgcaat gactccgcct cctccgcctc 841 cgcctcctcc tttcgtcttg tcgagaagcg ttcaatatat acccatatat atatacatat 901 acgcatgatg tatgctgttt tatgatttat gttccatgtt actctgaagt cccagttctc 961 cacaagctac tttccctctg tctttaccta tttctctatt gctatattgc tatattgcta 1021 tatcctaact cgggcacagt cttccgcccc tcagaacttc agccaacaat caaatcaaaa 1081 acaagctata tttcatttcc ggttcttggc gcaattttct tatgttttaa gcaaggagag 1141 gagaaaaaaa acacaatatc aatatagcga aaacaaatta tttatatata tttctttata 1201 aatatataca agaattaagg aggaaacaaa aagcaagaaa atataaattt atgataacaa 1261 aacaacaatc cagaacaaac aaaaagcgag agaaccatgc aattttttgt tttgcatcag 1321 tcgatcgatc cagatccaag tcggatattg gatacacaca tatagtcccg agagcaacgt 1381 gaagaatatg ccaggtcgcg aagattatat aaagtattta tgacaactga cgatggcgca 1441 atgttcaaac aacggaggta ggaaggaatt cgctgacatg caaatatgaa agtgaagctt 1501 attatgtaat aaaaataaga gtatgagtat tgaaatatga ttaaaagtaa attaaaacaa 1561 aggaagaaga taaacaagaa ccgaactagg cgttgcatcc acaaacacac atctgaaatc 1621 cacaatctat ataaatatat atatataaat ccataaagta taacaataaa accaacaagc 1681 ggcaacagca agaaaaattt gtattgtagt tcagcgtaaa caacaaagaa gagaaaatac 1741 gaactaatgc attttttact atttttatat gtatacatta tcaattttta catttttttt 1801 ctagacctta gtgatttaac attattgatt tcagataata tcttataata aaacgaaatc 1861 caaaacgaaa