Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017160500 5210 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017160500 VERSION XM_017160500.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160500.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5210 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5210 /gene="Met" /note="Methoprene-tolerant; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:108070145" CDS 686..2818 /gene="Met" /codon_start=1 /product="basic helix-loop-helix ARNT-like protein 1" /protein_id="XP_017015989.2" /db_xref="GeneID:108070145" /translation="MAAAETGNTSSTGSGSGSGSGSGSGSSTDPANGREARNLAEKQR RDKLNASIQELATMVPHAAESSRRLDKTAVLRFATHGLRLQYVFGKSASRRRRRPSCL KGASSGLSSAAAAAGDLANPSLHLTDTLMQLLDSCFLTLTCSGQIVLVSSSVEQLLGH CQSDLYGQNLLQITHPEDQALLRQQLIPRDIETLFYQQQHQQQQQQHSTSTSASASGS DLDEEEMETEEQHLEEQEQDDNPYDRRPPSPRSIAHLAAIDERLRADRRCFTVRLARA STRAEATRHYERVKIDGCFRRSDSSLTGGAAANYPIVSQLIRRSRNNNMLAAAAAVAA EAATTSVPPQHDAIAQAALHGISGNDIVLVAMARVLREERPPEEAEGALGGLTIYRQP EPYQLEYHTRHLIDGSIIDCDQRIGLVAGYMKDEVRNLSPFCFMHLDDVRWVIVALRQ MYDCNSDYGESCYRLLSRNGRFIYLHTKGFLEIDRGSNKVHSFLCVNTLLDEQAGRQK VQEMKEKFSTIIKAEMPAQSSSPDLPASQAPQQLERIVLYLIENLQKSVDSGESAVGG QPMESLMDDGYSSPANTLTLEELAPSPTPTLALVPPAPSSVKSSISKSVSVVNVTAAR KFQQDREQAKERQHSSSQGVIRQLSSCLSEMETASCTLSPASSLSAGEAPDTPDPHSN TPPPPPQQPQPLHARPSVLHRTLTSTLR" misc_feature 785..940 /gene="Met" /note="basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain family; Region: bHLH_PAS; cd11391" /db_xref="CDD:381397" misc_feature order(785..787,794..799,806..811,815..820,830..832, 893..898) /gene="Met" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:381397" misc_feature order(815..817,824..829,836..841,845..850,857..865, 893..901,908..913,920..922,929..934,938..940) /gene="Met" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:381397" misc_feature 1097..>1246 /gene="Met" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:238075" misc_feature 1871..2200 /gene="Met" /note="PAS domain; Region: PAS_11; pfam14598" /db_xref="CDD:464214" polyA_site 5210 /gene="Met" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcacgacggg ccgttacatc gatgtatcga tagtttttag cctggccaac cgagccaatg 61 tttattgtta taaaataaat gttaaaaata aacaattaat cacttaatat aaacaaaaac 121 cagtgcaggc attgtaaaaa cgccccccgc ccccgaaact gacctcatcg caggcaaaca 181 acaaataaat agagcaacaa caacgccaac ggcagcagca gcagcaacaa caacaagcag 241 gagattcaga ttcgcaacgc aatcaaaaaa gaaaaaacgg aaaaaaagct acaaggcgaa 301 acgcataaat aaatagggaa acaaataata gtaataataa taataagact aaagccaagt 361 ggaaaagtac gaaagcgaaa agagaaaaca tatgtacgtt gcgtgagagt gacgtgtgag 421 tgtgtgtgtg cgggcgagcg agagagaacg accaaggaga ggggcgagag gagaggcgag 481 caaaaacaaa aacaacagca cagcataagc gagaccttga aaactttaaa agcagcagca 541 aaaacaacaa aataaaataa aagaggagag tagcggacac ggataccctg ttatggagag 601 tgacgatttt catttaccgc aaggcgccaa ttaaagggga aaatccatag agaaaaaccg 661 agaaacgagc gaggaaaatc ggaaaatggc agcagccgaa acgggcaaca caagctccac 721 gggatcggga tctggttccg gatctggatc tggatccgga tcctctacag atcccgccaa 781 cggcagggag gcccgcaatc ttgccgagaa acagcggcgg gataagctga atgccagcat 841 ccaggagctg gccaccatgg tgccgcatgc ggcggagtca tcgcgccgcc tggacaagac 901 cgccgtcctc cggttcgcca ctcatggcct gcgactccag tatgtctttg gcaagtcggc 961 ctcccgacgc cgccggagac ccagctgcct caagggtgcc agttccggtc tctcctccgc 1021 cgccgccgcc gccggagatc tggccaatcc cagcctgcac ctcacggaca ccctgatgca 1081 gctgctggac agctgcttcc tcaccctcac ctgcagcggc caaatcgtct tggtctcctc 1141 cagcgtggag cagctgctgg gccactgcca gtccgatttg tatggccaga atctgctgca 1201 gatcacccat cccgaggatc aggccctgct gcgccagcag ctgataccca gggacatcga 1261 gacgctcttc taccagcagc agcaccagca gcagcagcag cagcactcca cctccacttc 1321 ggcctccgcc tcgggaagtg acctggatga ggaggaaatg gagacggagg agcagcatct 1381 ggaggagcag gagcaggacg acaacccgta tgatagacgc ccgcccagtc cgcgcagcat 1441 tgcccacttg gcggccatcg acgagcggct gcgcgccgat cgccgttgct tcaccgtccg 1501 cctggccagg gcatccacgc gggcggaggc cacgcgccac tacgagcgcg tgaagatcga 1561 tggctgcttc cggcgcagcg actcctcgct caccggcgga gcggcggcca actatcccat 1621 tgtctcgcag ctgatacgcc gctcgagaaa caacaatatg ctggccgcgg cggcggcggt 1681 ggcagcggag gcggcgacaa cgtcggtgcc gccccagcac gatgccatcg cccaggcggc 1741 gctgcacggg atcagtggca atgacattgt cctggtggcc atggcccgcg tgctgcgaga 1801 ggagcggccg cccgaggagg cggagggagc gctggggggc ctaaccatct acaggcagcc 1861 ggagccctat cagctggagt atcacacgcg gcacctaatc gacggcagca tcatcgactg 1921 tgatcagaga atcggtctgg tggcgggcta catgaaggat gaggtgcgca acctcagccc 1981 cttctgcttc atgcacctgg acgacgtgcg ctgggttatc gtggccctgc ggcagatgta 2041 cgactgcaac agcgactacg gcgagagctg ctaccgcctg ctgtcgcgga acgggcgctt 2101 catctacctg cacaccaagg gctttctgga aatcgatcgc ggcagcaaca aggtgcactc 2161 ctttctgtgc gtcaacacgc tgctcgacga gcaggccggg cggcagaagg tgcaggagat 2221 gaaggagaag ttctcgacca tcatcaaggc cgagatgccc gcgcagagca gcagtcccga 2281 tttgcccgcc tcccaggcgc cgcagcagct ggagaggatt gtcctctatc taattgagaa 2341 cctgcagaag agcgtggact cgggggagtc ggcggttggc gggcagccga tggaaagcct 2401 aatggacgat ggctacagct cgccggcgaa tacgttgacc ctcgaggagc tggccccgtc 2461 gcccacgccc accttggctt tggtgccgcc ggctccgtcg tcggtgaaga gctccatctc 2521 caagtcggtg agtgtggtga atgtgacggc ggccaggaag tttcagcagg atcgggagca 2581 ggcgaaggag cggcagcaca gctcctcgca gggagtgatc cgccagctga gcagctgcct 2641 cagcgagatg gagaccgcat cctgcactct gtcgccggcc agcagcctga gtgccggcga 2701 ggcgcccgat acgcccgatc cgcacagcaa tacgccgcct ccgccgccac agcagccaca 2761 gccgctccat gcgcgtccca gtgtcctgca tcgtaccctc accagcacgc tgcgatgacg 2821 ggccgatggc tcctggtttg ccttctaatt gggtgtggaa atggacgcca ctagtagcgc 2881 acatcaagtc caagccaagt gaaagcccaa aatgtatcag atactttcaa ggattagcaa 2941 agaaaaccag tggtttttaa agactccttt tagaagagga acatgttttt aacaattgga 3001 aattttattt catttcaaaa catttataaa aacagaattt tgtaattttc aagggacttt 3061 ccattaattc aggtttcttt taaacgtgat ctaaatgcct tctttatcat aaccaagcaa 3121 aactattagg tttcccaaat atttatcttt ttagtgactc cttttagaag aagaacaatt 3181 gaaaatttta tttcatttca aaacacttat gaaaacagaa ttttgtaatt ttcaagggac 3241 tctccattaa ttctggtttc aactaaattc tttccttgtc ataaccaatc aaaactatta 3301 ggtttcccat atatattaac atatcccaac atggtttcat tatagtttta aaaacaccca 3361 tgcttatgtg aacaaaaagc gaactgaggg cgcatttatt ttgagattat ggcagttata 3421 ataatccgat cacgataatc gttacagaaa agaaagggaa agatacattt tgggtgtagt 3481 ggctgaattt acaagtgatg tcgatccgaa gtataggcta tatatattga acgccgatcg 3541 gtgtgcgctg ctaaatgcgt tccataatca ataatcttcg ttatgtaatt acgtttaatt 3601 tgtaaatatt tcgtatgtgt gtgtgtgttt gagcacgagt gcgtctgtgt gcatgggtgt 3661 gtatgagaaa tagatccgtg ctctcagctt tggttttagt tgaaatttag gccccatttc 3721 ccgatttccc agtggtccga tctccgccca gccccccgca caccagtgta aaaagagtac 3781 aaaaaaaaaa acaaaaacaa aaaacaaaca attatatatt tattttgccc taagtctaga 3841 acacgctaaa aacgactcat taatagttaa acggattttg caatcgatgg aaattaaacg 3901 ctcgattttt gttttgccat ctcactcacc acaaacagtc aaacttctct aaatcgaact 3961 ttaaatctac aacttcttaa tatttttttt tagttaatca aactatagtg aaaaaattac 4021 taatatttta ggcgtatttt taggaaaacc atttttaaca aacttaaaaa cgtatccact 4081 ataaattcca aaaattccaa caccaattat aaaagctata atacagaatc ctttggtaat 4141 ttaaaagcta gggatgccaa atctcgaaaa aaaacttatt ttaaaagtat ttagccaatt 4201 atatacccaa taatttcgaa atttagttaa cattttcaaa gaattcactg taaacgaata 4261 ataaccaatt gtgttcagaa aacgattata aaataatttt ttagatttaa caaaataact 4321 ttagaaaaat tttttataat cgagacggca cttatacaat tttaaatgat ttaagcacat 4381 tatttcgaaa caagtggagt aaaatatttc ccgacattaa atattcaaat gatattcgtt 4441 tttctaagaa aaaaaatttt ttttttatta gagaagaggc gatccagttc gtcctagcga 4501 agtttgactg tacttagttc aatactcaca gttgttatca aagcctttgc catcgtcctt 4561 ggcgttgcgg tcttatcacc ggcgtatcgg agggaatata tgattttttt tcggggaagt 4621 ggttcgttct agtggtaatt atggggcggt gggtggttta ggggacgagt ggaggggcgg 4681 ggcggggcgg acgttggtgg gcgaaaggag gggggctaac gtttcgttat tttttgtttc 4741 atagcgaaat tctgctagct ataatcttat gcatatatat tattaacttt tcgtttagct 4801 caattttttg tttgtatttt taattattac tcggtttgtc tagtgtgtaa tttaattaaa 4861 agtctaatgc taatttccca gcgaatcgtt cagtgtttgt tcaaacgagt tgtgctcttt 4921 aaacactttt ggtttatccc ttcatttaat ttttgtttgt ctaccttgcg ttgttatttg 4981 cccaaaaaaa aaacaaaaca aattaatgtt tttttttagt aatttagctt taagtgtaat 5041 gtcaaatgtc aagcggtata atctacgtaa gaataataat gtgtaatgtc ttttttagaa 5101 cttgctaaac tctagcaatt aaaaaatagc acgtaattaa caataattaa ttataataat 5161 cagtgacagt tcatgcagat gaaacgttaa taaataataa attataaaaa