Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017159710 6570 bp mRNA linear INV 09-DEC-2024 transcript variant X4, mRNA. ACCESSION XM_017159710 VERSION XM_017159710.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017159710.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6570 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6570 /gene="HDAC4" /note="histone deacetylase 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108069580" CDS 725..4411 /gene="HDAC4" /codon_start=1 /product="histone deacetylase 4 isoform X4" /protein_id="XP_017015199.2" /db_xref="GeneID:108069580" /translation="MSSPDDRIPIHDLPSEAGSDERLLHITPGTLTLDFKPHPAVDID QQIMELKKSQELQKQRLFHTFQEQSKQMELEHKLQLEHKYQFAVNSHGAFQELRTESM VTAAAAAAAVAEEQHRQQQQQQHQHQQHQQHQQQQQQHQQQQQHQQQQQQQQGRGRDG MKLNKTCSANASPEVKQILNCFIMSRKSQAAQSNGTTTSPYRNRGVVKSSSGESLPAG TVTSAHPYKIPQPPSSLLKYESDFPLRKTDCNSTPDSGPNSPPSAAALSVGVVGSRGS PTSAPIQEENEEGSQYQPGQRSSINDLPLFSSPSLPNISLGRPHLPNSAHSQHAQVAA QAQAQVAAQAAQAAQAQAHAMFAALHQHVAAAGGQPGGYYNPLSMAAFVGRQPAPMSM IPATGIAPQQPSPVVRSASATSTSSSQASLVGDVAPPQAHAASTILPSSSSYMQQMGS GVNIHAISAVAAAAAAAAAAAGSLPPTNSHGAQHGHSNHHGLAHGHGPHALYGGHGHQ HNVPITDAQVAQVHLHKQGHRPLGRTQSAPLPLGHPMLTGAAQLNVVQTHYENSEAER QAYEHQVLNQKLRQTVLTRSGAAAAAAAAAGVGVSVGVVREAQLKEEDDDSAAEVMDL TDKKKPPKTVLTSTIATSTSQNLPEALAAAVAAAAYRGAPPSTSSSAAAATTAANKIA GGGIKLRDQEYLQQQREQLLLLQQEEELAKGLMRPLSRTLSSPLVPLGPHGLSQIPDT GQQPAPIATSSSADHIPPVNLSLPHRQHRQLMSTLYASQLRNHQQLHQPPSSGSPPHK VTTGLAYDPLMLKHSCICGDNAQHPEHSGRLQSVWARLNETDLVKRCDRLRARKATQE ELQTVHTEAHAMLFGSNQCQLSRPKLENTLSASFVRLSCGGLGVDLDTTWNEHHTATA ARMAAGCVIDLALKTAKGDLRNGFAVVRPPGHHAEANLAMGFCFFNSIAIAAKLLRQR MPEVRRILIVDWDVHHGNGTQQAFYQSPDILYLSIHRHDDGNFFPGTGGPTECGSGAG LGFNVNISWSGALNPPLGDAEYIAAFRTVVMPIARSFNPDIVLVSSGFDAATGHPAPL GGYHVSPACFGFMTRELLQLANGKVVLALEGGYDLAAICDSAQECVRALLGDPAAPIA QAELERPPCQNAINTLQKTIAIQQTHWPCVRMLEHTVGLSALETLKVEHDESETINAM AGLSMHRTLSRDDSEEPMDQDETK" misc_feature 851..>1015 /gene="HDAC4" /note="Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9); Region: ClassIIa_HDAC_Gln-rich-N; cl25407" /db_xref="CDD:421006" misc_feature order(863..865,875..877,887..889,896..898,908..910, 917..919,929..934,941..946,953..955,965..967) /gene="HDAC4" /note="dimer interface A, D [polypeptide binding]; other site" /db_xref="CDD:188886" misc_feature <2162..>2254 /gene="HDAC4" /note="CDF family Co(II)/Ni(II) efflux transporter DmeF; Region: CDF_efflux_DmeF; NF033827" /db_xref="CDD:468196" misc_feature 3119..4243 /gene="HDAC4" /note="Histone deacetylases, class IIa; Region: HDAC_classIIa; cd11681" /db_xref="CDD:212544" misc_feature order(3560..3565,3587..3592,3677..3679,3683..3685, 3959..3961,4079..4081) /gene="HDAC4" /note="active site" /db_xref="CDD:212544" polyA_site 6570 /gene="HDAC4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cctggccaca ccaatatttg tctttatttt aataaaataa tcaaataatc gtcgcttcgg 61 attcggaaca tagaaatttg tatttttcgc ttccagccag tccaaccgca gatcgcgcgt 121 ttttccccca ctaaaaaaaa acccgaaaat tcgaaaagaa tattttcttg tttttttttc 181 tgtttttcca cggcgaatat tcaatttttt tgtaaaatat caaaacaaca acaacaaaaa 241 gtgcgtgcgc gtgcagaaac gacgaaagaa aaaaaacgta caaattgtgg gcgaatcaac 301 aagcaaaaga gaatgagcga tgatgaggag aagaggcaaa agcagaaaaa gaaactgcga 361 aaactgcttg tgaagtgaca aaaataacaa aagcaacaac aagtaacgaa agagaaaagc 421 aaaaaggcga aaaaagagcg caaaaaatac gtctacaaaa acggcagcag cagcaacaac 481 acaaaaatta acttaaaaaa gtcgtgaatt caacgtatac atatatatac agcaaacaca 541 cacacacacg cgcgccgagt gagagagcgt gcgttattta tatttatttt atattttcgt 601 taatcatttt tcgcattttg tggaacaagt tggaaaagcg acaatacaaa ctacaacaaa 661 agcagcagca agcagtttgc accacttgga agaggttccg ccctccccca attccatatg 721 caaaatgtct agtcccgacg atagaatacc aatacacgat ctgccatcag aagccggaag 781 cgatgagcga ttgctgcaca taacgccggg cactctgaca ttggacttca agccccatcc 841 agcggtggat atcgatcagc agatcatgga gctcaagaag agccaggaat tgcagaagca 901 gcggcttttc cacacgtttc aggagcaatc gaagcaaatg gaattggagc ataaactcca 961 actggagcac aagtatcaat ttgcggtgaa ttcacatggc gctttccagg aattgcgaac 1021 cgagagcatg gtgacagccg ccgccgcagc agcagcggtg gctgaggagc agcatcgcca 1081 gcagcagcag cagcaacatc agcatcagca gcaccagcaa catcagcagc agcaacagca 1141 acatcaacag cagcagcaac accaacagca gcaacagcag cagcagggac gcggcaggga 1201 cggcatgaaa ctcaacaaga cctgtagcgc caatgccagt cccgaggtca aacagattct 1261 gaactgcttc atcatgagca gaaagtcgca ggcggcgcag tcaaatggca cgacaacgtc 1321 gccctacagg aatcgcggcg tggtgaagag ctcctcgggc gaatccctcc cagctggaac 1381 cgtgaccagt gcgcatccgt acaaaatacc tcagccgccc tcctcactgc tcaaatatga 1441 atctgatttt ccgctgagga agacagactg caacagtaca ccggactcgg gacccaattc 1501 cccgccctcg gcggccgccc tgtcggtggg cgtggtcggt agccgcggat cgccgaccag 1561 tgcgcccatc caggaggaga acgaggaggg cagccagtac cagccgggcc agcggagcag 1621 catcaacgat ttgccgctgt tcagctcgcc atcgctgccg aatatttcgc tggggcgacc 1681 gcatttaccc aactcggcgc attcacaaca cgcccaggtg gctgcccagg cgcaggccca 1741 ggtggccgcc caggctgctc aggcggccca ggctcaggcc catgccatgt tcgccgcact 1801 gcatcagcat gtggccgccg ccggtggcca accgggtggc tactacaatc cgctgagcat 1861 ggcggccttt gtgggccgtc agccggcacc gatgtccatg atcccggcca ccgggattgc 1921 gccccagcag ccgtcgccgg tggtgcgcag tgcgtcggcc acctcgacct cctcgtcgca 1981 ggcctcgctg gtgggcgatg tggcgccacc gcaggcccat gccgcctcca ccattctgcc 2041 ctcgtcctcg tcctacatgc agcaaatggg ttcgggcgtc aatatccatg ccatctccgc 2101 cgtggcagca gcggcggcag cagcagccgc agccgccgga tcgctaccgc cgaccaatag 2161 ccatggtgca cagcatgggc acagcaatca tcatggtctg gcccatggcc acgggccgca 2221 cgctctgtac ggaggccatg gtcaccagca caatgtgccc atcacggatg cccaggtggc 2281 gcaggtgcat ctgcacaagc agggccaccg gccgctggga cggacgcagt cggctcccct 2341 gcccctgggc catccgatgc tcacgggcgc cgcccagctg aatgtggtcc agacgcacta 2401 cgagaacagc gaggcggagc ggcaggccta cgagcaccag gtgctgaacc agaagctccg 2461 ccagaccgtc ctcacccgca gcggagcagc cgccgccgcc gccgcagccg ctggcgtggg 2521 tgtgagtgtg ggtgtggtcc gcgaggcgca gctgaaggag gaggacgacg actccgcggc 2581 cgaggtgatg gacctcaccg acaagaagaa gccgccgaag acggtgctga ccagcacgat 2641 agccaccagc acgtcgcaga atctgcccga agccttggcc gcggcggtgg cagcggccgc 2701 ctaccgcggt gccccgccct ccacgtccag cagcgcggcg gcggcgacga cggcagccaa 2761 caagatagcc ggcggcggca tcaagttgcg cgatcaggag tatctgcagc agcagcggga 2821 gcagctgttg ctcctccagc aggaggagga gctggccaag ggcctgatgc gaccgctttc 2881 gcgaacgctc agcagtccgc tggtgccgct ggggccgcac ggtctcagcc agattccgga 2941 caccgggcag cagccggcgc cgatagccac ctcatcgtcg gccgatcata taccgcccgt 3001 gaacctctcg ctgccgcatc gccagcaccg ccagctgatg agcaccctgt atgccagcca 3061 gttgcgcaat caccagcagc ttcatcagcc tccttctagt ggctcgcctc cccacaaggt 3121 caccaccggc ctggcctacg atccgctgat gctgaagcac tcgtgcattt gcggcgacaa 3181 tgcccagcat ccggagcaca gcggtcggct gcagagcgtc tgggcgcgcc tgaatgagac 3241 cgatctggtg aagcgctgcg atcgactgcg cgcccgcaag gcgacgcagg aggagctgca 3301 gacggtgcac acggaggcgc atgcgatgct cttcgggtcc aatcagtgcc agttgagcag 3361 gcccaagctg gaaaacacac tctcggcgag ctttgtgcgc ctctcgtgcg gcggattggg 3421 tgtggatctg gataccacgt ggaatgaaca ccatacggcc accgctgccc gcatggccgc 3481 aggatgtgtg atcgatttgg ctctcaaaac ggccaagggg gatctgcgga acggcttcgc 3541 cgtcgtccgg ccgccgggac atcatgccga ggccaatctg gccatgggct tttgtttctt 3601 caactcgatc gccattgcgg ccaagctgct gcgccagcgg atgcccgagg tgcggcgcat 3661 cctcatcgtc gattgggatg tgcatcatgg caatggcaca cagcaagcat tctaccaaag 3721 tcccgacatt ctatatcttt ccatacatcg acacgatgac ggtaacttct ttcccggcac 3781 aggcggaccc acagagtgcg gctccggtgc cggtctcggc ttcaacgtga acatctcatg 3841 gtccggggca ctcaatccgc cgctgggcga cgccgagtat atcgctgcat tccgtaccgt 3901 tgtgatgccc atcgcgcgga gcttcaatcc ggacattgtg ctggtctcct cgggctttga 3961 tgcggccacc ggtcatccgg caccgctggg cggctaccat gtctcgcccg cgtgcttcgg 4021 cttcatgacc cgcgaactcc tccagctggc caacggcaag gtggtgctgg ccctcgaggg 4081 cggctacgat ctggccgcca tctgtgattc cgcccaggag tgcgtgcgtg cgctgctcgg 4141 cgatccggcc gctccgatag cccaggccga gctggagcga ccgccctgcc agaatgcgat 4201 caatacgctg cagaagacga tagccattca gcaaacgcat tggccctgcg tcaggatgct 4261 ggagcacacg gtgggtctgt ccgcgctgga aacgctcaag gtggagcacg acgagtccga 4321 gacgatcaat gccatggccg gcctttccat gcacagaact ctatcccgcg atgattccga 4381 ggagccgatg gatcaggatg aaaccaaata ggcggcgatg ctggctagga tttgtgggcg 4441 tggcacgcgg gaatggcgag agggcgtggc cgcaagctgc tcaatgcaca tttagttatt 4501 tgttgtagtt gaattgattg ttgttgctgt tgttgttgtg gcgctcgctt gcaattgttg 4561 tcgttgtcat tgatcgtcta tagccacatc tatctctctc tcgatcgatc gttaatatta 4621 taatcccctc caaaactgag aaacatcgaa aatagagcgg ggaaagtgtc taaaagaagc 4681 agaacagggc ctaaagttca aaatggtggc tgtgcctcca aaaaaagaaa taattataat 4741 aattagaaag aagaatcctt agagaaactg gggtgttttt ttatgcaaat atataagtag 4801 aatatattgt gagaatttag ttgtagaatt ccttgggagg atcttttttt tttgtttttt 4861 ttctaggtga gagaagaggt gttttaacgc acacaaacca acaaacacac gcaactcaat 4921 gtatcttatt attattatta atattattta agtatgtgtg ttgaaaggat atagaagcac 4981 taacctaatg gtaaatcagt aaactataaa gttaaagtta aaaggagatc aggtgcgaga 5041 agcgcgtgtt tttattttag gtaaggttca acctcagagt tcccgaaata catttaagcc 5101 ccaccaccac cacgcccact tatcccgcca gcccccaaaa acgaagatcg agcgagagag 5161 aggatttcgt gttatgtaga atgctttagt tgatataata agaggatatg agaaaactta 5221 acagctaaca agttgaggga aaggcgaaaa actgagaaat ctttttgtac aatttatagt 5281 ttagtgcaag tttcaagtac aacatactat tatttaaaga attctatata tatttaaata 5341 tatattgtgc aataaatgtg agaaaatgaa aatcgagtgc agagcaaaaa caaaacaaaa 5401 caaaagaaaa ccacacaaaa acagaaacag aaactaaaac gaataagaga gaattgttgt 5461 taaatgttgc cgagatctta tatacgtatg tatacctaat aactgttaca ataataaccc 5521 tttatatata taaaaaacaa atgaagtata tatatattta aatgcacatg tgtattcacc 5581 gtgtgtgtaa cgataacgat gttcaacaaa tgtctgaaat gaagtaaaac tattattata 5641 tgtaaataaa acacaaaaca aagtgaacaa ttttaataaa aaaaaaccaa atccgaaaac 5701 attcacgctc acacacacac acacacttac gtcctgggca ggacccgaag gcgtgaatcg 5761 ggaaaattct ggaatacccg tttaaccgct aaccgttaac tgtaaaaccg ctgtaattgt 5821 attcgtactc gtgtaccttt agctgtctat agccgtctct ctctaactcg ctacctaaca 5881 gtaaaggagc aactcaaaaa acggaagaag gagcaacaga caaggatcaa aagaattagc 5941 aggagaagag aaacaaggag gagaataagc acaacgagaa atggaccgat tggctccaac 6001 tggatgaaac aattgttaac aaatcgaaac agaaactaaa aactgaactt aaaaaattaa 6061 atcgcaaatg taactattaa tctaagcgaa ggagaagccg ttgtcagttt tttttgggtt 6121 tttattttta aacgcagaga aaacgcaaca taaaaatcta aaaattttag aagattttct 6181 gcgtttaatc tctgattttt ccttggtttt atttccggtt ctcccatttt aaattccgaa 6241 ccccgccatc ccatttacct ctcctgctaa ttgagcgttt ttgaaaaacc ttttgagctg 6301 ataaaaagaa acattaaaac ttaaattatt ctaactaaat aaaatattgt tgttgcgcac 6361 tgcaaaaaaa aaactaaaaa caaaaataat tccataagct gagaaatagt taaaagtggt 6421 ttttagcaaa aggaaaacca aatcaaatat ttatattttg tttattgttg cacaaataag 6481 tccaaggaac agaaaccatg aaacaattaa gagtaatatt gtgtgtcgct ttttctaaac 6541 gaaataaatc gaagaaatcg tcaagagtaa