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LOCUS XM_017159709 6654 bp mRNA linear INV 09-DEC-2024 transcript variant X3, mRNA. ACCESSION XM_017159709 VERSION XM_017159709.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017159709.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6654 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6654 /gene="HDAC4" /note="histone deacetylase 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108069580" CDS 803..4495 /gene="HDAC4" /codon_start=1 /product="histone deacetylase 4 isoform X3" /protein_id="XP_017015198.2" /db_xref="GeneID:108069580" /translation="MELKKSQELQKQRLFHTFQEQSKQMELEHKLQLEHKYQFAVNSH GAFQELRTESMVTAAAAAAAVAEEQHRQQQQQQHQHQQHQQHQQQQQQHQQQQQHQQQ QQQQQGRGRDGMKLNKTCSANASPEVKQILNCFIMSRKSQAAQSNGTTTSPYRNRGVV KSSSGESLPAGTVTSAHPYKIPQPPSSLLKYESDFPLRKTASEPNLLKIRLKQSVIER KARIGGPVGARRHERLLQAAQRRQQKNSVLTNCNSTPDSGPNSPPSAAALSVGVVGSR GSPTSAPIQEENEEGSQYQPGQRSSINDLPLFSSPSLPNISLGRPHLPNSAHSQHAQV AAQAQAQVAAQAAQAAQAQAHAMFAALHQHVAAAGGQPGGYYNPLSMAAFVGRQPAPM SMIPATGIAPQQPSPVVRSASATSTSSSQASLVGDVAPPQAHAASTILPSSSSYMQQM GSGVNIHAISAVAAAAAAAAAAAGSLPPTNSHGAQHGHSNHHGLAHGHGPHALYGGHG HQHNVPITDAQVAQVHLHKQGHRPLGRTQSAPLPLGHPMLTGAAQLNVVQTHYENSEA ERQAYEHQVLNQKLRQTVLTRSGAAAAAAAAAGVGVSVGVVREAQLKEEDDDSAAEVM DLTDKKKPPKTVLTSTIATSTSQNLPEALAAAVAAAAYRGAPPSTSSSAAAATTAANK IAGGGIKLRDQEYLQQQREQLLLLQQEEELAKGLMRPLSRTLSSPLVPLGPHGLSQIP DTGQQPAPIATSSSADHIPPVNLSLPHRQHRQLMSTLYASQLRNHQQLHQPPSSGSPP HKVTTGLAYDPLMLKHSCICGDNAQHPEHSGRLQSVWARLNETDLVKRCDRLRARKAT QEELQTVHTEAHAMLFGSNQCQLSRPKLENTLSASFVRLSCGGLGVDLDTTWNEHHTA TAARMAAGCVIDLALKTAKGDLRNGFAVVRPPGHHAEANLAMGFCFFNSIAIAAKLLR QRMPEVRRILIVDWDVHHGNGTQQAFYQSPDILYLSIHRHDDGNFFPGTGGPTECGSG AGLGFNVNISWSGALNPPLGDAEYIAAFRTVVMPIARSFNPDIVLVSSGFDAATGHPA PLGGYHVSPACFGFMTRELLQLANGKVVLALEGGYDLAAICDSAQECVRALLGDPAAP IAQAELERPPCQNAINTLQKTIAIQQTHWPCVRMLEHTVGLSALETLKVEHDESETIN AMAGLSMHRTLSRDDSEEPMDQDETK" misc_feature 809..>952 /gene="HDAC4" /note="Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9); Region: ClassIIa_HDAC_Gln-rich-N; cl25407" /db_xref="CDD:421006" misc_feature order(812..814,824..826,833..835,845..847,854..856, 866..871,878..883,890..892,902..904) /gene="HDAC4" /note="dimer interface A, D [polypeptide binding]; other site" /db_xref="CDD:188886" misc_feature <2246..>2338 /gene="HDAC4" /note="CDF family Co(II)/Ni(II) efflux transporter DmeF; Region: CDF_efflux_DmeF; NF033827" /db_xref="CDD:468196" misc_feature 3203..4327 /gene="HDAC4" /note="Histone deacetylases, class IIa; Region: HDAC_classIIa; cd11681" /db_xref="CDD:212544" misc_feature order(3644..3649,3671..3676,3761..3763,3767..3769, 4043..4045,4163..4165) /gene="HDAC4" /note="active site" /db_xref="CDD:212544" polyA_site 6654 /gene="HDAC4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcctggccac accaatattt gtctttattt taataaaata atcaaataat cgtcgcttcg 61 gattcggaac atagaaattt gtatttttcg cttccagcca gtccaaccgc agatcgcgcg 121 tttttccccc actaaaaaaa aacccgaaaa ttcgaaaaga atattttctt gttttttttt 181 ctgtttttcc acggcgaata ttcaattttt ttgtaaaata tcaaaacaac aacaacaaaa 241 agtgcgtgcg cgtgcagaaa cgacgaaaga aaaaaaacgt acaaattgtg ggcgaatcaa 301 caagcaaaag agaatgagcg atgatgagga gaagaggcaa aagcagaaaa agaaactgcg 361 aaaactgctt gtgaagtgac aaaaataaca aaagcaacaa caagtaacga aagagaaaag 421 caaaaaggcg aaaaaagagc gcaaaaaata cgtctacaaa aacggcagca gcagcaacaa 481 cacaaaaatt aacttaaaaa agtcgtgaat tcaacgtata catatatata cagcaaacac 541 acacacacac gcgcgccgag tgagagagcg tgcgttattt atatttattt tatattttcg 601 ttaatcattt ttcgcatttt gtggaacaag ttggaaaagc gacaatacaa actacaacaa 661 aagcagcagc aagcagtttg caccacttgg aagagatctg ccatcagaag ccggaagcga 721 tgagcgattg ctgcacataa cgccgggcac tctgacattg gacttcaagc cccatccagc 781 ggtggatatc gatcagcaga tcatggagct caagaagagc caggaattgc agaagcagcg 841 gcttttccac acgtttcagg agcaatcgaa gcaaatggaa ttggagcata aactccaact 901 ggagcacaag tatcaatttg cggtgaattc acatggcgct ttccaggaat tgcgaaccga 961 gagcatggtg acagccgccg ccgcagcagc agcggtggct gaggagcagc atcgccagca 1021 gcagcagcag caacatcagc atcagcagca ccagcaacat cagcagcagc aacagcaaca 1081 tcaacagcag cagcaacacc aacagcagca acagcagcag cagggacgcg gcagggacgg 1141 catgaaactc aacaagacct gtagcgccaa tgccagtccc gaggtcaaac agattctgaa 1201 ctgcttcatc atgagcagaa agtcgcaggc ggcgcagtca aatggcacga caacgtcgcc 1261 ctacaggaat cgcggcgtgg tgaagagctc ctcgggcgaa tccctcccag ctggaaccgt 1321 gaccagtgcg catccgtaca aaatacctca gccgccctcc tcactgctca aatatgaatc 1381 tgattttccg ctgaggaaga cagcatccga accgaacctg ctgaagatcc ggctgaagca 1441 gagcgtcatc gagcgcaagg cccgaatcgg tggaccggtg ggagcccggc gccacgaacg 1501 cctcctccag gcggcgcagc gcaggcagca aaagaactcc gttctcacaa actgcaacag 1561 tacaccggac tcgggaccca attccccgcc ctcggcggcc gccctgtcgg tgggcgtggt 1621 cggtagccgc ggatcgccga ccagtgcgcc catccaggag gagaacgagg agggcagcca 1681 gtaccagccg ggccagcgga gcagcatcaa cgatttgccg ctgttcagct cgccatcgct 1741 gccgaatatt tcgctggggc gaccgcattt acccaactcg gcgcattcac aacacgccca 1801 ggtggctgcc caggcgcagg cccaggtggc cgcccaggct gctcaggcgg cccaggctca 1861 ggcccatgcc atgttcgccg cactgcatca gcatgtggcc gccgccggtg gccaaccggg 1921 tggctactac aatccgctga gcatggcggc ctttgtgggc cgtcagccgg caccgatgtc 1981 catgatcccg gccaccggga ttgcgcccca gcagccgtcg ccggtggtgc gcagtgcgtc 2041 ggccacctcg acctcctcgt cgcaggcctc gctggtgggc gatgtggcgc caccgcaggc 2101 ccatgccgcc tccaccattc tgccctcgtc ctcgtcctac atgcagcaaa tgggttcggg 2161 cgtcaatatc catgccatct ccgccgtggc agcagcggcg gcagcagcag ccgcagccgc 2221 cggatcgcta ccgccgacca atagccatgg tgcacagcat gggcacagca atcatcatgg 2281 tctggcccat ggccacgggc cgcacgctct gtacggaggc catggtcacc agcacaatgt 2341 gcccatcacg gatgcccagg tggcgcaggt gcatctgcac aagcagggcc accggccgct 2401 gggacggacg cagtcggctc ccctgcccct gggccatccg atgctcacgg gcgccgccca 2461 gctgaatgtg gtccagacgc actacgagaa cagcgaggcg gagcggcagg cctacgagca 2521 ccaggtgctg aaccagaagc tccgccagac cgtcctcacc cgcagcggag cagccgccgc 2581 cgccgccgca gccgctggcg tgggtgtgag tgtgggtgtg gtccgcgagg cgcagctgaa 2641 ggaggaggac gacgactccg cggccgaggt gatggacctc accgacaaga agaagccgcc 2701 gaagacggtg ctgaccagca cgatagccac cagcacgtcg cagaatctgc ccgaagcctt 2761 ggccgcggcg gtggcagcgg ccgcctaccg cggtgccccg ccctccacgt ccagcagcgc 2821 ggcggcggcg acgacggcag ccaacaagat agccggcggc ggcatcaagt tgcgcgatca 2881 ggagtatctg cagcagcagc gggagcagct gttgctcctc cagcaggagg aggagctggc 2941 caagggcctg atgcgaccgc tttcgcgaac gctcagcagt ccgctggtgc cgctggggcc 3001 gcacggtctc agccagattc cggacaccgg gcagcagccg gcgccgatag ccacctcatc 3061 gtcggccgat catataccgc ccgtgaacct ctcgctgccg catcgccagc accgccagct 3121 gatgagcacc ctgtatgcca gccagttgcg caatcaccag cagcttcatc agcctccttc 3181 tagtggctcg cctccccaca aggtcaccac cggcctggcc tacgatccgc tgatgctgaa 3241 gcactcgtgc atttgcggcg acaatgccca gcatccggag cacagcggtc ggctgcagag 3301 cgtctgggcg cgcctgaatg agaccgatct ggtgaagcgc tgcgatcgac tgcgcgcccg 3361 caaggcgacg caggaggagc tgcagacggt gcacacggag gcgcatgcga tgctcttcgg 3421 gtccaatcag tgccagttga gcaggcccaa gctggaaaac acactctcgg cgagctttgt 3481 gcgcctctcg tgcggcggat tgggtgtgga tctggatacc acgtggaatg aacaccatac 3541 ggccaccgct gcccgcatgg ccgcaggatg tgtgatcgat ttggctctca aaacggccaa 3601 gggggatctg cggaacggct tcgccgtcgt ccggccgccg ggacatcatg ccgaggccaa 3661 tctggccatg ggcttttgtt tcttcaactc gatcgccatt gcggccaagc tgctgcgcca 3721 gcggatgccc gaggtgcggc gcatcctcat cgtcgattgg gatgtgcatc atggcaatgg 3781 cacacagcaa gcattctacc aaagtcccga cattctatat ctttccatac atcgacacga 3841 tgacggtaac ttctttcccg gcacaggcgg acccacagag tgcggctccg gtgccggtct 3901 cggcttcaac gtgaacatct catggtccgg ggcactcaat ccgccgctgg gcgacgccga 3961 gtatatcgct gcattccgta ccgttgtgat gcccatcgcg cggagcttca atccggacat 4021 tgtgctggtc tcctcgggct ttgatgcggc caccggtcat ccggcaccgc tgggcggcta 4081 ccatgtctcg cccgcgtgct tcggcttcat gacccgcgaa ctcctccagc tggccaacgg 4141 caaggtggtg ctggccctcg agggcggcta cgatctggcc gccatctgtg attccgccca 4201 ggagtgcgtg cgtgcgctgc tcggcgatcc ggccgctccg atagcccagg ccgagctgga 4261 gcgaccgccc tgccagaatg cgatcaatac gctgcagaag acgatagcca ttcagcaaac 4321 gcattggccc tgcgtcagga tgctggagca cacggtgggt ctgtccgcgc tggaaacgct 4381 caaggtggag cacgacgagt ccgagacgat caatgccatg gccggccttt ccatgcacag 4441 aactctatcc cgcgatgatt ccgaggagcc gatggatcag gatgaaacca aataggcggc 4501 gatgctggct aggatttgtg ggcgtggcac gcgggaatgg cgagagggcg tggccgcaag 4561 ctgctcaatg cacatttagt tatttgttgt agttgaattg attgttgttg ctgttgttgt 4621 tgtggcgctc gcttgcaatt gttgtcgttg tcattgatcg tctatagcca catctatctc 4681 tctctcgatc gatcgttaat attataatcc cctccaaaac tgagaaacat cgaaaataga 4741 gcggggaaag tgtctaaaag aagcagaaca gggcctaaag ttcaaaatgg tggctgtgcc 4801 tccaaaaaaa gaaataatta taataattag aaagaagaat ccttagagaa actggggtgt 4861 ttttttatgc aaatatataa gtagaatata ttgtgagaat ttagttgtag aattccttgg 4921 gaggatcttt tttttttgtt ttttttctag gtgagagaag aggtgtttta acgcacacaa 4981 accaacaaac acacgcaact caatgtatct tattattatt attaatatta tttaagtatg 5041 tgtgttgaaa ggatatagaa gcactaacct aatggtaaat cagtaaacta taaagttaaa 5101 gttaaaagga gatcaggtgc gagaagcgcg tgtttttatt ttaggtaagg ttcaacctca 5161 gagttcccga aatacattta agccccacca ccaccacgcc cacttatccc gccagccccc 5221 aaaaacgaag atcgagcgag agagaggatt tcgtgttatg tagaatgctt tagttgatat 5281 aataagagga tatgagaaaa cttaacagct aacaagttga gggaaaggcg aaaaactgag 5341 aaatcttttt gtacaattta tagtttagtg caagtttcaa gtacaacata ctattattta 5401 aagaattcta tatatattta aatatatatt gtgcaataaa tgtgagaaaa tgaaaatcga 5461 gtgcagagca aaaacaaaac aaaacaaaag aaaaccacac aaaaacagaa acagaaacta 5521 aaacgaataa gagagaattg ttgttaaatg ttgccgagat cttatatacg tatgtatacc 5581 taataactgt tacaataata accctttata tatataaaaa acaaatgaag tatatatata 5641 tttaaatgca catgtgtatt caccgtgtgt gtaacgataa cgatgttcaa caaatgtctg 5701 aaatgaagta aaactattat tatatgtaaa taaaacacaa aacaaagtga acaattttaa 5761 taaaaaaaaa ccaaatccga aaacattcac gctcacacac acacacacac ttacgtcctg 5821 ggcaggaccc gaaggcgtga atcgggaaaa ttctggaata cccgtttaac cgctaaccgt 5881 taactgtaaa accgctgtaa ttgtattcgt actcgtgtac ctttagctgt ctatagccgt 5941 ctctctctaa ctcgctacct aacagtaaag gagcaactca aaaaacggaa gaaggagcaa 6001 cagacaagga tcaaaagaat tagcaggaga agagaaacaa ggaggagaat aagcacaacg 6061 agaaatggac cgattggctc caactggatg aaacaattgt taacaaatcg aaacagaaac 6121 taaaaactga acttaaaaaa ttaaatcgca aatgtaacta ttaatctaag cgaaggagaa 6181 gccgttgtca gttttttttg ggtttttatt tttaaacgca gagaaaacgc aacataaaaa 6241 tctaaaaatt ttagaagatt ttctgcgttt aatctctgat ttttccttgg ttttatttcc 6301 ggttctccca ttttaaattc cgaaccccgc catcccattt acctctcctg ctaattgagc 6361 gtttttgaaa aaccttttga gctgataaaa agaaacatta aaacttaaat tattctaact 6421 aaataaaata ttgttgttgc gcactgcaaa aaaaaaacta aaaacaaaaa taattccata 6481 agctgagaaa tagttaaaag tggtttttag caaaaggaaa accaaatcaa atatttatat 6541 tttgtttatt gttgcacaaa taagtccaag gaacagaaac catgaaacaa ttaagagtaa 6601 tattgtgtgt cgctttttct aaacgaaata aatcgaagaa atcgtcaaga gtaa