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LOCUS XM_017159708 6688 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_017159708 VERSION XM_017159708.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017159708.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6688 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6688 /gene="HDAC4" /note="histone deacetylase 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108069580" CDS 726..4529 /gene="HDAC4" /codon_start=1 /product="histone deacetylase 4 isoform X2" /protein_id="XP_017015197.2" /db_xref="GeneID:108069580" /translation="MSSPDDRIPIHDLPSEAGSDERLLHITPGTLTLDFKPHPAVDID QQIMELKKSQELQKQRLFHTFQEQSKQMELEHKLQLEHKYQELRTESMVTAAAAAAAV AEEQHRQQQQQQHQHQQHQQHQQQQQQHQQQQQHQQQQQQQQGRGRDGMKLNKTCSAN ASPEVKQILNCFIMSRKSQAAQSNGTTTSPYRNRGVVKSSSGESLPAGTVTSAHPYKI PQPPSSLLKYESDFPLRKTASEPNLLKIRLKQSVIERKARIGGPVGARRHERLLQAAQ RRQQKNSVLTNCNSTPDSGPNSPPSAAALSVGVVGSRGSPTSAPIQEENEEGSQYQPG QRSSINDLPLFSSPSLPNISLGRPHLPNSAHSQHAQVAAQAQAQVAAQAAQAAQAQAH AMFAALHQHVAAAGGQPGGYYNPLSMAAFVGRQPAPMSMIPATGIAPQQPSPVVRSAS ATSTSSSQASLVGDVAPPQAHAASTILPSSSSYMQQMGSGVNIHAISAVAAAAAAAAA AAGSLPPTNSHGAQHGHSNHHGLAHGHGPHALYGGHGHQHNVPITDAQVAQVHLHKQG HRPLGRTQSAPLPLGHPMLTGAAQLNVVQTHYENSEAERQAYEHQVLNQKLRQTVLTR SGAAAAAAAAAGVGVSVGVVREAQLKEEDDDSAAEVMDLTDKKKPPKTVLTSTIATST SQNLPEALAAAVAAAAYRGAPPSTSSSAAAATTAANKIAGGGIKLRDQEYLQQQREQL LLLQQEEELAKGLMRPLSRTLSSPLVPLGPHGLSQIPDTGQQPAPIATSSSADHIPPV NLSLPHRQHRQLMSTLYASQLRNHQQLHQPPSSGSPPHKVTTGLAYDPLMLKHSCICG DNAQHPEHSGRLQSVWARLNETDLVKRCDRLRARKATQEELQTVHTEAHAMLFGSNQC QLSRPKLENTLSASFVRLSCGGLGVDLDTTWNEHHTATAARMAAGCVIDLALKTAKGD LRNGFAVVRPPGHHAEANLAMGFCFFNSIAIAAKLLRQRMPEVRRILIVDWDVHHGNG TQQAFYQSPDILYLSIHRHDDGNFFPGTGGPTECGSGAGLGFNVNISWSGALNPPLGD AEYIAAFRTVVMPIARSFNPDIVLVSSGFDAATGHPAPLGGYHVSPACFGFMTRELLQ LANGKVVLALEGGYDLAAICDSAQECVRALLGDPAAPIAQAELERPPCQNAINTLQKT IAIQQTHWPCVRMLEHTVGLSALETLKVEHDESETINAMAGLSMHRTLSRDDSEEPMD QDETK" misc_feature 852..>968 /gene="HDAC4" /note="Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9); Region: ClassIIa_HDAC_Gln-rich-N; cl25407" /db_xref="CDD:421006" misc_feature order(864..866,876..878,888..890,897..899,909..911, 918..920,930..935,942..947,954..956,966..968) /gene="HDAC4" /note="dimer interface A, D [polypeptide binding]; other site" /db_xref="CDD:188886" misc_feature <2280..>2372 /gene="HDAC4" /note="CDF family Co(II)/Ni(II) efflux transporter DmeF; Region: CDF_efflux_DmeF; NF033827" /db_xref="CDD:468196" misc_feature 3237..4361 /gene="HDAC4" /note="Histone deacetylases, class IIa; Region: HDAC_classIIa; cd11681" /db_xref="CDD:212544" misc_feature order(3678..3683,3705..3710,3795..3797,3801..3803, 4077..4079,4197..4199) /gene="HDAC4" /note="active site" /db_xref="CDD:212544" polyA_site 6688 /gene="HDAC4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcctggccac accaatattt gtctttattt taataaaata atcaaataat cgtcgcttcg 61 gattcggaac atagaaattt gtatttttcg cttccagcca gtccaaccgc agatcgcgcg 121 tttttccccc actaaaaaaa aacccgaaaa ttcgaaaaga atattttctt gttttttttt 181 ctgtttttcc acggcgaata ttcaattttt ttgtaaaata tcaaaacaac aacaacaaaa 241 agtgcgtgcg cgtgcagaaa cgacgaaaga aaaaaaacgt acaaattgtg ggcgaatcaa 301 caagcaaaag agaatgagcg atgatgagga gaagaggcaa aagcagaaaa agaaactgcg 361 aaaactgctt gtgaagtgac aaaaataaca aaagcaacaa caagtaacga aagagaaaag 421 caaaaaggcg aaaaaagagc gcaaaaaata cgtctacaaa aacggcagca gcagcaacaa 481 cacaaaaatt aacttaaaaa agtcgtgaat tcaacgtata catatatata cagcaaacac 541 acacacacac gcgcgccgag tgagagagcg tgcgttattt atatttattt tatattttcg 601 ttaatcattt ttcgcatttt gtggaacaag ttggaaaagc gacaatacaa actacaacaa 661 aagcagcagc aagcagtttg caccacttgg aagaggttcc gccctccccc aattccatat 721 gcaaaatgtc tagtcccgac gatagaatac caatacacga tctgccatca gaagccggaa 781 gcgatgagcg attgctgcac ataacgccgg gcactctgac attggacttc aagccccatc 841 cagcggtgga tatcgatcag cagatcatgg agctcaagaa gagccaggaa ttgcagaagc 901 agcggctttt ccacacgttt caggagcaat cgaagcaaat ggaattggag cataaactcc 961 aactggagca caagtatcaa gaattgcgaa ccgagagcat ggtgacagcc gccgccgcag 1021 cagcagcggt ggctgaggag cagcatcgcc agcagcagca gcagcaacat cagcatcagc 1081 agcaccagca acatcagcag cagcaacagc aacatcaaca gcagcagcaa caccaacagc 1141 agcaacagca gcagcaggga cgcggcaggg acggcatgaa actcaacaag acctgtagcg 1201 ccaatgccag tcccgaggtc aaacagattc tgaactgctt catcatgagc agaaagtcgc 1261 aggcggcgca gtcaaatggc acgacaacgt cgccctacag gaatcgcggc gtggtgaaga 1321 gctcctcggg cgaatccctc ccagctggaa ccgtgaccag tgcgcatccg tacaaaatac 1381 ctcagccgcc ctcctcactg ctcaaatatg aatctgattt tccgctgagg aagacagcat 1441 ccgaaccgaa cctgctgaag atccggctga agcagagcgt catcgagcgc aaggcccgaa 1501 tcggtggacc ggtgggagcc cggcgccacg aacgcctcct ccaggcggcg cagcgcaggc 1561 agcaaaagaa ctccgttctc acaaactgca acagtacacc ggactcggga cccaattccc 1621 cgccctcggc ggccgccctg tcggtgggcg tggtcggtag ccgcggatcg ccgaccagtg 1681 cgcccatcca ggaggagaac gaggagggca gccagtacca gccgggccag cggagcagca 1741 tcaacgattt gccgctgttc agctcgccat cgctgccgaa tatttcgctg gggcgaccgc 1801 atttacccaa ctcggcgcat tcacaacacg cccaggtggc tgcccaggcg caggcccagg 1861 tggccgccca ggctgctcag gcggcccagg ctcaggccca tgccatgttc gccgcactgc 1921 atcagcatgt ggccgccgcc ggtggccaac cgggtggcta ctacaatccg ctgagcatgg 1981 cggcctttgt gggccgtcag ccggcaccga tgtccatgat cccggccacc gggattgcgc 2041 cccagcagcc gtcgccggtg gtgcgcagtg cgtcggccac ctcgacctcc tcgtcgcagg 2101 cctcgctggt gggcgatgtg gcgccaccgc aggcccatgc cgcctccacc attctgccct 2161 cgtcctcgtc ctacatgcag caaatgggtt cgggcgtcaa tatccatgcc atctccgccg 2221 tggcagcagc ggcggcagca gcagccgcag ccgccggatc gctaccgccg accaatagcc 2281 atggtgcaca gcatgggcac agcaatcatc atggtctggc ccatggccac gggccgcacg 2341 ctctgtacgg aggccatggt caccagcaca atgtgcccat cacggatgcc caggtggcgc 2401 aggtgcatct gcacaagcag ggccaccggc cgctgggacg gacgcagtcg gctcccctgc 2461 ccctgggcca tccgatgctc acgggcgccg cccagctgaa tgtggtccag acgcactacg 2521 agaacagcga ggcggagcgg caggcctacg agcaccaggt gctgaaccag aagctccgcc 2581 agaccgtcct cacccgcagc ggagcagccg ccgccgccgc cgcagccgct ggcgtgggtg 2641 tgagtgtggg tgtggtccgc gaggcgcagc tgaaggagga ggacgacgac tccgcggccg 2701 aggtgatgga cctcaccgac aagaagaagc cgccgaagac ggtgctgacc agcacgatag 2761 ccaccagcac gtcgcagaat ctgcccgaag ccttggccgc ggcggtggca gcggccgcct 2821 accgcggtgc cccgccctcc acgtccagca gcgcggcggc ggcgacgacg gcagccaaca 2881 agatagccgg cggcggcatc aagttgcgcg atcaggagta tctgcagcag cagcgggagc 2941 agctgttgct cctccagcag gaggaggagc tggccaaggg cctgatgcga ccgctttcgc 3001 gaacgctcag cagtccgctg gtgccgctgg ggccgcacgg tctcagccag attccggaca 3061 ccgggcagca gccggcgccg atagccacct catcgtcggc cgatcatata ccgcccgtga 3121 acctctcgct gccgcatcgc cagcaccgcc agctgatgag caccctgtat gccagccagt 3181 tgcgcaatca ccagcagctt catcagcctc cttctagtgg ctcgcctccc cacaaggtca 3241 ccaccggcct ggcctacgat ccgctgatgc tgaagcactc gtgcatttgc ggcgacaatg 3301 cccagcatcc ggagcacagc ggtcggctgc agagcgtctg ggcgcgcctg aatgagaccg 3361 atctggtgaa gcgctgcgat cgactgcgcg cccgcaaggc gacgcaggag gagctgcaga 3421 cggtgcacac ggaggcgcat gcgatgctct tcgggtccaa tcagtgccag ttgagcaggc 3481 ccaagctgga aaacacactc tcggcgagct ttgtgcgcct ctcgtgcggc ggattgggtg 3541 tggatctgga taccacgtgg aatgaacacc atacggccac cgctgcccgc atggccgcag 3601 gatgtgtgat cgatttggct ctcaaaacgg ccaaggggga tctgcggaac ggcttcgccg 3661 tcgtccggcc gccgggacat catgccgagg ccaatctggc catgggcttt tgtttcttca 3721 actcgatcgc cattgcggcc aagctgctgc gccagcggat gcccgaggtg cggcgcatcc 3781 tcatcgtcga ttgggatgtg catcatggca atggcacaca gcaagcattc taccaaagtc 3841 ccgacattct atatctttcc atacatcgac acgatgacgg taacttcttt cccggcacag 3901 gcggacccac agagtgcggc tccggtgccg gtctcggctt caacgtgaac atctcatggt 3961 ccggggcact caatccgccg ctgggcgacg ccgagtatat cgctgcattc cgtaccgttg 4021 tgatgcccat cgcgcggagc ttcaatccgg acattgtgct ggtctcctcg ggctttgatg 4081 cggccaccgg tcatccggca ccgctgggcg gctaccatgt ctcgcccgcg tgcttcggct 4141 tcatgacccg cgaactcctc cagctggcca acggcaaggt ggtgctggcc ctcgagggcg 4201 gctacgatct ggccgccatc tgtgattccg cccaggagtg cgtgcgtgcg ctgctcggcg 4261 atccggccgc tccgatagcc caggccgagc tggagcgacc gccctgccag aatgcgatca 4321 atacgctgca gaagacgata gccattcagc aaacgcattg gccctgcgtc aggatgctgg 4381 agcacacggt gggtctgtcc gcgctggaaa cgctcaaggt ggagcacgac gagtccgaga 4441 cgatcaatgc catggccggc ctttccatgc acagaactct atcccgcgat gattccgagg 4501 agccgatgga tcaggatgaa accaaatagg cggcgatgct ggctaggatt tgtgggcgtg 4561 gcacgcggga atggcgagag ggcgtggccg caagctgctc aatgcacatt tagttatttg 4621 ttgtagttga attgattgtt gttgctgttg ttgttgtggc gctcgcttgc aattgttgtc 4681 gttgtcattg atcgtctata gccacatcta tctctctctc gatcgatcgt taatattata 4741 atcccctcca aaactgagaa acatcgaaaa tagagcgggg aaagtgtcta aaagaagcag 4801 aacagggcct aaagttcaaa atggtggctg tgcctccaaa aaaagaaata attataataa 4861 ttagaaagaa gaatccttag agaaactggg gtgttttttt atgcaaatat ataagtagaa 4921 tatattgtga gaatttagtt gtagaattcc ttgggaggat cttttttttt tgtttttttt 4981 ctaggtgaga gaagaggtgt tttaacgcac acaaaccaac aaacacacgc aactcaatgt 5041 atcttattat tattattaat attatttaag tatgtgtgtt gaaaggatat agaagcacta 5101 acctaatggt aaatcagtaa actataaagt taaagttaaa aggagatcag gtgcgagaag 5161 cgcgtgtttt tattttaggt aaggttcaac ctcagagttc ccgaaataca tttaagcccc 5221 accaccacca cgcccactta tcccgccagc ccccaaaaac gaagatcgag cgagagagag 5281 gatttcgtgt tatgtagaat gctttagttg atataataag aggatatgag aaaacttaac 5341 agctaacaag ttgagggaaa ggcgaaaaac tgagaaatct ttttgtacaa tttatagttt 5401 agtgcaagtt tcaagtacaa catactatta tttaaagaat tctatatata tttaaatata 5461 tattgtgcaa taaatgtgag aaaatgaaaa tcgagtgcag agcaaaaaca aaacaaaaca 5521 aaagaaaacc acacaaaaac agaaacagaa actaaaacga ataagagaga attgttgtta 5581 aatgttgccg agatcttata tacgtatgta tacctaataa ctgttacaat aataaccctt 5641 tatatatata aaaaacaaat gaagtatata tatatttaaa tgcacatgtg tattcaccgt 5701 gtgtgtaacg ataacgatgt tcaacaaatg tctgaaatga agtaaaacta ttattatatg 5761 taaataaaac acaaaacaaa gtgaacaatt ttaataaaaa aaaaccaaat ccgaaaacat 5821 tcacgctcac acacacacac acacttacgt cctgggcagg acccgaaggc gtgaatcggg 5881 aaaattctgg aatacccgtt taaccgctaa ccgttaactg taaaaccgct gtaattgtat 5941 tcgtactcgt gtacctttag ctgtctatag ccgtctctct ctaactcgct acctaacagt 6001 aaaggagcaa ctcaaaaaac ggaagaagga gcaacagaca aggatcaaaa gaattagcag 6061 gagaagagaa acaaggagga gaataagcac aacgagaaat ggaccgattg gctccaactg 6121 gatgaaacaa ttgttaacaa atcgaaacag aaactaaaaa ctgaacttaa aaaattaaat 6181 cgcaaatgta actattaatc taagcgaagg agaagccgtt gtcagttttt tttgggtttt 6241 tatttttaaa cgcagagaaa acgcaacata aaaatctaaa aattttagaa gattttctgc 6301 gtttaatctc tgatttttcc ttggttttat ttccggttct cccattttaa attccgaacc 6361 ccgccatccc atttacctct cctgctaatt gagcgttttt gaaaaacctt ttgagctgat 6421 aaaaagaaac attaaaactt aaattattct aactaaataa aatattgttg ttgcgcactg 6481 caaaaaaaaa actaaaaaca aaaataattc cataagctga gaaatagtta aaagtggttt 6541 ttagcaaaag gaaaaccaaa tcaaatattt atattttgtt tattgttgca caaataagtc 6601 caaggaacag aaaccatgaa acaattaaga gtaatattgt gtgtcgcttt ttctaaacga 6661 aataaatcga agaaatcgtc aagagtaa