Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017159706 6717 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017159706 VERSION XM_017159706.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017159706.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6717 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6717 /gene="HDAC4" /note="histone deacetylase 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:108069580" CDS 725..4558 /gene="HDAC4" /codon_start=1 /product="histone deacetylase 4 isoform X1" /protein_id="XP_017015195.2" /db_xref="GeneID:108069580" /translation="MSSPDDRIPIHDLPSEAGSDERLLHITPGTLTLDFKPHPAVDID QQIMELKKSQELQKQRLFHTFQEQSKQMELEHKLQLEHKYQFAVNSHGAFQELRTESM VTAAAAAAAVAEEQHRQQQQQQHQHQQHQQHQQQQQQHQQQQQHQQQQQQQQGRGRDG MKLNKTCSANASPEVKQILNCFIMSRKSQAAQSNGTTTSPYRNRGVVKSSSGESLPAG TVTSAHPYKIPQPPSSLLKYESDFPLRKTASEPNLLKIRLKQSVIERKARIGGPVGAR RHERLLQAAQRRQQKNSVLTNCNSTPDSGPNSPPSAAALSVGVVGSRGSPTSAPIQEE NEEGSQYQPGQRSSINDLPLFSSPSLPNISLGRPHLPNSAHSQHAQVAAQAQAQVAAQ AAQAAQAQAHAMFAALHQHVAAAGGQPGGYYNPLSMAAFVGRQPAPMSMIPATGIAPQ QPSPVVRSASATSTSSSQASLVGDVAPPQAHAASTILPSSSSYMQQMGSGVNIHAISA VAAAAAAAAAAAGSLPPTNSHGAQHGHSNHHGLAHGHGPHALYGGHGHQHNVPITDAQ VAQVHLHKQGHRPLGRTQSAPLPLGHPMLTGAAQLNVVQTHYENSEAERQAYEHQVLN QKLRQTVLTRSGAAAAAAAAAGVGVSVGVVREAQLKEEDDDSAAEVMDLTDKKKPPKT VLTSTIATSTSQNLPEALAAAVAAAAYRGAPPSTSSSAAAATTAANKIAGGGIKLRDQ EYLQQQREQLLLLQQEEELAKGLMRPLSRTLSSPLVPLGPHGLSQIPDTGQQPAPIAT SSSADHIPPVNLSLPHRQHRQLMSTLYASQLRNHQQLHQPPSSGSPPHKVTTGLAYDP LMLKHSCICGDNAQHPEHSGRLQSVWARLNETDLVKRCDRLRARKATQEELQTVHTEA HAMLFGSNQCQLSRPKLENTLSASFVRLSCGGLGVDLDTTWNEHHTATAARMAAGCVI DLALKTAKGDLRNGFAVVRPPGHHAEANLAMGFCFFNSIAIAAKLLRQRMPEVRRILI VDWDVHHGNGTQQAFYQSPDILYLSIHRHDDGNFFPGTGGPTECGSGAGLGFNVNISW SGALNPPLGDAEYIAAFRTVVMPIARSFNPDIVLVSSGFDAATGHPAPLGGYHVSPAC FGFMTRELLQLANGKVVLALEGGYDLAAICDSAQECVRALLGDPAAPIAQAELERPPC QNAINTLQKTIAIQQTHWPCVRMLEHTVGLSALETLKVEHDESETINAMAGLSMHRTL SRDDSEEPMDQDETK" misc_feature 851..>1015 /gene="HDAC4" /note="Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9); Region: ClassIIa_HDAC_Gln-rich-N; cl25407" /db_xref="CDD:421006" misc_feature order(863..865,875..877,887..889,896..898,908..910, 917..919,929..934,941..946,953..955,965..967) /gene="HDAC4" /note="dimer interface A, D [polypeptide binding]; other site" /db_xref="CDD:188886" misc_feature <2309..>2401 /gene="HDAC4" /note="CDF family Co(II)/Ni(II) efflux transporter DmeF; Region: CDF_efflux_DmeF; NF033827" /db_xref="CDD:468196" misc_feature 3266..4390 /gene="HDAC4" /note="Histone deacetylases, class IIa; Region: HDAC_classIIa; cd11681" /db_xref="CDD:212544" misc_feature order(3707..3712,3734..3739,3824..3826,3830..3832, 4106..4108,4226..4228) /gene="HDAC4" /note="active site" /db_xref="CDD:212544" polyA_site 6717 /gene="HDAC4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cctggccaca ccaatatttg tctttatttt aataaaataa tcaaataatc gtcgcttcgg 61 attcggaaca tagaaatttg tatttttcgc ttccagccag tccaaccgca gatcgcgcgt 121 ttttccccca ctaaaaaaaa acccgaaaat tcgaaaagaa tattttcttg tttttttttc 181 tgtttttcca cggcgaatat tcaatttttt tgtaaaatat caaaacaaca acaacaaaaa 241 gtgcgtgcgc gtgcagaaac gacgaaagaa aaaaaacgta caaattgtgg gcgaatcaac 301 aagcaaaaga gaatgagcga tgatgaggag aagaggcaaa agcagaaaaa gaaactgcga 361 aaactgcttg tgaagtgaca aaaataacaa aagcaacaac aagtaacgaa agagaaaagc 421 aaaaaggcga aaaaagagcg caaaaaatac gtctacaaaa acggcagcag cagcaacaac 481 acaaaaatta acttaaaaaa gtcgtgaatt caacgtatac atatatatac agcaaacaca 541 cacacacacg cgcgccgagt gagagagcgt gcgttattta tatttatttt atattttcgt 601 taatcatttt tcgcattttg tggaacaagt tggaaaagcg acaatacaaa ctacaacaaa 661 agcagcagca agcagtttgc accacttgga agaggttccg ccctccccca attccatatg 721 caaaatgtct agtcccgacg atagaatacc aatacacgat ctgccatcag aagccggaag 781 cgatgagcga ttgctgcaca taacgccggg cactctgaca ttggacttca agccccatcc 841 agcggtggat atcgatcagc agatcatgga gctcaagaag agccaggaat tgcagaagca 901 gcggcttttc cacacgtttc aggagcaatc gaagcaaatg gaattggagc ataaactcca 961 actggagcac aagtatcaat ttgcggtgaa ttcacatggc gctttccagg aattgcgaac 1021 cgagagcatg gtgacagccg ccgccgcagc agcagcggtg gctgaggagc agcatcgcca 1081 gcagcagcag cagcaacatc agcatcagca gcaccagcaa catcagcagc agcaacagca 1141 acatcaacag cagcagcaac accaacagca gcaacagcag cagcagggac gcggcaggga 1201 cggcatgaaa ctcaacaaga cctgtagcgc caatgccagt cccgaggtca aacagattct 1261 gaactgcttc atcatgagca gaaagtcgca ggcggcgcag tcaaatggca cgacaacgtc 1321 gccctacagg aatcgcggcg tggtgaagag ctcctcgggc gaatccctcc cagctggaac 1381 cgtgaccagt gcgcatccgt acaaaatacc tcagccgccc tcctcactgc tcaaatatga 1441 atctgatttt ccgctgagga agacagcatc cgaaccgaac ctgctgaaga tccggctgaa 1501 gcagagcgtc atcgagcgca aggcccgaat cggtggaccg gtgggagccc ggcgccacga 1561 acgcctcctc caggcggcgc agcgcaggca gcaaaagaac tccgttctca caaactgcaa 1621 cagtacaccg gactcgggac ccaattcccc gccctcggcg gccgccctgt cggtgggcgt 1681 ggtcggtagc cgcggatcgc cgaccagtgc gcccatccag gaggagaacg aggagggcag 1741 ccagtaccag ccgggccagc ggagcagcat caacgatttg ccgctgttca gctcgccatc 1801 gctgccgaat atttcgctgg ggcgaccgca tttacccaac tcggcgcatt cacaacacgc 1861 ccaggtggct gcccaggcgc aggcccaggt ggccgcccag gctgctcagg cggcccaggc 1921 tcaggcccat gccatgttcg ccgcactgca tcagcatgtg gccgccgccg gtggccaacc 1981 gggtggctac tacaatccgc tgagcatggc ggcctttgtg ggccgtcagc cggcaccgat 2041 gtccatgatc ccggccaccg ggattgcgcc ccagcagccg tcgccggtgg tgcgcagtgc 2101 gtcggccacc tcgacctcct cgtcgcaggc ctcgctggtg ggcgatgtgg cgccaccgca 2161 ggcccatgcc gcctccacca ttctgccctc gtcctcgtcc tacatgcagc aaatgggttc 2221 gggcgtcaat atccatgcca tctccgccgt ggcagcagcg gcggcagcag cagccgcagc 2281 cgccggatcg ctaccgccga ccaatagcca tggtgcacag catgggcaca gcaatcatca 2341 tggtctggcc catggccacg ggccgcacgc tctgtacgga ggccatggtc accagcacaa 2401 tgtgcccatc acggatgccc aggtggcgca ggtgcatctg cacaagcagg gccaccggcc 2461 gctgggacgg acgcagtcgg ctcccctgcc cctgggccat ccgatgctca cgggcgccgc 2521 ccagctgaat gtggtccaga cgcactacga gaacagcgag gcggagcggc aggcctacga 2581 gcaccaggtg ctgaaccaga agctccgcca gaccgtcctc acccgcagcg gagcagccgc 2641 cgccgccgcc gcagccgctg gcgtgggtgt gagtgtgggt gtggtccgcg aggcgcagct 2701 gaaggaggag gacgacgact ccgcggccga ggtgatggac ctcaccgaca agaagaagcc 2761 gccgaagacg gtgctgacca gcacgatagc caccagcacg tcgcagaatc tgcccgaagc 2821 cttggccgcg gcggtggcag cggccgccta ccgcggtgcc ccgccctcca cgtccagcag 2881 cgcggcggcg gcgacgacgg cagccaacaa gatagccggc ggcggcatca agttgcgcga 2941 tcaggagtat ctgcagcagc agcgggagca gctgttgctc ctccagcagg aggaggagct 3001 ggccaagggc ctgatgcgac cgctttcgcg aacgctcagc agtccgctgg tgccgctggg 3061 gccgcacggt ctcagccaga ttccggacac cgggcagcag ccggcgccga tagccacctc 3121 atcgtcggcc gatcatatac cgcccgtgaa cctctcgctg ccgcatcgcc agcaccgcca 3181 gctgatgagc accctgtatg ccagccagtt gcgcaatcac cagcagcttc atcagcctcc 3241 ttctagtggc tcgcctcccc acaaggtcac caccggcctg gcctacgatc cgctgatgct 3301 gaagcactcg tgcatttgcg gcgacaatgc ccagcatccg gagcacagcg gtcggctgca 3361 gagcgtctgg gcgcgcctga atgagaccga tctggtgaag cgctgcgatc gactgcgcgc 3421 ccgcaaggcg acgcaggagg agctgcagac ggtgcacacg gaggcgcatg cgatgctctt 3481 cgggtccaat cagtgccagt tgagcaggcc caagctggaa aacacactct cggcgagctt 3541 tgtgcgcctc tcgtgcggcg gattgggtgt ggatctggat accacgtgga atgaacacca 3601 tacggccacc gctgcccgca tggccgcagg atgtgtgatc gatttggctc tcaaaacggc 3661 caagggggat ctgcggaacg gcttcgccgt cgtccggccg ccgggacatc atgccgaggc 3721 caatctggcc atgggctttt gtttcttcaa ctcgatcgcc attgcggcca agctgctgcg 3781 ccagcggatg cccgaggtgc ggcgcatcct catcgtcgat tgggatgtgc atcatggcaa 3841 tggcacacag caagcattct accaaagtcc cgacattcta tatctttcca tacatcgaca 3901 cgatgacggt aacttctttc ccggcacagg cggacccaca gagtgcggct ccggtgccgg 3961 tctcggcttc aacgtgaaca tctcatggtc cggggcactc aatccgccgc tgggcgacgc 4021 cgagtatatc gctgcattcc gtaccgttgt gatgcccatc gcgcggagct tcaatccgga 4081 cattgtgctg gtctcctcgg gctttgatgc ggccaccggt catccggcac cgctgggcgg 4141 ctaccatgtc tcgcccgcgt gcttcggctt catgacccgc gaactcctcc agctggccaa 4201 cggcaaggtg gtgctggccc tcgagggcgg ctacgatctg gccgccatct gtgattccgc 4261 ccaggagtgc gtgcgtgcgc tgctcggcga tccggccgct ccgatagccc aggccgagct 4321 ggagcgaccg ccctgccaga atgcgatcaa tacgctgcag aagacgatag ccattcagca 4381 aacgcattgg ccctgcgtca ggatgctgga gcacacggtg ggtctgtccg cgctggaaac 4441 gctcaaggtg gagcacgacg agtccgagac gatcaatgcc atggccggcc tttccatgca 4501 cagaactcta tcccgcgatg attccgagga gccgatggat caggatgaaa ccaaataggc 4561 ggcgatgctg gctaggattt gtgggcgtgg cacgcgggaa tggcgagagg gcgtggccgc 4621 aagctgctca atgcacattt agttatttgt tgtagttgaa ttgattgttg ttgctgttgt 4681 tgttgtggcg ctcgcttgca attgttgtcg ttgtcattga tcgtctatag ccacatctat 4741 ctctctctcg atcgatcgtt aatattataa tcccctccaa aactgagaaa catcgaaaat 4801 agagcgggga aagtgtctaa aagaagcaga acagggccta aagttcaaaa tggtggctgt 4861 gcctccaaaa aaagaaataa ttataataat tagaaagaag aatccttaga gaaactgggg 4921 tgttttttta tgcaaatata taagtagaat atattgtgag aatttagttg tagaattcct 4981 tgggaggatc tttttttttt gttttttttc taggtgagag aagaggtgtt ttaacgcaca 5041 caaaccaaca aacacacgca actcaatgta tcttattatt attattaata ttatttaagt 5101 atgtgtgttg aaaggatata gaagcactaa cctaatggta aatcagtaaa ctataaagtt 5161 aaagttaaaa ggagatcagg tgcgagaagc gcgtgttttt attttaggta aggttcaacc 5221 tcagagttcc cgaaatacat ttaagcccca ccaccaccac gcccacttat cccgccagcc 5281 cccaaaaacg aagatcgagc gagagagagg atttcgtgtt atgtagaatg ctttagttga 5341 tataataaga ggatatgaga aaacttaaca gctaacaagt tgagggaaag gcgaaaaact 5401 gagaaatctt tttgtacaat ttatagttta gtgcaagttt caagtacaac atactattat 5461 ttaaagaatt ctatatatat ttaaatatat attgtgcaat aaatgtgaga aaatgaaaat 5521 cgagtgcaga gcaaaaacaa aacaaaacaa aagaaaacca cacaaaaaca gaaacagaaa 5581 ctaaaacgaa taagagagaa ttgttgttaa atgttgccga gatcttatat acgtatgtat 5641 acctaataac tgttacaata ataacccttt atatatataa aaaacaaatg aagtatatat 5701 atatttaaat gcacatgtgt attcaccgtg tgtgtaacga taacgatgtt caacaaatgt 5761 ctgaaatgaa gtaaaactat tattatatgt aaataaaaca caaaacaaag tgaacaattt 5821 taataaaaaa aaaccaaatc cgaaaacatt cacgctcaca cacacacaca cacttacgtc 5881 ctgggcagga cccgaaggcg tgaatcggga aaattctgga atacccgttt aaccgctaac 5941 cgttaactgt aaaaccgctg taattgtatt cgtactcgtg tacctttagc tgtctatagc 6001 cgtctctctc taactcgcta cctaacagta aaggagcaac tcaaaaaacg gaagaaggag 6061 caacagacaa ggatcaaaag aattagcagg agaagagaaa caaggaggag aataagcaca 6121 acgagaaatg gaccgattgg ctccaactgg atgaaacaat tgttaacaaa tcgaaacaga 6181 aactaaaaac tgaacttaaa aaattaaatc gcaaatgtaa ctattaatct aagcgaagga 6241 gaagccgttg tcagtttttt ttgggttttt atttttaaac gcagagaaaa cgcaacataa 6301 aaatctaaaa attttagaag attttctgcg tttaatctct gatttttcct tggttttatt 6361 tccggttctc ccattttaaa ttccgaaccc cgccatccca tttacctctc ctgctaattg 6421 agcgtttttg aaaaaccttt tgagctgata aaaagaaaca ttaaaactta aattattcta 6481 actaaataaa atattgttgt tgcgcactgc aaaaaaaaaa ctaaaaacaa aaataattcc 6541 ataagctgag aaatagttaa aagtggtttt tagcaaaagg aaaaccaaat caaatattta 6601 tattttgttt attgttgcac aaataagtcc aaggaacaga aaccatgaaa caattaagag 6661 taatattgtg tgtcgctttt tctaaacgaa ataaatcgaa gaaatcgtca agagtaa