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PREDICTED: Drosophila takahashii hemipterous (hep), transcript


LOCUS       XM_017157703            5515 bp    mRNA    linear   INV 09-DEC-2024
            variant X1, mRNA.
ACCESSION   XM_017157703
VERSION     XM_017157703.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017157703.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5515
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..5515
                     /gene="hep"
                     /note="hemipterous; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 6 Proteins"
                     /db_xref="GeneID:108068245"
     CDS             641..4198
                     /gene="hep"
                     /codon_start=1
                     /product="dual specificity mitogen-activated protein
                     kinase kinase hemipterous isoform X1"
                     /protein_id="XP_017013192.2"
                     /db_xref="GeneID:108068245"
                     /translation="MSTIEFETIGSRLQSLEAKLQAQNESHDQIVSSARVPPLATSAS
                     ASATTSASSHGMGIGSGISIAQRPAPPVPHATPIASANATASSSSASASAFAFASAST
                     SASASSASAAPSTGAFGGTYTPPTTRVPRATPTLPLLSSGPGGGGGFNRTRPVILPLP
                     TPPHPPVSETDKKLKIIMEQTGKLNINGRQYPTDINDLKHLGDLGNGTSGNVVKMMHL
                     SSNMIIAVKQMRRTGNAEENKRILMDLDVVLKSHDCKYIVKCLGCFVRDPDVWICMEL
                     MSMCFDKLLKLSKKPVPEQILGKVTVATVNALSYLKDKHGVIHRDVKPSNILIDERGN
                     IKLCDFGISGRLVDSKANTRSAGCAAYMAPERIDPKKPKYDIRADVWSLGITLVELAT
                     ARSPYEGCNTDFEVLTKVLDSEPPCLPYGEGFNFTQQFRDFVIKCLTKNHQDRPKYPE
                     LLAQPFIRTYEITKVDVPNWFQSIKDSRLRANGDPNPLQRATATGSGGGSGCGSLAGS
                     GSAGGSGAIKYGRTMAQSPTNPQKTIKPTQIPSYQQQQQSQYFMQSATQLPQTTTPTA
                     TTNCFGGSGNGRGNGNGSGSGSSSSASPLSPPSGGGGVGDLNRLYRKSPFMQRKLSNG
                     SHHPHYKYNDESPKKESMFSSIGQSILRNLTTSPFSQKKHNSAAATAITIPLPHNNQT
                     TLFTDAATATANAIATATATTPPNIAAAAAAAAPTTTPTATPTWRLPADNSQAYDSCD
                     SSSNATTTLNLALSSPSPSLPRKQFATESPTLQLASQQQQQQPQRLQPGNQSPIVLQR
                     FYHQQNQLREKEAAERYQQQRQQPQTIGVTSTNPFHSNYVPPPPSTHSTSSQSSTQST
                     CSQIAVNPASLSPSTGSGGDAAAGHFGAGGNGEPLQYQPLPIAAEATATSPTLLPRSP
                     DPQQSDYGAGGSSMVASKLSKLYARRQLLGQSSSSGASSSSLDGCSREQHDAGWFNTL
                     AGAMKRQFATYVKTQLNSTATSPVAASAASASMDRDQEPVHPQPPAYRSIVSNNGSGG
                     KSYYYRTLSAASSSSNTSQSTSPTTEPLPGGGTSSFLRRYASSGPGMTSSGGGGSIST
                     PPSPHILAGLDRRHRSPDPPPRYNRGQSPLLLRKNLLELSGQPPGSPLLHRRYVSASP
                     PLPPPRRGSESVPGSPQHFRTRIHYTPEPQRRIYRTIDQ"
     misc_feature    1184..2071
                     /gene="hep"
                     /note="Catalytic domain of the dual-specificity Protein
                     Kinase, Mitogen-activated protein Kinase Kinase 7; Region:
                     PKc_MKK7; cd06618"
                     /db_xref="CDD:270791"
     misc_feature    order(1250..1264,1274..1276,1313..1315,1319..1321,
                     1412..1414,1460..1471,1475..1480,1487..1489,1601..1603,
                     1607..1618,1622..1624,1652..1657,1664..1666,1703..1714,
                     1718..1720,1805..1807,1832..1834)
                     /gene="hep"
                     /note="active site"
                     /db_xref="CDD:270791"
     misc_feature    order(1250..1264,1268..1270,1274..1276,1313..1315,
                     1319..1321,1412..1414,1460..1471,1475..1480,1484..1489,
                     1607..1609,1613..1618,1622..1624,1655..1657)
                     /gene="hep"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270791"
     misc_feature    order(1259..1264,1601..1603,1607..1615,1664..1666,
                     1703..1714,1718..1720,1805..1807,1832..1834)
                     /gene="hep"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270791"
     misc_feature    1652..1720
                     /gene="hep"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270791"
     polyA_site      5515
                     /gene="hep"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 aatttagtgc atttgcgagc agctcacaca ctgttttgga tttgtacacg atttaggcag
       61 caaaatttta caaaaccgag tgttcgaatg tgccagtgaa ccgccgcctg cggccgcaaa
      121 acgaaacgat cgcccagaac cgaaaaacaa cgccctcgaa aggaaaacag ccgtggcaaa
      181 cctcccgaaa aaaagcggag gaaaaatcgc aagttgttgt tgccgtttgc tggtgaaaaa
      241 gaaagagaga gagagggcgc tgcgtgtgtg tgtgtgtgtg cgagggtgtc tctctctaac
      301 gcacagtgac tgtgttttcc tttttttcga ttttgttttt gtggccgcca accaaatcag
      361 aaaataaaat aaaacaaaaa gtccagctat ctgtgtgtgt gtgtgtgccg ccaaacaaca
      421 acaacagcga caaaaaaccg cgcacaacaa aacaattcac acacacgcac cctcccccgc
      481 cagcgcgctc gcgtgtgtgt gtgtgtgtgt gagagagaga aaaatcgaag aagtgctggc
      541 caaaaaaaaa tagaaaaaag aaaaatacca aaaaaaaccc aataaaaaac aaataaatac
      601 gaaccaaaag tcgcgaaatc ataaggataa atccggaaat atgtccacca ttgagttcga
      661 gacgatcggc agtcggctgc agtccttgga ggcgaagctc caggcgcaga acgagtccca
      721 cgaccagatc gtctcctctg cccgcgttcc gcccctggcc acatccgcgt ccgcatccgc
      781 caccacatcc gcatcttcgc acggaatggg aatcggctcc ggaatcagca tagcccagcg
      841 gccagcacct ccagttcctc atgcgacgcc catcgccagt gccaatgcca ccgcctcgtc
      901 ctcatccgca tccgcatctg cattcgcatt cgcatccgcc tcaacatccg catctgcctc
      961 atccgcgtcc gcagctccgt cgacgggcgc cttcggcgga acatacaccc cgcccacaac
     1021 cagagtgccg cgagccacgc ccacactgcc cctgctctca agcggtcccg gtggcggtgg
     1081 cggattcaac cggacgcgac cggtgatact tccgctgccc acgccgccgc atccgccggt
     1141 ttcggaaacg gacaagaagc tgaagataat catggagcag accggcaagc tgaacatcaa
     1201 cgggcggcag tatccgacgg acatcaacga cctcaagcac ctgggcgact tgggcaacgg
     1261 gaccagcggc aatgtggtga agatgatgca cctgtccagc aacatgatca tcgccgtgaa
     1321 gcagatgcgg cgcactggca atgcggagga gaacaagcgc atcctgatgg atctggacgt
     1381 ggtgctcaag tcgcacgact gcaagtacat tgtcaagtgc ctgggctgtt tcgttcgcga
     1441 tccggatgtt tggatctgca tggagctgat gtcgatgtgc ttcgacaagc tgctcaagct
     1501 ctccaagaag ccagtgcccg aacagattct gggcaaggtc acagtggcga cggtcaacgc
     1561 attatcctat ctgaaggaca agcacggggt catccatcgc gatgtgaagc catcgaacat
     1621 tctgatcgac gagcgtggga acataaagct ctgtgatttc gggatcagcg gtcgcctggt
     1681 ggactccaag gccaacacac gatccgccgg ctgtgcagct tatatggcgc cggagcgcat
     1741 cgatcccaaa aagccaaagt acgatattcg cgccgatgtg tggtccctgg gcataacgct
     1801 ggtggagctg gccaccgcgc gatccccgta cgaaggatgc aacacggact tcgaggtgct
     1861 gaccaaggtg ctggactcgg agccgccgtg tttgccctac ggcgagggtt tcaatttcac
     1921 tcagcagttt cgagatttcg tcatcaagtg cctcacaaag aaccatcagg atagacccaa
     1981 gtatccggag ctgctggccc agcccttcat acggacctat gaaataacca aagtagatgt
     2041 gcccaattgg tttcagagca tcaaggatag ccggctgcgc gccaacggcg atcccaatcc
     2101 gctccagagg gccacggcga ctggaagtgg aggcggttct ggatgcggat ctctcgcagg
     2161 atcaggatcc gcaggtggat caggagccat caaatatggt aggacaatgg cgcagagtcc
     2221 cacgaatccg cagaagacaa taaaacccac tcagataccg agttaccagc agcagcagca
     2281 gtcgcagtat ttcatgcaat cagccacaca actacctcaa acaacaacac caacggcaac
     2341 gacaaactgt tttggcggaa gcggaaacgg gagaggaaac ggaaatggca gcggtagcgg
     2401 cagcagcagc agcgccagtc ctctatcgcc acccagcgga ggcggcggcg tcggcgatct
     2461 caaccggctg tatcgcaaat cgccgttcat gcagcgaaag ctgagcaacg gatcgcatca
     2521 tccgcactac aaatacaacg acgagagccc caagaaggag tccatgttca gtagcatcgg
     2581 tcaatcgatt ctacgcaatc tgaccacatc gcccttcagc caaaagaaac acaattcagc
     2641 agcagcgact gcaataacaa taccactgcc gcacaacaac caaacaacat tattcacgga
     2701 tgccgcaaca gcaacagcaa acgcaattgc aacagcgacg gcaacaacac cgccaaatat
     2761 tgcagctgca gcagcagcag cagcgcccac gacaacgcca acagccacgc ccacttggcg
     2821 cctgccagcg gataattccc aagcctacga cagctgtgat agtagtagta atgcgaccac
     2881 gaccctcaac ttggccctat cctcaccctc gccctcgttg ccgcgcaagc aattcgccac
     2941 ggaatcgcca accctacagc tcgccagtca gcagcagcaa cagcaaccac agcgattgca
     3001 gccgggcaat cagagcccca tagtgctgca gcgcttctac caccagcaga accagctgcg
     3061 cgagaaggag gcggccgagc ggtatcaaca gcagcgccag cagccgcaga ccatcggagt
     3121 gaccagcacg aatccgtttc acagcaacta tgtgccgccg ccgccatcga cgcactcgac
     3181 ctctagtcag tcctccacgc agtcgacgtg ttcgcagatc gccgtcaatc ccgccagcct
     3241 gtcaccatcg acgggatcag gaggagatgc agcagctggt cactttggag ccggtggcaa
     3301 tggtgagccg ttgcagtacc aaccgctgcc cattgccgcc gaggcaacgg cgacgagtcc
     3361 cacgctgctg cccagatccc cggatcctca gcagtcggac tacggcgctg gcggcagttc
     3421 catggtggcc agcaagctga gcaagctgta cgcccgccgg cagcttttgg gccagagttc
     3481 gagcagcggg gcgagcagca gcagcctgga tggatgctcc cgcgagcagc acgatgctgg
     3541 ctggttcaac accctcgccg gcgccatgaa gcggcagttt gccacctatg ttaaaaccca
     3601 attgaattcc acagccacgt caccggtggc ggcgtcggcg gcgtcggcca gcatggatcg
     3661 ggatcaggag ccagtgcatc cgcagccgcc ggcctacagg agcatcgtga gcaacaacgg
     3721 cagcggcggc aagtcctact actatcgcac cctgtcggcg gccagcagca gcagcaacac
     3781 cagccaaagc acttcgccga cgacggaacc tctgcctggt ggcggcacca gcagcttcct
     3841 gcgacgctac gctagcagcg gaccaggaat gaccagcagc ggcggcggtg gcagcatcag
     3901 cacgccgccc agtccgcaca tcttggccgg attggatcgc aggcaccgca gtccggatcc
     3961 accgccgcgc tacaatcgcg gacaatcgcc gctgctgctg cgcaagaatc tgctggagct
     4021 gagtggccag cctcctggct cgccgcttct gcacagaaga tatgtttcgg cctcgccacc
     4081 gctgccgccg ccgcgtcggg gatccgaaag cgtgccggga tcgccgcagc acttccgcac
     4141 ccgcatccac tacacacccg agccccagag acgcatctac cgcacaatag atcaatgagt
     4201 ggcgctgcaa atcatggtca tgtgatgctg gtacggcttc gacgacgatg ccgccggtgc
     4261 cgctgatcat ccggaggggg cagagctgct ggagcccatc tccctgcccg ccgtcgcggc
     4321 gtcagcggcc ggcgactcgc tgtcgatgcc ggcatatgcc gatccgactg ggatgaaccg
     4381 gcgcatcggt tgcggtatcg gtcgtcggac gtgctcggcc agcggatcgt atgccagctt
     4441 gtattcggat aggaatgaat ggccaggagg atctggatca ggaccaggat caggatctcg
     4501 atctgaagct gcagctggtg cggcgggagc atcgacgacg atcagagctg aatacccgtg
     4561 gacatgtgat tgatgacaaa cgaaagtgtt caaaagtctt atacgtgttt aagtgcttga
     4621 gccaggcaat ctgctaagca atcagattcg ttgcgcagct ccaaattgta catagacata
     4681 tatatatctg ggaggatcta tatagacaca tccgatacta gtgcaatagt tgaaagcaat
     4741 tctgttcgaa gccccctgta tccaaatcta ttccctctta tatacatata tctctttatc
     4801 tgtgtctgta tctccttcaa tggtaactct gtaactctgt aatcaaaagt ttacacttta
     4861 cacaacgtaa attatttaac cgtagctcta aagaacaaca acaaaatagc taaatcgatg
     4921 atatatggcg aaaatccaat ccataatcca acagaaagta taaaggaaag aaattcaaat
     4981 gatttgtagc tttgtatata gagaagagag gaggcgaagt gcaaagagtc gttgcatttg
     5041 cttttgctgt ttgcaatttg ttttagttta tacatttcat taaacatcaa cttgtatgct
     5101 gagtggaagg gaaaccaaca acaacaacaa caaaaacaaa caaacaacat taacaatgga
     5161 attattgtac tgattattat aattgtttaa tttattatgt aagcggcaac aagcaacaat
     5221 tcaaattcaa ttttcgtttt gtttttcatt taaaaagggg tggaaaggat tggttatttc
     5281 ttcgagaata taagcaagtc tgaagataaa aactgctcag attaacggaa caattggaat
     5341 tgcttatgta cggggaataa agaaagccat tcgagttttt cgagatattt tagaacagct
     5401 tcaggtgctg aaacccaaag gcccgaaacc atttcttcta gttcttagct tccacccttc
     5461 cagttaaaag aaataaaaat aaaaacaaaa caataaatca ttataccgaa accag