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LOCUS XM_017157429 3116 bp mRNA linear INV 09-DEC-2024 (Hecw), transcript variant X3, mRNA. ACCESSION XM_017157429 VERSION XM_017157429.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017157429.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3116 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3116 /gene="Hecw" /note="Hecw ubiquitin protein ligase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108068051" CDS 268..1572 /gene="Hecw" /codon_start=1 /product="E3 ubiquitin-protein ligase HECW2 isoform X3" /protein_id="XP_017012918.1" /db_xref="GeneID:108068051" /translation="MGFLSKAAYIVWAVLFEQEIMSYVPIEERSPQGSPVLSSRMPQR APPPFRRDFEAKLRSFYRKLESKGYGQGPHKLKLHIRRSHLLEDAFRRIMSANKKDLQ RGRLAVLWDTEEGLDYGGPSREFFFLLSRELFNPYYGLFEYSANDTYTVQVSPLSAFV DNCHDWFRFSGRVLGLALVHQYLLDAFFTRPFYKALLRLPVALSDLESLDNEFHQSLQ WIRDNDIGTGVDLGLTFCVTEELLGRVVERELKPGGKNIIVNEKNKKEYLERMIKWRL ERGVQEQTESLVRGFYEVVDSRLVSVFDARELELVIAGTAEIDTNDWRLNTEYRSGYH DNHQVIVWFWQVIERFSNEQRLRLLQFVTGTSSIPYEGFSALRGSTGPRRFCIEKWGK PNALPRAHTCFNRLDLPPYPTPELLYEKLLLAVEETNTFGIE" misc_feature 493..1563 /gene="Hecw" /note="HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional...; Region: HECTc; cd00078" /db_xref="CDD:238033" misc_feature order(511..513,604..606,637..639,820..822,1348..1350, 1453..1458,1465..1479,1537..1539,1558..1560) /gene="Hecw" /note="catalytic cleft [active]" /db_xref="CDD:238033" misc_feature order(904..906,913..918,922..927,934..936,958..960, 964..966,976..978,982..984,1000..1002,1015..1017, 1066..1068,1078..1080) /gene="Hecw" /note="E2 interaction site [active]" /db_xref="CDD:238033" polyA_site 3116 /gene="Hecw" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgttgcgact tcgttccgtt tgtcggatag tgagcttcta tcaccagaaa gcagaagcat 61 ttcaacagtc gcagcgcgag cacacatcgt tctcacccgt tcccgttaaa cgaaccgata 121 ataaccgata ccgaaaaccg tttcgcgcct tttttaaata cccgttttaa tcagaatata 181 cccgaaatat ccgaaaggtt cgatcgccgg tgatctcagt gatgttaaac cttttggcgc 241 ctaaggctct tttaggcgca caacaaaatg ggctttcttt cgaaggctgc ctacatcgtg 301 tgggccgtcc tgtttgagca ggagatcatg agctatgttc ctattgaaga gcgcagtccc 361 cagggatcgc cggtgctcag ttcccggatg ccgcagcggg cgccgccgcc gtttcgcagg 421 gatttcgagg ccaagctgcg cagcttctac cgcaagctgg agtccaaggg ctatggccag 481 gggccgcaca agctaaaact ccacatccga cgcagccatt tgctggagga cgccttccgt 541 cgcatcatgt cggcgaacaa gaaggacctg cagcgcggcc gcctcgccgt cctgtgggac 601 acggaggagg gcctggacta cggcggaccc tcccgcgagt tcttcttcct gctctcccgc 661 gaactgttta acccctacta cggcctgttc gagtattcgg caaatgatac gtacacggtt 721 caagtgtcgc cgctgtcggc gttcgtggac aactgccacg attggttccg cttcagtggt 781 cgtgttttgg gtctggccct cgtccatcaa tatctgctgg acgccttctt cacgcggccc 841 ttctacaagg ctctcctgcg actgcccgtc gccttgagtg atctggagtc gctggacaat 901 gagttccatc agtcgctgca gtggatacgc gacaatgaca ttggaacggg cgtggatctc 961 ggtctgacct tctgcgtcac cgaggagctg cttggtcggg tggtggagcg tgaactgaag 1021 ccgggcggca agaacatcat tgtgaacgag aagaacaaga aggagtatct ggagcggatg 1081 atcaagtggc ggctggagcg aggcgttcag gagcagacgg agtcgctggt gcgcggcttc 1141 tacgaggtgg tcgactcgcg gctcgtctcc gtcttcgatg cccgtgaatt agagctggtg 1201 atagcaggaa ccgccgagat cgacacgaac gattggcgcc tgaacacaga gtatcggtcg 1261 gggtatcacg acaaccacca ggtgatcgtg tggttctggc aggtcatcga gcggtttagc 1321 aacgagcagc gtttgcgtct gctgcagttt gtcaccggca cctcgagcat tccgtacgaa 1381 ggtttctccg cgctgcgcgg atcgacggga ccgcggcgtt tttgcatcga gaagtggggc 1441 aaaccgaatg ccctgccccg cgcacacacc tgcttcaatc ggttggatct gccgccctat 1501 cccacgcccg agctgctcta cgagaagctg ctgctggccg tcgaggagac caacacgttc 1561 ggcatcgagt aggcagcacg tgatattatt gcacctcagc cgccgcactt tgttgcaccc 1621 aaaaaaaaaa aacgctttat ttcgatttta gaagtttttt ttagaacttg cctaagtcta 1681 ggaattcggg gtgatgcaga aatctctgag aaaactattt aaaatcaatt gaatttaatt 1741 ttttgaatgc taatccctag atataataaa cgaaatttga agtttacttc gtttcccttg 1801 agaaaaaatt agttgttagc tatttctagg cgcctaaatt atactgggat ttctgcaaca 1861 ccccaccccg attgtactgt agttatttat atacgtaggt tacccgtccc cttcaaaaga 1921 aaacaaaaaa gagaagaagc ctagccatag acagactcgc tactttaggc atcccacaca 1981 ctagttcgta gacaatttgc cttcgccttc gtttgccgtt cactgaatgg aagttacctc 2041 aagagcaaaa cggcttgcca gcgccgccag tcattagtcc taagatctta aaacccaaac 2101 cttataagac ccccataaac ttataaactg taagcctaag gatccttcgc ttgactctgc 2161 ctgatttaca atcgaaacga tgccaactgc ctctagagaa attttcaacg cctaatcgct 2221 gctccagatt cagaagttca acgggggccc caaagaaaaa aaggagagca gagcaactct 2281 acgccaatac ttaactagct tataatgttg tcttagcctt aactcgaatt ccaactcaaa 2341 tttgaacact ccctagatgt gtgcattcca aataagcgta ttgtggatgt cagttattat 2401 atagcatata atatatatac ccctatttac ccctctctcc tttaacccaa acaaaaaaag 2461 tatgtaaact gtttttgaat ttacaaaacc ccttaactat ccgtgcggag gctgccgtgt 2521 gcttcctgcg gcctgccact tgaccaaatc tctggccagg acacaggact ccacatggcg 2581 gctccgatcg ggtctatatg gtatattata tatacacatt ttggctgctg ttttgccaac 2641 gattacaaat tggtccagtg cgttgcttcg gctttattgg ttatttcggc gcataaaatt 2701 aatatggatt atatttaacg aaaacataca aaaattcgaa acgtagctaa ataattataa 2761 aaaaaagaaa agaaaaaaat aaaaaaacaa attttttaat attagtattg atcgaaagcg 2821 agagcgaaac gaaacgaaaa gataactaaa tggtgatttg tttacatgta tttttggcat 2881 tagttaatac ggaaagcgaa agagacggaa ggccagagat ggagagagat agagcgatag 2941 acagagctgg agacagtgtc agtgaaagag acagagatag aaagataaaa agcgcttttt 3001 gaactactta ttgataaatg aattgtttta atgaattatt aatgtgcgtg tatttatgaa 3061 caaattaact ataattataa acaaataaat gtgagccttt tacttcaaaa gcaaaa