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LOCUS XM_017157428 3054 bp mRNA linear INV 09-DEC-2024 (Hecw), transcript variant X2, mRNA. ACCESSION XM_017157428 VERSION XM_017157428.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017157428.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3054 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3054 /gene="Hecw" /note="Hecw ubiquitin protein ligase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108068051" CDS 200..1510 /gene="Hecw" /codon_start=1 /product="E3 ubiquitin-protein ligase HECW2 isoform X2" /protein_id="XP_017012917.1" /db_xref="GeneID:108068051" /translation="MGLFSKFVYTFHMWENLFEQEIMSYVPIEERSPQGSPVLSSRMP QRAPPPFRRDFEAKLRSFYRKLESKGYGQGPHKLKLHIRRSHLLEDAFRRIMSANKKD LQRGRLAVLWDTEEGLDYGGPSREFFFLLSRELFNPYYGLFEYSANDTYTVQVSPLSA FVDNCHDWFRFSGRVLGLALVHQYLLDAFFTRPFYKALLRLPVALSDLESLDNEFHQS LQWIRDNDIGTGVDLGLTFCVTEELLGRVVERELKPGGKNIIVNEKNKKEYLERMIKW RLERGVQEQTESLVRGFYEVVDSRLVSVFDARELELVIAGTAEIDTNDWRLNTEYRSG YHDNHQVIVWFWQVIERFSNEQRLRLLQFVTGTSSIPYEGFSALRGSTGPRRFCIEKW GKPNALPRAHTCFNRLDLPPYPTPELLYEKLLLAVEETNTFGIE" misc_feature 431..1501 /gene="Hecw" /note="HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional...; Region: HECTc; cd00078" /db_xref="CDD:238033" misc_feature order(449..451,542..544,575..577,758..760,1286..1288, 1391..1396,1403..1417,1475..1477,1496..1498) /gene="Hecw" /note="catalytic cleft [active]" /db_xref="CDD:238033" misc_feature order(842..844,851..856,860..865,872..874,896..898, 902..904,914..916,920..922,938..940,953..955,1004..1006, 1016..1018) /gene="Hecw" /note="E2 interaction site [active]" /db_xref="CDD:238033" polyA_site 3054 /gene="Hecw" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgcatagaat gggcacccca aatcagtcgt ctgcctgctt cagttggatt gggattcgat 61 ttgaccaaaa aagttatcgt tttgtgattt cagttttccg tttttttatt ttggtgttct 121 gttttttttc ggtgcctggc tttttgtgaa tttagtgtac tgctaattga gaatccattt 181 cggatttaca acccatcaaa tgggtctctt ttccaagttc gtctacacct tccacatgtg 241 ggagaacctg tttgagcagg agatcatgag ctatgttcct attgaagagc gcagtcccca 301 gggatcgccg gtgctcagtt cccggatgcc gcagcgggcg ccgccgccgt ttcgcaggga 361 tttcgaggcc aagctgcgca gcttctaccg caagctggag tccaagggct atggccaggg 421 gccgcacaag ctaaaactcc acatccgacg cagccatttg ctggaggacg ccttccgtcg 481 catcatgtcg gcgaacaaga aggacctgca gcgcggccgc ctcgccgtcc tgtgggacac 541 ggaggagggc ctggactacg gcggaccctc ccgcgagttc ttcttcctgc tctcccgcga 601 actgtttaac ccctactacg gcctgttcga gtattcggca aatgatacgt acacggttca 661 agtgtcgccg ctgtcggcgt tcgtggacaa ctgccacgat tggttccgct tcagtggtcg 721 tgttttgggt ctggccctcg tccatcaata tctgctggac gccttcttca cgcggccctt 781 ctacaaggct ctcctgcgac tgcccgtcgc cttgagtgat ctggagtcgc tggacaatga 841 gttccatcag tcgctgcagt ggatacgcga caatgacatt ggaacgggcg tggatctcgg 901 tctgaccttc tgcgtcaccg aggagctgct tggtcgggtg gtggagcgtg aactgaagcc 961 gggcggcaag aacatcattg tgaacgagaa gaacaagaag gagtatctgg agcggatgat 1021 caagtggcgg ctggagcgag gcgttcagga gcagacggag tcgctggtgc gcggcttcta 1081 cgaggtggtc gactcgcggc tcgtctccgt cttcgatgcc cgtgaattag agctggtgat 1141 agcaggaacc gccgagatcg acacgaacga ttggcgcctg aacacagagt atcggtcggg 1201 gtatcacgac aaccaccagg tgatcgtgtg gttctggcag gtcatcgagc ggtttagcaa 1261 cgagcagcgt ttgcgtctgc tgcagtttgt caccggcacc tcgagcattc cgtacgaagg 1321 tttctccgcg ctgcgcggat cgacgggacc gcggcgtttt tgcatcgaga agtggggcaa 1381 accgaatgcc ctgccccgcg cacacacctg cttcaatcgg ttggatctgc cgccctatcc 1441 cacgcccgag ctgctctacg agaagctgct gctggccgtc gaggagacca acacgttcgg 1501 catcgagtag gcagcacgtg atattattgc acctcagccg ccgcactttg ttgcacccaa 1561 aaaaaaaaaa cgctttattt cgattttaga agtttttttt agaacttgcc taagtctagg 1621 aattcggggt gatgcagaaa tctctgagaa aactatttaa aatcaattga atttaatttt 1681 ttgaatgcta atccctagat ataataaacg aaatttgaag tttacttcgt ttcccttgag 1741 aaaaaattag ttgttagcta tttctaggcg cctaaattat actgggattt ctgcaacacc 1801 ccaccccgat tgtactgtag ttatttatat acgtaggtta cccgtcccct tcaaaagaaa 1861 acaaaaaaga gaagaagcct agccatagac agactcgcta ctttaggcat cccacacact 1921 agttcgtaga caatttgcct tcgccttcgt ttgccgttca ctgaatggaa gttacctcaa 1981 gagcaaaacg gcttgccagc gccgccagtc attagtccta agatcttaaa acccaaacct 2041 tataagaccc ccataaactt ataaactgta agcctaagga tccttcgctt gactctgcct 2101 gatttacaat cgaaacgatg ccaactgcct ctagagaaat tttcaacgcc taatcgctgc 2161 tccagattca gaagttcaac gggggcccca aagaaaaaaa ggagagcaga gcaactctac 2221 gccaatactt aactagctta taatgttgtc ttagccttaa ctcgaattcc aactcaaatt 2281 tgaacactcc ctagatgtgt gcattccaaa taagcgtatt gtggatgtca gttattatat 2341 agcatataat atatataccc ctatttaccc ctctctcctt taacccaaac aaaaaaagta 2401 tgtaaactgt ttttgaattt acaaaacccc ttaactatcc gtgcggaggc tgccgtgtgc 2461 ttcctgcggc ctgccacttg accaaatctc tggccaggac acaggactcc acatggcggc 2521 tccgatcggg tctatatggt atattatata tacacatttt ggctgctgtt ttgccaacga 2581 ttacaaattg gtccagtgcg ttgcttcggc tttattggtt atttcggcgc ataaaattaa 2641 tatggattat atttaacgaa aacatacaaa aattcgaaac gtagctaaat aattataaaa 2701 aaaagaaaag aaaaaaataa aaaaacaaat tttttaatat tagtattgat cgaaagcgag 2761 agcgaaacga aacgaaaaga taactaaatg gtgatttgtt tacatgtatt tttggcatta 2821 gttaatacgg aaagcgaaag agacggaagg ccagagatgg agagagatag agcgatagac 2881 agagctggag acagtgtcag tgaaagagac agagatagaa agataaaaag cgctttttga 2941 actacttatt gataaatgaa ttgttttaat gaattattaa tgtgcgtgta tttatgaaca 3001 aattaactat aattataaac aaataaatgt gagcctttta cttcaaaagc aaaa