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LOCUS XM_017155752 1963 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017155752 VERSION XM_017155752.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017155752.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1963 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1963 /gene="Vps4" /note="vacuolar protein sorting 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108066946" CDS 166..1494 /gene="Vps4" /codon_start=1 /product="vacuolar protein sorting-associated protein 4" /protein_id="XP_017011241.1" /db_xref="GeneID:108066946" /translation="MAAGTTLQKAIDLVTKATEEDRNKNYAEALRLYEHGVEYFLHTI KYEAQGEKAKDSIRAKCLQYLDRAEKLKEYLKKGKKKPLKEGGESSAKDDKDKKSDSD DEDGDDPEKKKLQSKLEDAIVIEKPKVQWSDVAGLEGAKEALKEAVILPIKFPQLFTG KRIPWKGILLFGPPGTGKSYLAKAVATEANRSTFFSVSSSDLMSKWLGESEKLVKNLF ELARQHKPSIIFIDEIDSMCSARSDNENDSVRRIKTEFLVQMQGVGNDTDGILVLGAT NIPWVLDSAIRRRFEKRIYIPLPEAHARLVMFKIHLGNTTHVLTEQDLKELAGKTEGY SGADISIVVRDALMEPVRKVQTATHFKRVTGPSPTNSEEIVNDLLVPCSPGDPGAVEM NWMDVPSDKLFEPPVTMRDMLKSLSRTKPTVNEDDLKKLRKFTEDFGQEG" misc_feature 181..372 /gene="Vps4" /note="MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear; Region: MIT_VPS4; cd02678" /db_xref="CDD:239141" misc_feature 541..1053 /gene="Vps4" /note="ATPase domain of vacuolar protein sorting-associated protein 4; Region: RecA-like_VPS4; cd19521" /db_xref="CDD:410929" misc_feature order(544..546,601..603,613..615,622..627,637..639, 649..651,685..690,700..702,712..714,745..747,751..753, 757..765,772..774,796..798,859..864,871..873,886..888, 892..894,898..906,910..918,925..930,997..999,1006..1008) /gene="Vps4" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:410929" misc_feature order(562..570,574..576,685..705,859..861,994..996) /gene="Vps4" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:410929" misc_feature 1132..1248 /gene="Vps4" /note="AAA+ lid domain; Region: AAA_lid_3; pfam17862" /db_xref="CDD:465537" misc_feature 1300..1482 /gene="Vps4" /note="Vps4 C terminal oligomerization domain; Region: Vps4_C; pfam09336" /db_xref="CDD:462762" polyA_site 1963 /gene="Vps4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctgttaatct aacctatcga taaacccata caaacaagac gtcgtcattc gttggaattc 61 caacaaatag ttaaaatagt taagttctcc ttttgtttaa cagccaacga gttagccagt 121 gacgcttgcc tggatttcgg agcaagtcag ccagcataaa tcaccatggc agccggaacc 181 acactacaga aggccatcga tctggtgacc aaggccaccg aggaggatcg caacaaaaac 241 tacgcggagg cactgcgtct ctacgagcac ggcgtcgagt acttcctgca caccatcaaa 301 tatgaggcgc agggcgagaa ggccaaggac tcgatacgag ccaagtgcct gcagtatttg 361 gaccgcgccg agaagctgaa ggagtacctg aagaagggca agaagaaacc gctcaaggag 421 ggcggcgagt cgagtgccaa ggacgacaag gacaagaaga gcgacagcga cgacgaggat 481 ggcgatgatc cggaaaagaa gaagctgcag agcaagctgg aggatgccat tgtgatcgag 541 aagcccaagg ttcagtggtc cgatgtcgcg ggcctcgagg gcgccaagga agcgctgaag 601 gaggccgtca ttctgccgat taaattcccg cagctcttca ccggcaagcg tattccatgg 661 aagggcatcc tgctcttcgg accgcccggc acgggtaaat cgtatctggc caaggccgtc 721 gccaccgagg ccaatcgctc cacattcttc tcggtttcca gctcggatct gatgtccaaa 781 tggctgggcg agtccgagaa gctggtcaag aatctcttcg agctggcccg ccagcacaag 841 ccgtcgatca tcttcattga cgaaatcgat tcgatgtgct cggcgcgttc ggacaatgag 901 aacgacagcg taaggcgcat caaaacggag ttccttgtgc agatgcaggg cgtgggcaat 961 gacaccgacg gcatactcgt tctgggcgcc accaacatac cctgggtact ggactcggcc 1021 atccgtcggc gattcgagaa gcgcatctac attccgctgc cggaggcgca cgctcgcctc 1081 gtcatgttca agatccattt gggcaacacc acgcacgtgc tcacggagca ggatctcaag 1141 gagttggccg gcaaaacaga gggctactct ggcgcggata tatcgatcgt ggtgcgcgac 1201 gccctgatgg aacctgtgcg caaggtgcag accgcgacgc atttcaagcg cgtaaccggt 1261 cccagtccca ccaacagcga agagattgtc aacgacctgc tcgttccctg ctcgccgggc 1321 gatccgggag ccgtcgagat gaactggatg gatgtgccca gcgacaagct cttcgaaccg 1381 cccgttacca tgcgcgacat gctgaagtcc ttgtcgcgca cgaaacccac tgtcaacgag 1441 gacgatctga agaagctgcg caaattcaca gaggactttg gccaggaggg ctagatcacc 1501 gatccccgat gcccgatccc cgccagaagc cgccagcacc accagctaat tctaattgtt 1561 gcctattgca taaattcaaa cacgttttac ttctggctct ccttaaacca ttcttttttt 1621 tattatttta tatatataat atgatatgta aacctacgat ttatggttaa attgtaattc 1681 aaattcgtcg ggcgattgct acagagacag ggaagagatg aaatggagat ggatggatgt 1741 gcagtgtgtg ggattgttgt aatcacaaag tcaatgtatt tttgtactct taatgttaag 1801 cgatggaaga agtccgaaaa caatgccgaa tgcaatacca gatcgcatca ggatgaggag 1861 aaggagtagc aagtggagga gaagcaagtt ttagcgcagt cgagcaaacc tatttaaaat 1921 gtaacgtacc agaaataaag ccgaaaattg tatactttac cga