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LOCUS XM_017153743 1673 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017153743 VERSION XM_017153743.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017153743.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1673 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1673 /gene="Cdk7" /note="Cyclin-dependent kinase 7; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108065659" CDS 91..1152 /gene="Cdk7" /codon_start=1 /product="cyclin-dependent kinase 7" /protein_id="XP_017009232.2" /db_xref="GeneID:108065659" /translation="MLPNPNDKKDRYAKLSFLGEGQFAIVYKARDTVTSQIVAVKKIK KGSREDARDGINRTALREIKILQELQHENIIGLVDVFGQLSNVSLVFDFMDTDLEVII KDTKIILTQANIKAYAIMTLKGLEYLHLNWILHRDLKPNNLLVNSDGVLKIGDFGLAK SFGSPNRIYTHHVVTRWYRSPELLFGARQYGTGVDMWAVGCILAELMLRVPFMPGDSD LDQLTRIFATLGTPSDAEWPHLGKLHDYLQFRNFPGTPLENIFTAAGNDLIHLMRRLF AMNPLRRVSCQEALSMPYFGNKPAPTVGPKLPMPSAILAAKEGANPQAGEEKPALKRK LVETTVRGNGLAQKKRLQF" misc_feature 121..1014 /gene="Cdk7" /note="Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7; Region: STKc_CDK7; cd07841" /db_xref="CDD:270833" misc_feature order(142..153,157..162,166..168,205..207,211..213, 271..273,313..315,361..372,379..381,385..390,499..501, 505..507,511..516,520..522,553..555,562..564,568..570, 598..600,604..615,619..621,733..738) /gene="Cdk7" /note="active site" /db_xref="CDD:270833" misc_feature order(142..144,148..162,166..168,205..207,211..213, 313..315,361..372,511..516,568..570) /gene="Cdk7" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270833" misc_feature order(247..255,259..261,268..273,277..282,289..294, 328..330,334..336,349..351,466..468,475..486,568..570, 574..585,595..600,931..933,943..951) /gene="Cdk7" /note="CDK/cyclin interface [polypeptide binding]; other site" /db_xref="CDD:270833" misc_feature order(271..273,385..387,499..501,505..507,562..564, 598..600,604..615,619..621,733..738) /gene="Cdk7" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270833" misc_feature order(550..585,589..621) /gene="Cdk7" /note="activation loop (A-loop); other site" /db_xref="CDD:270833" polyA_site 1673 /gene="Cdk7" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ccggcaccta tcggttatcg atagcgtgtg cgaaattgaa ttgttttggc atttctttgt 61 tttttgtgtt atttatgagg cttccccacg atgctgccca atcccaacga caagaaggat 121 cgctatgcca aattgtcctt cctgggcgag ggtcagttcg ccatcgtcta taaggcccgc 181 gacacggtga ccagccagat tgtggccgtg aagaagatca agaagggatc ccgcgaggac 241 gcacgcgatg gcatcaaccg gactgctctg cgggagatca agatcctgca ggagctgcag 301 cacgagaaca tcattggcct ggtcgatgtc tttggccagc tttcgaatgt ctcgctggtc 361 ttcgacttca tggacaccga tctggaggtg atcatcaagg acacgaagat catcctcacc 421 caggcgaaca tcaaggccta tgccataatg acgctgaagg gcctggagta tctgcatctc 481 aactggatcc tccatcgcga tctgaagccc aacaatttgc tggtgaacag cgatggagtg 541 ctgaagatcg gtgatttcgg tctggccaag tcgtttggct cgccgaatcg catctacacc 601 caccacgtgg tcacccgctg gtatcgttcg ccggaactgc tcttcggcgc ccggcaatat 661 ggcaccggcg tggatatgtg ggcggtgggc tgcattctgg cggagctcat gttgcgggtg 721 cccttcatgc cgggcgactc ggatctggac cagctgaccc ggatctttgc caccctgggc 781 accccgtcgg atgcggaatg gccgcatctg ggcaagctgc atgattattt gcagtttagg 841 aactttccgg gaaccccgct cgagaatatc ttcacagccg ctggcaatga tttgatccac 901 ctgatgcgtc gcctgttcgc catgaatcct ttgaggcgag tctcctgcca ggaggccctc 961 agtatgccgt actttggcaa taagcccgct cccactgtgg gccccaaatt gcccatgccc 1021 tcggccattt tggccgccaa ggagggcgcc aatccgcagg ccggcgagga gaagcccgcg 1081 ctgaagcgga agctggtgga gaccacggtt aggggcaatg gattggccca gaagaagcgg 1141 ctgcagttct agcacaaaca cacacttaag gtatcgatca tttgcagtgc attgcattgt 1201 caaaacaaat cggttgtcag acattttgta ctatatctta aatatttgta caactactgt 1261 ttaagaaagg agttctcaag gttttctttt gtacgatcct ttggaaaata atttatacaa 1321 tttacctatt agaaaaggaa acaaagaaac aagtcacaga ttttctatta tatcttaaat 1381 atctcaaatt tctcaagttt cgctcccata aaatctctac tctaatttac caattgtgaa 1441 tggagtgata gtgataaaat atttcactca tttgaagagt tcttgcaaat gagtagccta 1501 aaaaacacct tactttgcat tgttataatc tgtaactgac ttgcaaacct tttcttaatt 1561 caccttacct ctttttttgt ttttcaaagt gagttgggca gttaaaaaag cctatatgag 1621 taagttagga tttaagatgg agatgatata ttaaagatgt gattcgaagc aaa